|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
266-580 |
8.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 8.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 266 KYAQVKSILERSKEELSRtvkcrnAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDnckvtimLENVLASHSKMQ 345
Cdd:COG1196 214 RYRELKEELKELEAELLL------LKLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 346 GALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQ---HNSEIESLQKALGVAREDNRKLAMSL 422
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEleeLEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 423 EQALQTNNHLQTKLDHIQEQLESKELERQNLETfkdrmTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELKK 502
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALR-----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1214581234 503 ALDEAnfrsvevSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQY 580
Cdd:COG1196 436 EEEEE-------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-680 |
3.34e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 3.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 2 SLHEASEKAQVLNDqLTKKCSELSCMLQTVTMEKARiiaDHQAILQVEQKMMTQTFQEQNLLLDAAHASItNELQTVQNE 81
Cdd:TIGR02168 204 SLERQAEKAERYKE-LKAELRELELALLVLRLEELR---EELEELQEELKEAEEELEELTAELQELEEKL-EELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 82 KTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQerc 161
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES--- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 162 nLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQvtsdyhGLAQQKVEKITESKNKLAYENGKLQIKVKQLEE 241
Cdd:TIGR02168 356 -LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI------ASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 242 QVQS--FTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQ-- 317
Cdd:TIGR02168 429 KLEEaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEgv 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 318 RQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR------------DSEIAGLKKER----------DLNQQR 375
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenlnaaKKAIAFLKQNElgrvtflpldSIKGTE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 376 VQKLEAEVDQWQARMLVMEDQHNSEIESLQKAL-----GVAREDNRKLAMSLEQALQTNN-------------------- 430
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllgGVLVVDDLDNALELAKKLRPGYrivtldgdlvrpggvitggs 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 431 ---------------HLQTKLDHIQEQLESKELERQNLETFKDRMTEE-SKVEAELHAER--IEALRKQFQTERETTKKV 492
Cdd:TIGR02168 666 aktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSrqISALRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 493 AQReVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKL-------------HLSAKANNAQN 559
Cdd:TIGR02168 746 EER-IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAlrealdelraeltLLNEEAANLRE 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 560 IERMKQIEKELKQMELIKDQYQKKNYEQSL-----SIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQ 634
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIeslaaEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1214581234 635 ELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 680
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-652 |
4.32e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 347 ALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVdqwqarmlvmeDQHNSEIESLQKALGVAREDNRKLAMSLEQAL 426
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEL-----------EELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 427 QTNNHLQTKLDHIQEQLESKELERQNLETfkdrmteeskvEAELHAERIEALRKQfQTERETTKKVAQREVAELKKALDE 506
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEE-----------ELEELEEELEELEEE-LEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 507 ANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYE 586
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1214581234 587 QSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKK 652
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-531 |
5.89e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 5.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 3 LHEASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMmtQTFQEQNLLLDAAHASITNELQTVQNEK 82
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL--EEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 83 TQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRgELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCN 162
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE-EAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 163 LEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTsdyhgLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQ 242
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE-----LEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 243 VQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKV--------- 313
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYeaaleaala 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 314 -----------GNFQRQLAEAKEDNC-KVTIMLENVLASHSKMQGALEKVQIELGRRdsEIAGLKKERDLNQQRVQKLEA 381
Cdd:COG1196 546 aalqnivveddEVAAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 382 EVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMT 461
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1214581234 462 EESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELK---------KALDEANFRSVEVSRTNRELRQKLAELEKI 531
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEeeelleeeaLEELPEPPDLEELERELERLEREIEALGPV 782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-680 |
3.16e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 4 HEASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMmtQTFQEQNLLLDAAHASITNELQTVQNEKT 83
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL--EELESKLDELAEELAELEEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 84 QLQAHLDHL----------ILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTE 153
Cdd:TIGR02168 355 SLEAELEELeaeleelesrLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 154 KEIVQERCN-LEKELAKNKVDINTLTHNLQTLEEE--NKHLADQMASLELQQVTSDYHGLA--QQKVEKITESKNKLAYE 228
Cdd:TIGR02168 435 LKELQAELEeLEEELEELQEELERLEEALEELREEleEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKN 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 229 NGKLQIKVKQLEEQ--VQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVE 306
Cdd:TIGR02168 515 QSGLSGILGVLSELisVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 307 DRENKKVGNFQRQLAEAKE---------DNCKVTIMLENVLASHSKMQGALEKV--QIELGRRDSEIAGLKKERDLNqqr 375
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKlrkalsyllGGVLVVDDLDNALELAKKLRPGYRIVtlDGDLVRPGGVITGGSAKTNSS--- 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 376 VQKLEAEVDQWQARMLVMEDQhnseIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLET 455
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 456 FKDRMTEESK---VEAELHAERIEALRKQFQtERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKIL 532
Cdd:TIGR02168 748 RIAQLSKELTeleAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 533 ESNKEKIKNQKTQIKLHLSAKANNAQNIERM-KQIEKELKQMELIKDQYQKKNYEQSLSIQRfvceMTNLQKEMQMLAKS 611
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLaAEIEELEELIEELESELEALLNERASLEEA----LALLRSELEELSEE 902
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 612 QYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLK-KCKEATENTLKEASVESEQITANLEEAHR 680
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
354-678 |
4.93e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 4.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 354 ELGRRdseIAGLKKERDlNQQRVQKLEAEVDQWQARMLVMEDQH-NSEIESLQKALGVAREDNRKLAMSLEQALQTNNHL 432
Cdd:COG1196 197 ELERQ---LEPLERQAE-KAERYRELKEELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 433 QTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELhAERIEALRKQFQTERETTKKVAQREVAELKKALDEANFRSV 512
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 513 EVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQ 592
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 593 RFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQIT 672
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
....*.
gi 1214581234 673 ANLEEA 678
Cdd:COG1196 512 AALLLA 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
212-506 |
1.01e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 212 QQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDtslQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAA 291
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEE---ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 292 LKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLKKE 368
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 369 RDLNQQRVQKLEAEVDQWQARMLVMEDQHNS-----------------EIESLQKALGVAREDNRKLAMSLEQALQTNNH 431
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEEleelieeleseleallnERASLEEALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1214581234 432 LQTKLDHIQEQLESKELE----RQNLETFKDRMTEESKVEAELHAERIEalrkqfqtERETTKKVAQREVAELKKALDE 506
Cdd:TIGR02168 913 LRRELEELREKLAQLELRleglEVRIDNLQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-612 |
2.72e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 270 VKSILERSKEELSRTVKCRNAALKeSQKLKEDLEAVEDREnkkvgnfqrqLAEAKEDNCKvtiMLENVLASHSKMQGALE 349
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAER-YQALLKEKREYEGYE----------LLKEKEALER---QKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 350 KVQIELGRRDSEIAGLKKERDLNQQRVQKL-EAEVDQWQARMLVMEdqhnSEIESLQKALGVAREDNRKLAMSLEQALQT 428
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELE----AEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 429 NNHLQTKLDHIQEQLESKELERQNLETfkdrMTEESKVEAELHAERIEALRKQFQTERETTKKVaQREVAELKKALDEAN 508
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTE----EYAELKEELEDLRAELEEVDKEFAETRDELKDY-REKLEKLKREINELK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 509 FRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKlhlsakannaQNIERMKQIEKELKQMELIKDQYQKKNYEQS 588
Cdd:TIGR02169 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE----------DKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
330 340
....*....|....*....|....
gi 1214581234 589 LSIQRFVCEMTNLQKEMQMLAKSQ 612
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQA 499
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
292-680 |
4.44e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 4.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 292 LKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKE-DNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERD 370
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 371 LNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKAlgvaREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELER 450
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK----AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 451 QNLETfkdRMTEESKVEAElHAERIEALRKQFQterETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEK 530
Cdd:PTZ00121 1439 KAEEA---KKADEAKKKAE-EAKKAEEAKKKAE---EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 531 ILESNK-------EKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQK 603
Cdd:PTZ00121 1512 ADEAKKaeeakkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1214581234 604 EMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 680
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-700 |
5.24e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 103 AQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQercnLEKELAKNKVDINTLTHNLQ 182
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE----LEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 183 TLEEENKHLADQMASLELQQVtsdyhgLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSftdtslqndhLRKMNKY 262
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIA------RLEERRRELEERLEELEEELAELEEELEELEEELEE----------LEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 263 LQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDREN---KKVGNFQRQLAEAKEDNCKVTIMLENVLA 339
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAelaAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 340 SHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLA 419
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 420 MSLEQALQTNNHLQTklDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAE 499
Cdd:COG1196 509 GVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 500 LKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQiklhLSAKANNAQNIERMKQIEKELKQMELIKDQ 579
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL----EAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 580 YQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATEN 659
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1214581234 660 TLKEASVESEQITANLEEAHRWFKHRfdglqLELTKNRLQR 700
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERE-----LERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
422-695 |
2.49e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 422 LEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQF-QTERETTKKvaQREVAEL 500
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 501 KKALDEANFRSVEVSRTNRELRQKLAEL-EKILESNKEKIKNQKTQIKlhlSAKANNAQNIERMKQIEKELKQMELIKDQ 579
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIA---SLERSIAEKERELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 580 YQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDasVRNKQQELHLEAeRKIRQELENRCQELEETVRH---LKKCKEA 656
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELED--LRAELEEVDKEF-AETRDELKDYREKLEKLKREineLKRELDR 410
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1214581234 657 TENTLKEASVESEQITANL---EEAHRWFKHRFDGLQLELTK 695
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIagiEAKINELEEEKEDKALEIKK 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
58-574 |
2.86e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 58 QEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKEL---LESTIARLRGELEASMQE 134
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERrreLEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 135 KKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMAslELQQVTSDYHGLAQQK 214
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR--AAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 215 VEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKE 294
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 295 SQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSE------IAGLKKE 368
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDevaaaaIEYLKAA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 369 RD-------LNQQRVQKLEAEVDQWQARML------VMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNhlqtk 435
Cdd:COG1196 570 KAgratflpLDKIRARAALAAALARGAIGAavdlvaSDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG----- 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 436 lDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELKKALDEAnfRSVEVS 515
Cdd:COG1196 645 -RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE--RLEEEL 721
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1214581234 516 RTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQME 574
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
51-677 |
2.93e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 51 KMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTAVQKELLEST--IARLRGEL 128
Cdd:TIGR00618 220 RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkAAPLAAHI 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 129 EASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEKELAKNKVdiNTLTHNLQTLEEENKHLADQMASL--ELQQVTSD 206
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIreISCQQHTL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 207 YHGLA--QQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNK------YLQTKYAQVKSILERSK 278
Cdd:TIGR00618 378 TQHIHtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQElqqryaELCAAAITCTAQCEKLE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 279 EELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTI-----------------MLENVLASH 341
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIhpnparqdidnpgpltrRMQRGEQTY 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 342 SKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLeaeVDQWQARMLVMEDQHNsEIESLQKALGVAREDNRKLAMS 421
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL---TQCDNRSKEDIPNLQN-ITVRLQDLTEKLSEAEDMLACE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 422 LEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTEREttkkvaqrevaelk 501
Cdd:TIGR00618 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQ-------------- 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 502 KALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELkqMELIKDQYQ 581
Cdd:TIGR00618 680 LALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 582 KKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTL 661
Cdd:TIGR00618 758 ARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRL 837
|
650
....*....|....*.
gi 1214581234 662 KEASVESEQITANLEE 677
Cdd:TIGR00618 838 EEKSATLGEITHQLLK 853
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
347-530 |
4.14e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 347 ALEKVQIELGRRDSEIAGLKKERDlnQQRVQKLEAEVDQWQARMlvmeDQHNSEIESLQKALGVAREDNRklamSLEQAL 426
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFA--QRRLELLEAELEELRAEL----ARLEAELERLEARLDALREELD----ELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 427 QTN-----NHLQTKLDHIQEQLESKELERQNLETFKDRMteesKVEAELHAERIEALRKQFQTERETtkkvAQREVAELK 501
Cdd:COG4913 333 RGNggdrlEQLEREIERLERELEERERRRARLEALLAAL----GLPLPASAEEFAALRAEAAALLEA----LEEELEALE 404
|
170 180
....*....|....*....|....*....
gi 1214581234 502 KALDEANFRSVEVSRTNRELRQKLAELEK 530
Cdd:COG4913 405 EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
64-678 |
5.99e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 5.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 64 LDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKR---------TAVQKEL--LESTIARLRGELEASM 132
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIgeLEAEIASLERSIAEKE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 133 QEKKSLLEEKERFQREVNKTEKEIVQercnLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQ-QVTSDYHGLA 211
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEE----LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 212 QQKVEKITESKNKLAYENGKLQIKVKQLEEQVQsftDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAA 291
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELA---DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 292 LKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQiELGRRDSEIAGLKKERDL 371
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVA-QLGSVGERYATAIEVAAG 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 372 NqqRVQKLEAEVDQWQARMLVMEDQHN---------SEIESLQKALGVARED------------NRKLAMSLEQALQTN- 429
Cdd:TIGR02169 547 N--RLNNVVVEDDAVAKEAIELLKRRKagratflplNKMRDERRDLSILSEDgvigfavdlvefDPKYEPAFKYVFGDTl 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 430 --NHLQTKLDHIQE----QLESKELERQNLET-------FKDRMTEESKVEAELHAERIEALRKQFQTerettkkvAQRE 496
Cdd:TIGR02169 625 vvEDIEAARRLMGKyrmvTLEGELFEKSGAMTggsraprGGILFSRSEPAELQRLRERLEGLKRELSS--------LQSE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 497 VAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNaqnIERMKQIEKELKQMELI 576
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV---KSELKELEARIEELEED 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 577 KDQYQKK--NYEQSLS---IQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQEL--------------- 636
Cdd:TIGR02169 774 LHKLEEAlnDLEARLShsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELqeqridlkeqiksie 853
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1214581234 637 --------------------ENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEA 678
Cdd:TIGR02169 854 keienlngkkeeleeeleelEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
128-456 |
8.15e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 8.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 128 LEASMQEKKSLLEE--------------------------------------KERFQREVNKTEK--EIVQERCNLEKEL 167
Cdd:TIGR02168 150 IEAKPEERRAIFEEaagiskykerrketerklertrenldrledilnelerqLKSLERQAEKAERykELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 168 AKNkvDINTLTHNLQTLEEENKHLADQMASLELQQVTSDyhglaqqkvEKITESKNKLAYENGKLQIKVKQLEEQVQSFT 247
Cdd:TIGR02168 230 LVL--RLEELREELEELQEELKEAEEELEELTAELQELE---------EKLEELRLEVSELEEEIEELQKELYALANEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 248 DTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELsrtvKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDN 327
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKL----DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 328 CKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVME-DQHNSEIESLQK 406
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1214581234 407 ALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETF 456
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
90-453 |
1.03e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 90 DHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNktekeivqercNLEKELAK 169
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS-----------ALRKDLAR 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 170 NKVDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDT 249
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELE-------------ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 250 SlqnDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEdrenkkvgnfqRQLAEAKEDNCK 329
Cdd:TIGR02168 805 L---DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA-----------AEIEELEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 330 VTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdqhnSEIESLQKALg 409
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE----VRIDNLQERL- 945
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1214581234 410 varedNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNL 453
Cdd:TIGR02168 946 -----SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
348-574 |
1.22e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 348 LEKVQIELGRRDSEIAGLKKERDLNQQR----------------VQKLEAEVDQWQARmLVMEDQHNSEIESLQKALGVA 411
Cdd:COG4913 619 LAELEEELAEAEERLEALEAELDALQERrealqrlaeyswdeidVASAEREIAELEAE-LERLDASSDDLAALEEQLEEL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 412 REDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTE---ESKVEAELHAERIEALRKQFQTERET 488
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDAVERELRENLEERIDA 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 489 TKKVAQREVAELKKALDEAN----FRSVEVSRTNRELRQKLAELEKILESN--------KEKIKNQKTQIKLHLSAKANN 556
Cdd:COG4913 778 LRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLDRLEEDGlpeyeerfKELLNENSIEFVADLLSKLRR 857
|
250 260
....*....|....*....|
gi 1214581234 557 AQNI--ERMKQIEKELKQME 574
Cdd:COG4913 858 AIREikERIDPLNDSLKRIP 877
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
101-687 |
1.84e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 101 QKAQDAEKRTAVQKELLEStiARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEK---ELAKNKVDINTL 177
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADA--AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKkkaDAAKKKAEEKKK 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 178 THNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKITESKNKLayENGKLQIKVKQLEEQVQSFTDTSLQNDHLR 257
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA--EEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 258 KMNKyLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDlEAVEDRENKKVGNFQRQLAEAKEDNCKVT--IMLE 335
Cdd:PTZ00121 1471 KADE-AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD-EAKKAEEAKKADEAKKAEEAKKADEAKKAeeKKKA 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 336 NVLASHSKMQGALEKVQIELGRRDSEiaglkkERDLNQQRVQKL-EAEVDQWQARMLVMEDQHNSEIESLQKAlgvarED 414
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKAEE------DKNMALRKAEEAkKAEEARIEEVMKLYEEEKKMKAEEAKKA-----EE 1617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 415 NRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKvEAELHAERIEALRKQFQTERETTKKVaQ 494
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK-KAEEDKKKAEEAKKAEEDEKKAAEAL-K 1695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 495 REVAELKKAldeanfrsVEVSRTNRELRQKLAELEKILESNKEKIKNQKtqiklhlsakannaqniermKQIEKELKQME 574
Cdd:PTZ00121 1696 KEAEEAKKA--------EELKKKEAEEKKKAEELKKAEEENKIKAEEAK--------------------KEAEEDKKKAE 1747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 575 LIKDQYQKKNyeqslSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELE---ETVRHLK 651
Cdd:PTZ00121 1748 EAKKDEEEKK-----KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEggkEGNLVIN 1822
|
570 580 590
....*....|....*....|....*....|....*.
gi 1214581234 652 KCKEATENTLKEASVESEQItanLEEAHRWFKHRFD 687
Cdd:PTZ00121 1823 DSKEMEDSAIKEVADSKNMQ---LEEADAFEKHKFN 1855
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
117-644 |
3.73e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 117 LESTIARLRGELE----------ASMQEKKSLLEEKERFQREVNKTEKEIVQERCNL---EKELAKNKVDINTLTHNLQT 183
Cdd:PRK02224 211 LESELAELDEEIEryeeqreqarETRDEADEVLEEHEERREELETLEAEIEDLRETIaetEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 184 LEEENKHLADQMASLELQQVTsdyhglAQQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSlqnDHLRKMNKYL 263
Cdd:PRK02224 291 LEEERDDLLAEAGLDDADAEA------VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA---DDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 264 QTKYAQVKSILERSKEELSRtvkcRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSK 343
Cdd:PRK02224 362 REEAAELESELEEAREAVED----RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 344 MQGALEKVQ--IELGR--------RDSEIAGLKKERDlnqQRVQKLEAEVDQwqarmlvMEDQHNSEIESLQKAlgvarE 413
Cdd:PRK02224 438 ARERVEEAEalLEAGKcpecgqpvEGSPHVETIEEDR---ERVEELEAELED-------LEEEVEEVEERLERA-----E 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 414 DNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDrmteESKVEAELHAERIEALRKQFQTERETTKKVa 493
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA----ELEAEAEEKREAAAEAEEEAEEAREEVAEL- 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 494 QREVAELKKALDEANfrsvevsrTNRELRQKLAELEKILESNKEKIKN---QKTQIKLHLSAKAnnaqniERMKQIEKEL 570
Cdd:PRK02224 578 NSKLAELKERIESLE--------RIRTLLAAIADAEDEIERLREKREAlaeLNDERRERLAEKR------ERKRELEAEF 643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1214581234 571 KQMELIKDQYQKKNYEQSLS-----IQRFVCEMTNLQKEMQMlaksqydasVRNKQQELhlEAERKIRQELENRCQELE 644
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEqveekLDELREERDDLQAEIGA---------VENELEEL--EELRERREALENRVEALE 711
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
360-573 |
5.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 360 SEIAGLKKERDLNQQRVQKLEAEVDQWQARmlvmEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHI 439
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 440 QEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQReVAELKKALDEANFRSVEVSRTNR 519
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ-AEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1214581234 520 ELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQM 573
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
117-669 |
7.99e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 7.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 117 LESTIARLRGELeasmqekkslleekerfqREVNKTEKEIVQErcnLEKELAKNKVDINTLTHNLQTLEEENKHLADQma 196
Cdd:pfam15921 322 LESTVSQLRSEL------------------REAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQ-- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 197 sleLQQVTSDYHglAQQKVEKITESKNKLAYENGklqikvkqleeqvqsfTDTSLQNDHLRKMNKYLQTKYAQVKSILER 276
Cdd:pfam15921 379 ---LQKLLADLH--KREKELSLEKEQNKRLWDRD----------------TGNSITIDHLRRELDDRNMEVQRLEALLKA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 277 SKEELSRTVKCRNAALkesQKLKEDLEAVEDReNKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELG 356
Cdd:pfam15921 438 MKSECQGQMERQMAAI---QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 357 RRDSEIAGLKKERDLNQQRVQKLEAEVDQWQaRMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKL 436
Cdd:pfam15921 514 ATNAEITKLRSRVDLKLQELQHLKNEGDHLR-NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 437 DHIQEQLESKELERQNLETFKD----RMTEESKVEAELHAERIEALRKQFQTERETTKKVAQRE--VAELKKALDEANFR 510
Cdd:pfam15921 593 AQLEKEINDRRLELQEFKILKDkkdaKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDqlLNEVKTSRNELNSL 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 511 SVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQiklhlsakannaqnierMKQIEKELKQMELIKDQYQKKNYEQSLS 590
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE-----------------LEQTRNTLKSMEGSDGHAMKVAMGMQKQ 735
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1214581234 591 IQRFVCEMTNLQKEMQMLAKSQYDAsvrNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKeATENTLKEASVESE 669
Cdd:pfam15921 736 ITAKRGQIDALQSKIQFLEEAMTNA---NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLR-SQERRLKEKVANME 810
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
114-677 |
1.14e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 114 KELLESTIARlRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEK---ELAKNKVDINTLTHNLQTLEEENKH 190
Cdd:PRK03918 178 IERLEKFIKR-TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKevkELEELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 191 LADQMASLELQqvtsdyhglAQQKVEKITESKNKLAyENGKLQIKVKQLEEQVQSFTDTslqNDHLRKMNKYLQTKYAQV 270
Cdd:PRK03918 257 LEEKIRELEER---------IEELKKEIEELEEKVK-ELKELKEKAEEYIKLSEFYEEY---LDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 271 KSI------LERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKM 344
Cdd:PRK03918 324 NGIeerikeLEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 345 QGALEKVQIELGRRDSEIAGLKKErdLNQQRVQKLEAEV------DQWQARMLVMEDQHNSEIESLQKALGVAREDNRKL 418
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKA--IEELKKAKGKCPVcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 419 AMSLEQALQTNNHLqTKLDHIQEQLES--KELERQNLETFKDRMTEESKVEAEL------------HAERIEALRKQfQT 484
Cdd:PRK03918 482 LRELEKVLKKESEL-IKLKELAEQLKEleEKLKKYNLEELEKKAEEYEKLKEKLiklkgeikslkkELEKLEELKKK-LA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 485 ERETTKKVAQREVAELKKALDEANFRSV-EVSRTNRELRQ------KLAELEKILESNKEKIKNQKTQIKlhlSAKANNA 557
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVeELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELD---KAFEELA 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 558 QNIERMKQIEKELKQMELIKDQYQKKN-YEQSLSIQRfvcEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQEL 636
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYSEEEYEElREEYLELSR---ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1214581234 637 EN------RCQELEETVRHLKkcKEATENTLKEASVESEQITANLEE 677
Cdd:PRK03918 714 EKlekaleRVEELREKVKKYK--ALLKERALSKVGEIASEIFEELTE 758
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
89-394 |
1.24e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 89 LDHLILEHNQCIQKAQDAEKRTAVQKELLESTIARLRGELEASMQEKKSLLEEKERFQREVNktekEIVQERCNLEKELA 168
Cdd:TIGR02169 644 LEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD----ELSQELSDASRKIG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 169 KNKVDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTD 248
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLE-------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 249 tslqndhlrkmnKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDrenkKVGNFQRQLAEAKEDNC 328
Cdd:TIGR02169 787 ------------RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK----EIQELQEQRIDLKEQIK 850
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1214581234 329 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERD-------LNQQRVQKLEAEVDQWQARMLVME 394
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDeleaqlrELERKIEELEAQIEKKRKRLSELK 923
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
55-529 |
2.16e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 55 QTFQEQNLLLDAaHASITNELQTVQNEKTQLQAHLDHLILEHNQCIQKAQDAEKRTavqkELLESTIARLRGELEASMQE 134
Cdd:PRK02224 234 ETRDEADEVLEE-HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERL----EELEEERDDLLAEAGLDDAD 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 135 KKSLLEEKERFQREVNKTEKEIVQERCNLEkelAKNKvDINTLTHNLQTLEEENKHLADQMASLElqqvtsdyhglaqqk 214
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQ---AHNE-EAESLREDADDLEERAEELREEAAELE--------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 215 vEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKyaqvKSILERSKEELSRTVKCRNAALKE 294
Cdd:PRK02224 370 -SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE----RDELREREAELEATLRTARERVEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 295 SQKLKE---------------DLEAVEDREnKKVGNFQRQLAEAKEDNCKVTIMLENvLASHSKMQGALEKVQIELGRRD 359
Cdd:PRK02224 445 AEALLEagkcpecgqpvegspHVETIEEDR-ERVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLE 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 360 SEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAmSLEQALQTNNHLQTKLDHI 439
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-ELKERIESLERIRTLLAAI 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 440 ----------QEQLESK-ELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQ--REVAELKKALdE 506
Cdd:PRK02224 602 adaedeierlREKREALaELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEklDELREERDDL-Q 680
|
490 500
....*....|....*....|....
gi 1214581234 507 ANFRSVEVSRTNRE-LRQKLAELE 529
Cdd:PRK02224 681 AEIGAVENELEELEeLRERREALE 704
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
110-673 |
2.89e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 110 TAVQKEL--LESTIARLRGELEASMQEKKSLLEEKErfqrevNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEE 187
Cdd:pfam15921 220 SAISKILreLDTEISYLKGRIFPVEDQLEALKSESQ------NKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 188 NKHLADQMASLELQ--QVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQV----QSFTDTSLQNDHLRKMNK 261
Cdd:pfam15921 294 ANSIQSQLEIIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESG 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 262 YLQTKYAQVKSILERSKEELSRTvkcrnaalkesqklKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASH 341
Cdd:pfam15921 374 NLDDQLQKLLADLHKREKELSLE--------------KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMK 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 342 SKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQH------NSEIESLQKALGVAREDN 415
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEI 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 416 RKLAMSLEQALQTNNHLQTKLDHIQEQleskeleRQNLETFKDRMTEESKVeaelhaerIEALRKQFQTereTTKKVAQR 495
Cdd:pfam15921 520 TKLRSRVDLKLQELQHLKNEGDHLRNV-------QTECEALKLQMAEKDKV--------IEILRQQIEN---MTQLVGQH 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 496 EvaelkkalDEANFRSVEVSRTNRELRQKLAELEKIlesnkEKIKNQKTQIKLHLSAKANNAQnIERMKQIEKELKQMEL 575
Cdd:pfam15921 582 G--------RTAGAMQVEKAQLEKEINDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRA 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 576 IKDQYQKKNYEQSlSIQRFVCEMTNLQKEMQMLAKSqydasVRNKQQELHLEAErKIRQELENRCQELEETVRHLKKCKE 655
Cdd:pfam15921 648 VKDIKQERDQLLN-EVKTSRNELNSLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEG 720
|
570
....*....|....*...
gi 1214581234 656 ATENTLKEASVESEQITA 673
Cdd:pfam15921 721 SDGHAMKVAMGMQKQITA 738
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
373-670 |
3.06e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 373 QQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHlqtKLDHIQEQLESKELERQN 452
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER---ELERIRQEERKRELERIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 453 -----LETFKDRMTEESKVEAELHAERI----EALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRElrq 523
Cdd:pfam17380 367 qeeiaMEISRMRELERLQMERQQKNERVrqelEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEE--- 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 524 KLAELEKILESNKEKiknqktqiklhlsakannAQNIERMKQIEKELKQMELIKDQYQKKNYEQSlSIQRFVCEMTNLQK 603
Cdd:pfam17380 444 RAREMERVRLEEQER------------------QQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELEER 504
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1214581234 604 EMQMLAKSQ----YDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQ 670
Cdd:pfam17380 505 KQAMIEEERkrklLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
418-632 |
3.76e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 418 LAMSLEQALQTNNHLQTKLDHIQEQLESKElerQNLETFKDR-MTEESKVEAELHAERIEALRKQfQTERETTKKVAQRE 496
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAE---AALEEFRQKnGLVDLSEEAKLLLQQLSELESQ-LAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 497 VAELKKALDEANFRSVEVSRTNR---------ELRQKLAELEKILESN-------KEKIKNQKTQIK-----LHLSAKAN 555
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPViqqlraqlaELEAELAELSARYTPNhpdvialRAQIAALRAQLQqeaqrILASLEAE 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1214581234 556 NAQNIERMKQIEKELKQmelikdqyQKKNYEQSLSIQRfvcEMTNLQKEMQmLAKSQYDaSVRNKQQELHLEAERKI 632
Cdd:COG3206 322 LEALQAREASLQAQLAQ--------LEARLAELPELEA---ELRRLEREVE-VARELYE-SLLQRLEEARLAEALTV 385
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
344-622 |
4.85e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 43.67 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 344 MQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQ-----KALGVAREDNRKL 418
Cdd:NF012221 1458 TAGEVIALSFDFARRAGLSTNNGIEVLWNGEVVFASSGDASAWQQKTLKLTAKAGSNRLEFKgtghnDGLGYILDNVVAT 1537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 419 AMSLEQALQTNNHLqTKLDHIQEQL---ESKELERQNLETFKDRMTEE-SKVEAELHAERIEALRKQFQTERETTKKVAQ 494
Cdd:NF012221 1538 SESSQQADAVSKHA-KQDDAAQNALadkERAEADRQRLEQEKQQQLAAiSGSQSQLESTDQNALETNGQAQRDAILEESR 1616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 495 ---REVAELKKALDEANFRSVEVSRTNRELRQKLAelEKILESNKEKIKNQktqiKLHLSAKANNA--QNIERMKQIEKE 569
Cdd:NF012221 1617 avtKELTTLAQGLDALDSQATYAGESGDQWRNPFA--GGLLDRVQEQLDDA----KKISGKQLADAkqRHVDNQQKVKDA 1690
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 570 LKQME--LIKDQYQKKNYEQSLSIQRFVCEMTNL-----QKEMQMlAKSQYDASVRNKQQ 622
Cdd:NF012221 1691 VAKSEagVAQGEQNQANAEQDIDDAKADAEKRKDdalakQNEAQQ-AESDANAAANDAQS 1749
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
358-533 |
5.41e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 358 RDSEIAGLKKERDLNQQ--RVQ-KLEAEVDQWQARMLVMEDQhnseieSLQKALGVAREDnrKLAMSLEQALQTNNHLQT 434
Cdd:COG2433 335 RDALAAALKAYDAYKNKfeRVEkKVPPDVDRDEVKARVIRGL------SIEEALEELIEK--ELPEEEPEAEREKEHEER 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 435 KLDHIQEQLESKELERQNLETFKDRMTEE--------SKVEAELHAERIEAlRKQFQTERETTKKvaQREVAELKKALDE 506
Cdd:COG2433 407 ELTEEEEEIRRLEEQVERLEAEVEELEAEleekderiERLERELSEARSEE-RREIRKDREISRL--DREIERLERELEE 483
|
170 180
....*....|....*....|....*..
gi 1214581234 507 ANfrsvevsRTNRELRQKLAELEKILE 533
Cdd:COG2433 484 ER-------ERIEELKRKLERLKELWK 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
64-389 |
9.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 9.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 64 LDAAHASITNELQTVQNEKTQLQAHLDhLILEHNQCIQKAQDAEKRTAV-QKELLESTIARLRGELE---ASMQEKKSLL 139
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAERYQA-LLKEKREYEGYELLKEKEALErQKEAIERQLASLEEELEkltEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 140 EEKERFQREVN-KTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQqvTSDYHGLAQQKVEKI 218
Cdd:TIGR02169 268 EEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE--IDKLLAEIEELEREI 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 219 TESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKL 298
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 299 KEDLEAVEDRENkkvgnfqrQLAEAKEDNCKVTIMLENVLASHSKMqgaLEKVQIELGRRDSEIAGLKKERDLNQQRVQK 378
Cdd:TIGR02169 426 NAAIAGIEAKIN--------ELEEEKEDKALEIKKQEWKLEQLAAD---LSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
330
....*....|.
gi 1214581234 379 LEAEVDQWQAR 389
Cdd:TIGR02169 495 AEAQARASEER 505
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
295-532 |
1.57e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 295 SQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGA-LEKVQIELGRRD---SEIAGLKKERD 370
Cdd:pfam12128 285 SAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPswqSELENLEERLK 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 371 LNQQRVQKLEAEvdqWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQT-NNHLQTKLDH-IQEQLESKEL 448
Cdd:pfam12128 365 ALTGKHQDVTAK---YNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQAlESELREQLEAgKLEFNEEEYR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 449 ERQNLETFKDRM-----TEESKVEAELHAERIEALRKQfQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQ 523
Cdd:pfam12128 442 LKSRLGELKLRLnqataTPELLLQLENFDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
....*....
gi 1214581234 524 KLAELEKIL 532
Cdd:pfam12128 521 ALDELELQL 529
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
74-682 |
1.64e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 74 ELQTVQNEKTQLQAHLDHLILEHNQ-CIQKAQDAEKRTAVQKELLESTIARLR-----GELEASMQEKKSLLEEKERFQR 147
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQlCEEKNALQEQLQAETELCAEAEEMRARlaarkQELEEILHELESRLEEEEERSQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 148 EVNKTEKEIVQercnlekelaknkvdintlthNLQTLEEENKHLADQMASLELQQVTSDyhglaqQKVEKITESKNKLAY 227
Cdd:pfam01576 93 QLQNEKKKMQQ---------------------HIQDLEEQLDEEEAARQKLQLEKVTTE------AKIKKLEEDILLLED 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 228 ENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILE--RSKEELSRtvkcrnaalKESQKLKEDLEAV 305
Cdd:pfam01576 146 QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEerLKKEEKGR---------QELEKAKRKLEGE 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 306 EDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKerDLNQQRVQKLEAEV-- 383
Cdd:pfam01576 217 STDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQE--DLESERAARNKAEKqr 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 384 ----DQWQARMLVMED-------------QHNSEIESLQKALgvaREDNRKLAMSLEQALQTNNhlqTKLDHIQEQLESK 446
Cdd:pfam01576 295 rdlgEELEALKTELEDtldttaaqqelrsKREQEVTELKKAL---EEETRSHEAQLQEMRQKHT---QALEELTEQLEQA 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 447 ELERQNLETFKDRMTEESkveAELHAERieALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLA 526
Cdd:pfam01576 369 KRNKANLEKAKQALESEN---AELQAEL--RTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELE 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 527 ELEKILESNKEK-IKNQK--TQIKLHLSAKANNAQNIERMK-QIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQ 602
Cdd:pfam01576 444 SVSSLLNEAEGKnIKLSKdvSSLESQLQDTQELLQEETRQKlNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQ 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 603 KEMQMLAKSQYDASVRNKQQElhlEAERKIRQELENRCQELEE---TVRHLKKCKEATENTLKEASVE---SEQITANLE 676
Cdd:pfam01576 524 AQLSDMKKKLEEDAGTLEALE---EGKKRLQRELEALTQQLEEkaaAYDKLEKTKNRLQQELDDLLVDldhQRQLVSNLE 600
|
....*.
gi 1214581234 677 EAHRWF 682
Cdd:pfam01576 601 KKQKKF 606
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
415-546 |
1.93e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 415 NRKLA-----MSLEQalQTNNHLQTKLDHIQEQLESKELERQNLETFKDrmtEESKVEAELhAERIEALRKQFQTERETT 489
Cdd:PRK09039 59 NSQIAeladlLSLER--QGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAA-EGRAGELAQELDSEKQVS 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1214581234 490 KKvAQREVAELKKALDEanfrsvevsrtnreLRQKLAELEKILESNKEKIKNQKTQI 546
Cdd:PRK09039 133 AR-ALAQVELLNQQIAA--------------LRRQLAALEAALDASEKRDRESQAKI 174
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
81-572 |
1.93e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 81 EKTQLQAHLDHLIlEHNQCIQKAQDAEKRTAVQKELLEStIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQER 160
Cdd:COG4913 219 EEPDTFEAADALV-EHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 161 C-NLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSdyhglAQQKVEKITESKNKLAYENGKLQIKVKQL 239
Cdd:COG4913 297 LeELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ-----LEREIERLERELEERERRRARLEALLAAL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 240 EEQV----QSFTDTSLQNDHLRkmnkylqtkyAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDREN---KK 312
Cdd:COG4913 372 GLPLpasaEEFAALRAEAAALL----------EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 313 VGNFQRQLAEA---KEDNCKVTIMLENVLASHSKMQGALEKV-----------------------QIELGRR-DSEIAGL 365
Cdd:COG4913 442 LLALRDALAEAlglDEAELPFVGELIEVRPEEERWRGAIERVlggfaltllvppehyaaalrwvnRLHLRGRlVYERVRT 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 366 KKERDLNQQR-----VQKLEAEVDQWQA--RMLVME-------------DQHNSEI--ESLQKALGVARE---------- 413
Cdd:COG4913 522 GLPDPERPRLdpdslAGKLDFKPHPFRAwlEAELGRrfdyvcvdspeelRRHPRAItrAGQVKGNGTRHEkddrrrirsr 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 414 -----DNRKLAMSLEQALQTnnhLQTKLDHIQEQLESKELERQNLETFKD-----RMTEESKVEAELHAERIEALRKQFQ 483
Cdd:COG4913 602 yvlgfDNRAKLAALEAELAE---LEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREIAELEAELE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 484 TERETTKKVA--QREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKI----KNQKTQIKLHLSAKANNA 557
Cdd:COG4913 679 RLDASSDDLAalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeaaeDLARLELRALLEERFAAA 758
|
570
....*....|....*
gi 1214581234 558 QNIERMKQIEKELKQ 572
Cdd:COG4913 759 LGDAVERELRENLEE 773
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
158-499 |
2.08e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 158 QERCNLEKELAKNKVDINT-LTHNLQTLEEENKHLADQMASLELQQVTSDYH--GLAQQKVEKITESKNK-LAYENGKLQ 233
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSkLQSNTDENGQLENTSLRTVMELPQKSTSSDDDhnRASMQRDEAIAAIDNEqQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 234 IKVKQLEEQVQSFTDTSlqnDHLRKMNKYLQTKYAQVKSILeRSKEELSRTVKC-------RNAALKESQKLKEDLEAVE 306
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAE---KNILLLNQARLQALEDLEKIL-TEKEALQGKINIlemrlseTDARIKLAAQEKIHVEILE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 307 DRENKKVGNFQRQLAEAKEDNCKV-----TIMLENVLAShSKMQgALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEA 381
Cdd:PLN02939 201 EQLEKLRNELLIRGATEGLCVHSLskeldVLKEENMLLK-DDIQ-FLKAELIEVAETEERVFKLEKERSLLDASLRELES 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 382 EVDQWQARMLVME----DQHNSEIESLQKALGVAREDNRKLAMSLEQalqtNNHLQTKLDHIQEQLESK----------E 447
Cdd:PLN02939 279 KFIVAQEDVSKLSplqyDCWWEKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLKEAnvskfssykvE 354
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1214581234 448 LERQNLETFKDRM---TEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAE 499
Cdd:PLN02939 355 LLQQKLKLLEERLqasDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPAD 409
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
367-548 |
2.46e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 367 KERDLNQQRVQKLEAEVDQWQArMLVMEDQHNSEIESLQKALGVAREDNRKL--AMSLEQALQTNNHLQTKLDHIQEQLE 444
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREELEKLekLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 445 SKELERQNLETFKDRMTEESKVEAELHAErIEALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQK 524
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEE-LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180
....*....|....*....|....
gi 1214581234 525 LAELEKILESNKEKIKNQKTQIKL 548
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLL 252
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
357-562 |
2.80e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 357 RRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNseIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKL 436
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 437 DHIQEQLESKELE-------------RQNLETFKDRMTEESKVEAELH------AERIEALRKQFQTER-------ETTK 490
Cdd:COG3206 243 AALRAQLGSGPDAlpellqspviqqlRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAqrilaslEAEL 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1214581234 491 KVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEkILESNKEKIKNQKTQIKLHLSAKANNAQNIER 562
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE-VARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
139-584 |
2.85e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 139 LEEKERFQREVNKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKI 218
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 219 TESKNklayengkLQIKVKQLEEQVQsftdtslqnDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKL 298
Cdd:COG4717 156 EELRE--------LEEELEELEAELA---------ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 299 KEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQK 378
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 379 LEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFkd 458
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALL-- 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 459 rmteeskveAELHAERIEALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEK 538
Cdd:COG4717 377 ---------AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1214581234 539 IKNQKTQIklhlsakannAQNIERMKQIEKELKQMELIKDQYQKKN 584
Cdd:COG4717 448 LEELREEL----------AELEAELEQLEEDGELAELLQELEELKA 483
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
434-532 |
4.01e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 434 TKLDHIQEQLESKELERQNLETFKDRMTEE--SKVEAELHA--ERIEALRKQFQTEREttkkvAQREVAELKKALDEANF 509
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFErlAELRDELAEleEELEALKARWEAEKE-----LIEEIQELKEELEQRYG 485
|
90 100
....*....|....*....|...
gi 1214581234 510 RSVEVSRTNRELRQKLAELEKIL 532
Cdd:COG0542 486 KIPELEKELAELEEELAELAPLL 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-246 |
5.00e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 6 ASEKAQVLNDQLTKKCSELSCMLQTVTMEKARIIADHQAILQVEQKMmtQTFQEQNLLLDAAHASITNELQTVQNEKTQL 85
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI--EQLKEELKALREALDELRAELTLLNEEAANL 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 86 QAHLDHLILEHNQCIQKAQDAEKRTAVQKELLEStIARLRGELEASMQEKKSLLEEKERFQREVNKTEKEIVQERCNLEK 165
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 166 ELAKNKVDINTLTHNLQTLEEENKHLADQMASLE--LQQVTSDYHGLAQQKVEKITESKNKLAYENGKLQIKVKQLEEQV 243
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEvrIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
...
gi 1214581234 244 QSF 246
Cdd:TIGR02168 982 KEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
274-539 |
7.63e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 274 LERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEdnckvtimLENVLASHSKMQGALEKVQI 353
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINE--------ISSELPELREELEKLEKEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 354 ELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARM--LVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNH 431
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIeeLKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214581234 432 LQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELH---------AERIEALRKQFQTERETTKKVAQREVAELKK 502
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEkrleeleerHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391
|
250 260 270
....*....|....*....|....*....|....*..
gi 1214581234 503 ALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKI 539
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
|
|
| |
