|
Name |
Accession |
Description |
Interval |
E-value |
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
124-335 |
8.68e-79 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 238.21 E-value: 8.68e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 124 FLLERVSISAPSsDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDfgpHGVLFLPQKPFFT 203
Cdd:cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPYLP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 204 DGTLREQVIYPlkevypdsgsadderilrflelaglsnlvartegldqqvdwnWYDVLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:cd03223 77 LGTLREQLIYP------------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1216866492 284 LDEATSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKLCGGGRW 335
Cdd:cd03223 115 LDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-340 |
1.98e-75 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 242.41 E-value: 1.98e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 1 MRSLLLSTVGINTF----DYLGSILSYVVIAIPIFSGvygDLSPAELSTLVSknAFVciYLISCFTQLIDLSTTLSDVAG 76
Cdd:COG4178 258 WRRLIRRQRNLTFFttgyGQLAVIFPILVAAPRYFAG---EITLGGLMQAAS--AFG--QVQGALSWFVDNYQSLAEWRA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 77 YTHRIGQLRETLLDMSLKSQDCEILGESEwgldtppgwpaaepaDTAFLLERVSISAPSsDKPLIKDLSLKISEGQSLLI 156
Cdd:COG4178 331 TVDRLAGFEEALEAADALPEAASRIETSE---------------DGALALEDLTLRTPD-GRPLLEDLSLSLKPGERLLI 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 157 TGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgPHG--VLFLPQKPFFTDGTLREQVIYPLkevypDSGSADDERILRFL 234
Cdd:COG4178 395 TGPSGSGKSTLLRAIAGLWPYGSGRIAR-----PAGarVLFLPQRPYLPLGTLREALLYPA-----TAEAFSDAELREAL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 235 ELAGLSNLVARtegLDQQVDWNwyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYR-IGQQL-GMTFIS 312
Cdd:COG4178 465 EAVGLGHLAER---LDEEADWD--QVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQlLREELpGTTVIS 539
|
330 340
....*....|....*....|....*...
gi 1216866492 313 VGHRQSLEKFHSLVLKLCGGGRWELMRI 340
Cdd:COG4178 540 VGHRSTLAAFHDRVLELTGDGSWQLLPA 567
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
16-337 |
9.91e-61 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 205.75 E-value: 9.91e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 16 YLGSILSYVVIAIPIFSGV---YGDLSPAELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGQLRETLLDMS 92
Cdd:TIGR00954 335 YTWSAVGLVAVSIPIFDKThpaFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 93 L----KSQDCEILGESEWGLDTP--PGWPAAEPADTAFLLERVSISAPSSDKpLIKDLSLKISEGQSLLITGNTGTGKTS 166
Cdd:TIGR00954 415 SgnfkRPRVEEIESGREGGRNSNlvPGRGIVEYQDNGIKFENIPLVTPNGDV-LIESLSFEVPSGNNLLICGPNGCGKSS 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 167 LLRVLGGLWtSTRGSVqmLTDFGPHGVLFLPQKPFFTDGTLREQVIYPL-KEVYPDSGSADDERIlRFLELAGLSNLVAR 245
Cdd:TIGR00954 494 LFRILGELW-PVYGGR--LTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDsSEDMKRRGLSDKDLE-QILDNVQLTHILER 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 246 TEGLDQQVDWNwyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSL 325
Cdd:TIGR00954 570 EGGWSAVQDWM--DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEY 647
|
330
....*....|..
gi 1216866492 326 VLKLCGGGRWEL 337
Cdd:TIGR00954 648 LLYMDGRGGYQF 659
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
131-315 |
1.30e-30 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 115.30 E-value: 1.30e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 131 ISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHG----VLFLPQKPFF 202
Cdd:COG4619 6 LSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIyldgKPLSAMPPPEwrrqVAYVPQEPAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 TDGTLREQVIYPLKevyPDSGSADDERILRFLELAGLSNLVartegLDQQVDwnwydVLSPGEMQRLSFARLFYLQPKYA 282
Cdd:COG4619 86 WGGTVRDNLPFPFQ---LRERKFDRERALELLERLGLPPDI-----LDKPVE-----RLSGGERQRLALIRALLLQPDVL 152
|
170 180 190
....*....|....*....|....*....|....*..
gi 1216866492 283 VLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:COG4619 153 LLDEPTSALdpenTRRVEELLREYLAEEGRAVLWVSH 189
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1-319 |
6.83e-29 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 117.24 E-value: 6.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 1 MRSLLLSTVgINTFDYLGSILSYVVIaipIFSGVY----GDLSpaeLSTLVsknAFVCI--YLISCFTQLIDLSTTLSDV 74
Cdd:COG2274 372 FKLRRLSNL-LSTLSGLLQQLATVAL---LWLGAYlvidGQLT---LGQLI---AFNILsgRFLAPVAQLIGLLQRFQDA 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 75 AGYTHRIGQLretlldmslksqdceilgesewgLDTPPGWPAAEPADT------AFLLERVSISAPSSDKPLIKDLSLKI 148
Cdd:COG2274 442 KIALERLDDI-----------------------LDLPPEREEGRSKLSlprlkgDIELENVSFRYPGDSPPVLDNISLTI 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 149 SEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH------GVlfLPQKPFFTDGTLREQVIYplkev 218
Cdd:COG2274 499 KPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIdgidLRQIDPAslrrqiGV--VLQDVFLFSGTIRENITL----- 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 219 ypDSGSADDERILRFLELAGLSNLVAR-TEGLDQQVDwNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVES 297
Cdd:COG2274 572 --GDPDATDEEIIEAARLAGLHDFIEAlPMGYDTVVG-EGGSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEA 648
|
330 340
....*....|....*....|....
gi 1216866492 298 ELYRIGQQL--GMTFISVGHRQSL 319
Cdd:COG2274 649 IILENLRRLlkGRTVIIIAHRLST 672
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
126-319 |
7.29e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 108.45 E-value: 7.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGP----HGVLFLP 197
Cdd:cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLdgtdIRQLDPadlrRNIGYVP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QKPFFTDGTLREQVIYplkevypDSGSADDERILRFLELAGLSNLVAR-TEGLDQQVDWNWYDvLSPGEMQRLSFARLFY 276
Cdd:cd03245 85 QDVTLFYGTLRDNITL-------GAPLADDERILRAAELAGVTDFVNKhPNGLDLQIGERGRG-LSGGQRQAVALARALL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1216866492 277 LQPKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHRQSL 319
Cdd:cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLlgDKTLIIITHRPSL 201
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
110-319 |
2.34e-25 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 106.60 E-value: 2.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 110 TPPGWPAAEPADTAFLLERVSISAPSSDkPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----L 185
Cdd:TIGR02857 308 LAGKAPVTAAPASSLEFSGVSVAYPGRR-PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVngvpL 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 186 TDFGPHG----VLFLPQKPFFTDGTLREQVIYPLKEvypdsgsADDERILRFLELAGLSNLV-ARTEGLDQQVDWNWYDv 260
Cdd:TIGR02857 387 ADADADSwrdqIAWVPQHPFLFAGTIAENIRLARPD-------ASDAEIREALERAGLDEFVaALPQGLDTPIGEGGAG- 458
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 261 LSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHRQSL 319
Cdd:TIGR02857 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALaqGRTVLLVTHRLAL 519
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
126-319 |
3.82e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 106.00 E-value: 3.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSsDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH----GVLFLP 197
Cdd:COG4988 339 LEDVSFSYPG-GRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSIlingVDLSDLDPAswrrQIAWVP 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QKPFFTDGTLREQviypLKEVYPDsgsADDERILRFLELAGLSNLVAR-TEGLDQQVD---WNwydvLSPGEMQRLSFAR 273
Cdd:COG4988 418 QNPYLFAGTIREN----LRLGRPD---ASDEELEAALEAAGLDEFVAAlPDGLDTPLGeggRG----LSGGQAQRLALAR 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1216866492 274 LFYLQPKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHRQSL 319
Cdd:COG4988 487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLakGRTVILITHRLAL 534
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
126-316 |
1.09e-24 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 99.46 E-value: 1.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH------GVLF 195
Cdd:cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVdgkdLTKLSLKelrrkvGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 196 lpQKP---FFTDgTLREQVIYPLkEVYPDSGSADDERILRFLELAGLSNLvartegldqqVDWNWYDvLSPGEMQRLSFA 272
Cdd:cd03225 82 --QNPddqFFGP-TVEEEVAFGL-ENLGLPEEEIEERVEEALELVGLEGL----------RDRSPFT-LSGGQKQRVAIA 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1216866492 273 RLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQlGMTFISVGHR 316
Cdd:cd03225 147 GVLAMDPDILLLDEPTAGLdpagRRELLELLKKLKAE-GKTIIIVTHD 193
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
126-319 |
1.98e-24 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 97.45 E-value: 1.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHG----VLFLP 197
Cdd:cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIlidgVDLRDLDLESlrknIAYVP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QKPFFTDGTLREqviyplkevypdsgsadderilrflelaglsNLvartegldqqvdwnwydvLSPGEMQRLSFARLFYL 277
Cdd:cd03228 83 QDPFLFSGTIRE-------------------------------NI------------------LSGGQRQRIAIARALLR 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1216866492 278 QPKYAVLDEATSAL---TE-EVESELYRIGQqlGMTFISVGHRQSL 319
Cdd:cd03228 114 DPPILILDEATSALdpeTEaLILEALRALAK--GKTVIVIAHRLST 157
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
126-332 |
8.58e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 96.13 E-value: 8.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---------LTDFGPHgVLFL 196
Cdd:cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLdgadisqwdPNELGDH-VGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 197 PQKPFFTDGTLREqviyplkevypdsgsadderilrflelaglsnlvartegldqqvdwnwyDVLSPGEMQRLSFARLFY 276
Cdd:cd03246 82 PQDDELFSGSIAE-------------------------------------------------NILSGGQRQRLGLARALY 112
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866492 277 LQPKYAVLDEATSALTEEVESELYRIGQQL---GMTFISVGHRQSLEKFHSLVLKLCGG 332
Cdd:cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALkaaGATRIVIAHRPETLASADRILVLEDG 171
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1-316 |
1.27e-23 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 101.39 E-value: 1.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 1 MRSLLLSTVGINTFDYLGSILSYVVIAIPIFSGVYGDLSPAELSTLVSknafvciYLISCFTQLIDLSTTLSDV---AGY 77
Cdd:COG1132 238 LRAARLSALFFPLMELLGNLGLALVLLVGGLLVLSGSLTVGDLVAFIL-------YLLRLFGPLRQLANVLNQLqraLAS 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 78 THRIgqlrETLLDMSLKSQDceilgesewgldtPPGWPAAEPADTAFLLERVSISAPSsDKPLIKDLSLKISEGQSLLIT 157
Cdd:COG1132 311 AERI----FELLDEPPEIPD-------------PPGAVPLPPVRGEIEFENVSFSYPG-DRPVLKDISLTIPPGETVALV 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 158 GNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPHG----VLFLPQKPFFTDGTLREQVIYPLKEvypdsgsADDER 229
Cdd:COG1132 373 GPSGSGKSTLVNLLLRFYDPTSGRILIdgvdIRDLTLESlrrqIGVVPQDTFLFSGTIRENIRYGRPD-------ATDEE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 230 ILRFLELAGLSNLVAR-TEGLDQQVDWNWYDvLSPGEMQRLSFARLFYLQPKYAVLDEATSAL---TE-EVESELYRIGQ 304
Cdd:COG1132 446 VEEAAKAAQAHEFIEAlPDGYDTVVGERGVN-LSGGQRQRIAIARALLKDPPILILDEATSALdteTEaLIQEALERLMK 524
|
330
....*....|..
gi 1216866492 305 qlGMTFISVGHR 316
Cdd:COG1132 525 --GRTTIVIAHR 534
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
136-332 |
3.23e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 90.36 E-value: 3.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGsvQMLTDFGP----------HGVLFLPQKPFFTDG 205
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG--QILIDGIDirdisrkslrSMIGVVLQDTFLFSG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQVIYplkevypDSGSADDERILRFLELAGLSNLVAR-TEGLDQQVDWNWyDVLSPGEMQRLSFARLFYLQPKYAVL 284
Cdd:cd03254 92 TIMENIRL-------GRPNATDEEVIEAAKEAGAHDFIMKlPNGYDTVLGENG-GNLSQGERQLLAIARAMLRDPKILIL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1216866492 285 DEATSAL---TEE-VESELYRIGQqlGMTFISVGHRQSLEKFHSLVLKLCGG 332
Cdd:cd03254 164 DEATSNIdteTEKlIQEALEKLMK--GRTSIIIAHRLSTIKNADKILVLDDG 213
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
137-332 |
4.91e-21 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 88.07 E-value: 4.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQmltdFGPHGVLFLPQKPfftdgtLREQVIYplk 216
Cdd:cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL----IDGKDIAKLPLEE------LRRRIGY--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 217 evypdsgsadderilrflelaglsnlvartegLDQqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVE 296
Cdd:cd00267 78 --------------------------------VPQ---------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1216866492 297 SELYRIGQQL---GMTFISVGHRQSL-EKFHSLVLKLCGG 332
Cdd:cd00267 117 ERLLELLRELaeeGRTVIIVTHDPELaELAADRVIVLKDG 156
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
141-289 |
1.17e-20 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 86.93 E-value: 1.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQ-----MLTDFGPH---GVLFLPQKP-FFTDGTLREQV 211
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILldgqdLTDDERKSlrkEIGYVFQDPqLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866492 212 IYPLKEVYPDSgSADDERILRFLELAGLSNLVARTEGldqqvdwNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATS 289
Cdd:pfam00005 81 RLGLLLKGLSK-REKDARAEEALEKLGLGDLADRPVG-------ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
137-318 |
2.19e-19 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 85.37 E-value: 2.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH----GVLFlpQK-PFFTDGTL 207
Cdd:cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIlldgKDITNLPPHkrpvNTVF--QNyALFPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 208 REQVIYPLKeVYPDSGSADDERILRFLELAGLSNLVARTEgldqqvdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLDEA 287
Cdd:cd03300 90 FENIAFGLR-LKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALVNEPKVLLLDEP 157
|
170 180 190
....*....|....*....|....*....|....*
gi 1216866492 288 TSALT----EEVESELYRIGQQLGMTFISVGHRQS 318
Cdd:cd03300 158 LGALDlklrKDMQLELKRLQKELGITFVFVTHDQE 192
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
138-332 |
3.50e-19 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 84.46 E-value: 3.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV------------QMLTDFGPHGVLFLPQK----PF 201
Cdd:cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVrvdgtdisklseKELAAFRRRHIGFVFQSfnllPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 202 FtdgTLREQVIYPLkEVYPDSGSADDERILRFLELAGLSNLvartegLDQQVDWnwydvLSPGEMQRLSFARLFYLQPKY 281
Cdd:cd03255 97 L---TALENVELPL-LLAGVPKKERRERAEELLERVGLGDR------LNHYPSE-----LSGGQQQRVAIARALANDPKI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1216866492 282 AVLDEATSAL----TEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKLCGG 332
Cdd:cd03255 162 ILADEPTGNLdsetGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
137-318 |
8.20e-19 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 83.34 E-value: 8.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH--GVLFLPQKP-FFTDGTLRE 209
Cdd:cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIlidgRDVTGVPPErrNIGMVFQDYaLFPHLTVAE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 210 QVIYPLKEVYPDSGSAdDERILRFLELAGLSNLVARtegldqqvdwnWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATS 289
Cdd:cd03259 92 NIAFGLKLRGVPKAEI-RARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190
....*....|....*....|....*....|...
gi 1216866492 290 AL----TEEVESELYRIGQQLGMTFISVGHRQS 318
Cdd:cd03259 160 ALdaklREELREELKELQRELGITTIYVTHDQE 192
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
141-315 |
1.18e-18 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 83.54 E-value: 1.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGP--HGVLFLPQ-KPFFTDGTLREQVIY 213
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLngkdITNLPPekRDISYVPQnYALFPHMTVYKNIAY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 214 PLKEVYPDSgSADDERILRFLELAGLSNLVARTEGldqqvdwnwydVLSPGEMQRLSFARLFYLQPKYAVLDEATSAL-- 291
Cdd:cd03299 95 GLKKRKVDK-KEIERKVLEIAEMLGIDHLLNRKPE-----------TLSGGEQQRVAIARALVVNPKILLLDEPFSALdv 162
|
170 180
....*....|....*....|....*.
gi 1216866492 292 --TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03299 163 rtKEKLREELKKIRKEFGVTVLHVTH 188
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
137-291 |
1.27e-18 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 82.91 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV--------QMLTDFGPHgVLFLPQKPFFTDG-TL 207
Cdd:COG4133 14 ERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVlwngepirDAREDYRRR-LAYLGHADGLKPElTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 208 REQVIYpLKEVYPDSGSADD-ERILRFLELAGLSNLVARTegldqqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:COG4133 93 RENLRF-WAALYGLRADREAiDEALEAVGLAGLADLPVRQ--------------LSAGQKRRVALARLLLSPAPLWLLDE 157
|
....*
gi 1216866492 287 ATSAL 291
Cdd:COG4133 158 PFTAL 162
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
136-315 |
3.07e-18 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 81.81 E-value: 3.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQML---TDFGPHGVLFLPQKPFF-TD--GTLRE 209
Cdd:cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFgkpLEKERKRIGYVPQRRSIdRDfpISVRD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 210 QV---IYPLKEVYPDSGSADDERILRFLELAGLSNLVARTegLDQqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:cd03235 90 VVlmgLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ--IGE---------LSGGQQQRVLLARALVQDPDLLLLDE 158
|
170 180 190
....*....|....*....|....*....|..
gi 1216866492 287 ATSALTEEVESELYRIGQQL---GMTFISVGH 315
Cdd:cd03235 159 PFAGVDPKTQEDIYELLRELrreGMTILVVTH 190
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
19-299 |
3.13e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 85.49 E-value: 3.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 19 SILSYVVIAIPIFSGvyGDLSPAELSTLVsknaFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGQLRETlldmslksqdc 98
Cdd:TIGR02868 251 AVLGALWAGGPAVAD--GRLAPVTLAVLV----LLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDA----------- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 99 eilgESEWGLDTPPGWPAAEPADTAFLLERVSISAPSsDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTST 178
Cdd:TIGR02868 314 ----AGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPG-APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 179 RGSVqMLTDFGPHG---------VLFLPQKPFFTDGTLREQVIYPLKEvypdsgsADDERILRFLELAGLSNLVART-EG 248
Cdd:TIGR02868 389 QGEV-TLDGVPVSSldqdevrrrVSVCAQDAHLFDTTVRENLRLARPD-------ATDEELWAALERVGLADWLRALpDG 460
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 249 LDQQVDWNWyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESEL 299
Cdd:TIGR02868 461 LDTVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
126-315 |
5.96e-18 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 81.47 E-value: 5.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVS--ISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHGVLFLPQK 199
Cdd:cd03258 4 LKNVSkvFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVlvdgTDLTLLSGKELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 --------PFFTDGTLREQVIYPLkEVYPDSGSADDERILRFLELAGLSNlvaRTEGLDQQvdwnwydvLSPGEMQRLSF 271
Cdd:cd03258 84 igmifqhfNLLSSRTVFENVALPL-EIAGVPKAEIEERVLELLELVGLED---KADAYPAQ--------LSGGQKQRVGI 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1216866492 272 ARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03258 152 ARALANNPKVLLCDEATSALdpetTQSILALLRDINRELGLTIVLITH 199
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
137-315 |
9.06e-18 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 81.07 E-value: 9.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTST-----------RGSVQMLTDFGPH------GVLFlpQK 199
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIpgapdegevllDGKDIYDLDVDVLelrrrvGMVF--QK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 PFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVA-RTEGLDqqvdwnwydvLSPGEMQRLSFARLFYLQ 278
Cdd:cd03260 90 PNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKdRLHALG----------LSGGQQQRLCLARALANE 159
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1216866492 279 PKYAVLDEATSAL----TEEVESELYRIGQQlgMTFISVGH 315
Cdd:cd03260 160 PEVLLLDEPTSALdpisTAKIEELIAELKKE--YTIVIVTH 198
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
126-318 |
9.93e-18 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 81.12 E-value: 9.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPHG----VLFLP 197
Cdd:cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIdghdVRDYTLASlrrqIGLVS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QKPFFTDGTLREQVIYPLKEvypdsgsADDERILRFLELAGLSNLVART-EGLDQQVDWNWYDvLSPGEMQRLSFARLFY 276
Cdd:cd03251 83 QDVFLFNDTVAENIAYGRPG-------ATREEVEEAARAANAHEFIMELpEGYDTVIGERGVK-LSGGQRQRIAIARALL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1216866492 277 LQPKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHRQS 318
Cdd:cd03251 155 KDPPILILDEATSALDTESERLVQAALERLmkNRTTFVIAHRLS 198
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
17-318 |
1.24e-17 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 83.61 E-value: 1.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 17 LGSILSYVVIAIPIFSGVYGDLSPAELSTLvsknafvciylISCFTQLIDLSTTLSDVAGYTHRIGQLRETLldmslksq 96
Cdd:TIGR02203 247 IASLALAVVLFIALFQAQAGSLTAGDFTAF-----------ITAMIALIRPLKSLTNVNAPMQRGLAAAESL-------- 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 97 dCEILgesewglDTPP----GWPAAEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLG 172
Cdd:TIGR02203 308 -FTLL-------DSPPekdtGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 173 GLWTSTRGSVQM---------LTDFGPHgVLFLPQKPFFTDGTLREQViyplkeVYPDSGSADDERILRFLELAGLSNLV 243
Cdd:TIGR02203 380 RFYEPDSGQILLdghdladytLASLRRQ-VALVSQDVVLFNDTIANNI------AYGRTEQADRAEIERALAAAYAQDFV 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 244 ART-EGLDQQVDWNWyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEE----VESELYRIGQqlGMTFISVGHRQS 318
Cdd:TIGR02203 453 DKLpLGLDTPIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNEserlVQAALERLMQ--GRTTLVIAHRLS 529
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
127-316 |
1.30e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 77.53 E-value: 1.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 127 ERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPHgVL-----FLP 197
Cdd:cd03244 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIdgvdISKIGLH-DLrsrisIIP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QKPFFTDGTLREQvIYPLKEvypdsgsADDERILRFLELAGLSNLV-ARTEGLDQQVDWNWyDVLSPGEMQRLSFARLFY 276
Cdd:cd03244 85 QDPVLFSGTIRSN-LDPFGE-------YSDEELWQALERVGLKEFVeSLPGGLDTVVEEGG-ENLSVGQRQLLCLARALL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1216866492 277 LQPKYAVLDEATSAlteeVESELYRIGQQL------GMTFISVGHR 316
Cdd:cd03244 156 RKSKILVLDEATAS----VDPETDALIQKTireafkDCTVLTIAHR 197
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
117-317 |
1.37e-16 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 79.99 E-value: 1.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 117 AEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHg 192
Cdd:PRK09452 6 KQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRImldgQDITHVPAE- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 193 vlflpQKP---------FFTDGTLREQVIYPLK-------EVYPdsgsaddeRILRFLELAGLSNLVARTEgldQQvdwn 256
Cdd:PRK09452 85 -----NRHvntvfqsyaLFPHMTVFENVAFGLRmqktpaaEITP--------RVMEALRMVQLEEFAQRKP---HQ---- 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1216866492 257 wydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALT----EEVESELYRIGQQLGMTFISVGHRQ 317
Cdd:PRK09452 145 ----LSGGQQQRVAIARAVVNKPKVLLLDESLSALDyklrKQMQNELKALQRKLGITFVFVTHDQ 205
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
129-328 |
1.98e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 80.15 E-value: 1.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 129 VSISAPS-SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH----GVLFLPQK 199
Cdd:TIGR00958 484 VSFSYPNrPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVlldgVPLVQYDHHylhrQVALVGQE 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 PFFTDGTLREQVIYPLKevypdsgSADDERILRFLELAGLSNLVAR-TEGLDQQVDWNWyDVLSPGEMQRLSFARLFYLQ 278
Cdd:TIGR00958 564 PVLFSGSVRENIAYGLT-------DTPDEEIMAAAKAANAHDFIMEfPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRK 635
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1216866492 279 PKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRQSL-EKFHS-LVLK 328
Cdd:TIGR00958 636 PRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTvERADQiLVLK 687
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
138-322 |
2.28e-16 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 76.92 E-value: 2.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSvqmltdfgphGVLFLPQKPFFTDGTLREQViyplke 217
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVA----------GCVDVPDNQFGREASLIDAI------ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 218 vyPDSGSADDerILRFLELAGLS---NLVARtegldqqvdwnwYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEE 294
Cdd:COG2401 107 --GRKGDFKD--AVELLNAVGLSdavLWLRR------------FKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQ 170
|
170 180 190
....*....|....*....|....*....|..
gi 1216866492 295 VESELYRIGQQL----GMTFISVGHRQSLEKF 322
Cdd:COG2401 171 TAKRVARNLQKLarraGITLVVATHHYDVIDD 202
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
137-315 |
2.67e-16 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 77.16 E-value: 2.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH---------GVLFlpQKP-FF 202
Cdd:cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIdgedISGLSEAelyrlrrrmGMLF--QSGaLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 TDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSnlvartegldQQVDwnwydvLSPGE----MQ-RLSFARLFYL 277
Cdd:cd03261 90 DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR----------GAED------LYPAElsggMKkRVALARALAL 153
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1216866492 278 QPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03261 154 DPELLLYDEPTAGLdpiaSGVIDDLIRSLKKELGLTSIMVTH 195
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
137-318 |
8.86e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 75.60 E-value: 8.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLI-KDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqmLTDfGPHGVLFLPQkpfftdgTLREQVIYPL 215
Cdd:cd03252 13 DGPVIlDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV--LVD-GHDLALADPA-------WLRRQVGVVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 216 KEVYPDSGSADD-----------ERILRFLELAGLSNLVART-EGLDQQVDWNWYDvLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:cd03252 83 QENVLFNRSIRDnialadpgmsmERVIEAAKLAGAHDFISELpEGYDTIVGEQGAG-LSGGQRQRIAIARALIHNPRILI 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 1216866492 284 LDEATSALTEEVESELYRIGQQL--GMTFISVGHRQS 318
Cdd:cd03252 162 FDEATSALDYESEHAIMRNMHDIcaGRTVIIIAHRLS 198
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
128-315 |
1.46e-15 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 74.85 E-value: 1.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 128 RVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV------------QMLTDFGpHGVLF 195
Cdd:cd03257 8 SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIifdgkdllklsrRLRKIRR-KEIQM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 196 LPQKPF------FTdgtLREQVIYPLKEVYPDSGSAD-DERILRFLELAGLSNLVAR---TEgldqqvdwnwydvLSPGE 265
Cdd:cd03257 87 VFQDPMsslnprMT---IGEQIAEPLRIHGKLSKKEArKEAVLLLLVGVGLPEEVLNrypHE-------------LSGGQ 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1216866492 266 MQRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03257 151 RQRVAIARALALNPKLLIADEPTSALdvsvQAQILDLLKKLQEELGLTLLFITH 204
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
137-317 |
2.00e-15 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 74.21 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH----GVLF-----LPQKpfft 203
Cdd:cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIyiggRDVTDLPPKdrdiAMVFqnyalYPHM---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 204 dgTLREQVIYPLKeVYPDSGSADDERILRFLELAGLSNLvartegLDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:cd03301 88 --TVYDNIAFGLK-LRKVPKDEIDERVREVAELLQIEHL------LDRKP-----KQLSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1216866492 284 LDEATSALT----EEVESELYRIGQQLGMTFISVGHRQ 317
Cdd:cd03301 154 MDEPLSNLDaklrVQMRAELKRLQQRLGTTTIYVTHDQ 191
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
126-315 |
2.44e-15 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 74.05 E-value: 2.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPL--IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH-GVLF--- 195
Cdd:cd03293 3 VRNVSKTYGGGGGAVtaLEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVdgepVTGPGPDrGYVFqqd 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 196 --LPQKpfftdgTLREQVIYPLKEVYPDSGSAdDERILRFLELAGLSNLVARtegldqqvdwnWYDVLSPGEMQRLSFAR 273
Cdd:cd03293 83 alLPWL------TVLDNVALGLELQGVPKAEA-RERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1216866492 274 LFYLQPKYAVLDEATSAL---T-EEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03293 145 ALAVDPDVLLLDEPFSALdalTrEQLQEELLDIWRETGKTVLLVTH 190
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
126-316 |
3.34e-15 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 76.48 E-value: 3.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTST---RGSV----QMLTDFGPHG----VL 194
Cdd:COG1123 7 VRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVlldgRDLLELSEALrgrrIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 195 FLPQKPF--FTDGTLREQVIYPLkEVYPDSGSADDERILRFLELAGLSNLVARtegldqqvdwnWYDVLSPGEMQRLSFA 272
Cdd:COG1123 87 MVFQDPMtqLNPVTVGDQIAEAL-ENLGLSRAEARARVLELLEAVGLERRLDR-----------YPHQLSGGQRQRVAIA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1216866492 273 RLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGHR 316
Cdd:COG1123 155 MALALDPDLLIADEPTTALdvttQAEILDLLRELQRERGTTVLLITHD 202
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
137-318 |
4.50e-15 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 73.42 E-value: 4.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---------LTDFGPH-GVLflPQK-PFFTDg 205
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIdgqdirevtLDSLRRAiGVV--PQDtVLFND- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQVIYplkevypdsG--SADDERILRFLELAGLSNLVAR-TEGLDQQV-DWNWYdvLSPGEMQRLSFARLFYLQPKY 281
Cdd:cd03253 90 TIGYNIRY---------GrpDATDEEVIEAAKAAQIHDKIMRfPDGYDTIVgERGLK--LSGGEKQRVAIARAILKNPPI 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 1216866492 282 AVLDEATSALTEEVESELYRIGQQL--GMTFISVGHRQS 318
Cdd:cd03253 159 LLLDEATSALDTHTEREIQAALRDVskGRTTIVIAHRLS 197
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
121-315 |
4.92e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 74.05 E-value: 4.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 121 DTAFLLERVSISAPssDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHG---- 192
Cdd:PRK10575 9 DTTFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIlldaQPLESWSSKAfark 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 193 VLFLPQKPFFTDG-TLREQVI---YPLKEVYPDSGSADDERILRFLELAGLSNLVARTegldqqvdwnwYDVLSPGEMQR 268
Cdd:PRK10575 87 VAYLPQQLPAAEGmTVRELVAigrYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQR 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 269 LSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALdiahQVDVLALVHRLSQERGLTVIAVLH 206
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
108-312 |
7.42e-15 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 75.32 E-value: 7.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 108 LDTPPGWPAAEPADTAFLLE--RVSIS---APSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV 182
Cdd:COG1123 243 LGAARGRAAPAAAAAEPLLEvrNLSKRypvRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSI 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 183 QM------------LTDFGPHgVLFLPQKP---FFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVArte 247
Cdd:COG1123 323 LFdgkdltklsrrsLRELRRR-VQMVFQDPyssLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDLA--- 398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216866492 248 gldqqvdwNWY-DVLSPGEMQRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMT--FIS 312
Cdd:COG1123 399 --------DRYpHELSGGQRQRVAIARALALEPKLLILDEPTSALdvsvQAQILNLLRDLQRELGLTylFIS 462
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
129-318 |
8.12e-15 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 72.96 E-value: 8.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 129 VSISAPS-SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHGVL----FLPQK 199
Cdd:cd03249 6 VSFRYPSrPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIlldgVDIRDLNLRWLRsqigLVSQE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 PFFTDGTLREQVIYPLKevypdsgSADDERILRFLELAGLSNLVAR-TEGLDQQVDWNwYDVLSPGEMQRLSFARLFYLQ 278
Cdd:cd03249 86 PVLFDGTIAENIRYGKP-------DATDEEVEEAAKKANIHDFIMSlPDGYDTLVGER-GSQLSGGQKQRIAIARALLRN 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1216866492 279 PKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHRQS 318
Cdd:cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAmkGRTTIVIAHRLS 199
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
129-322 |
1.40e-14 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 70.80 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 129 VSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM-------LTDFGPHGVLFLPQKPF 201
Cdd:cd03247 6 VSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLdgvpvsdLEKALSSLISVLNQRPY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 202 FTDGTLREqviyplkevypdsgsadderilrflelaglsNLVARtegldqqvdwnwydvLSPGEMQRLSFARLFYLQPKY 281
Cdd:cd03247 86 LFDTTLRN-------------------------------NLGRR---------------FSGGERQRLALARILLQDAPI 119
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1216866492 282 AVLDEATSALTEEVESELYR-IGQQL-GMTFISVGHR-QSLEKF 322
Cdd:cd03247 120 VLLDEPTVGLDPITERQLLSlIFEVLkDKTLIWITHHlTGIEHM 163
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
126-291 |
2.56e-14 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 70.75 E-value: 2.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKpLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFGPHGVL-----FLPQKP 200
Cdd:cd03226 2 IENISFSYKKGTE-ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERrksigYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 201 ---FFTDgTLREQVIYPLKEvyPDSGSADDERILRFLELAGLsnlvartegldqqVDWNWYDvLSPGEMQRLSFARLFYL 277
Cdd:cd03226 81 dyqLFTD-SVREELLLGLKE--LDAGNEQAETVLKDLDLYAL-------------KERHPLS-LSGGQKQRLAIAAALLS 143
|
170
....*....|....
gi 1216866492 278 QPKYAVLDEATSAL 291
Cdd:cd03226 144 GKDLLIFDEPTSGL 157
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
112-327 |
2.94e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 73.71 E-value: 2.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 112 PGWPAAEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTD 187
Cdd:PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLngqpIAD 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 188 FGP----HGVLFLPQKPFFTDGTLREQviypLKEVYPDsgsADDERILRFLELAGLSNLVARTEGLDQqvdwnWYD---- 259
Cdd:PRK11160 407 YSEaalrQAISVVSQRVHLFSATLRDN----LLLAAPN---ASDEALIEVLQQVGLEKLLEDDKGLNA-----WLGeggr 474
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 260 VLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHR-QSLEKFHSLVL 327
Cdd:PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHaqNKTVLMITHRlTGLEQFDRICV 545
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
137-318 |
3.15e-14 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 72.44 E-value: 3.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQ--SLLitGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH----GVLFlpQK----PFF 202
Cdd:COG3842 17 DVTALDDVSLSIEPGEfvALL--GPSGCGKTTLLRMIAGFETPDSGRIlldgRDVTGLPPEkrnvGMVF--QDyalfPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 tdgTLREQVIYPLKeVYPDSGSADDERILRFLELAGLSNLVAR--TEgldqqvdwnwydvLSPGEMQRLSFARLFYLQPK 280
Cdd:COG3842 93 ---TVAENVAFGLR-MRGVPKAEIRARVAELLELVGLEGLADRypHQ-------------LSGGQQQRVALARALAPEPR 155
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1216866492 281 YAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGHRQS 318
Cdd:COG3842 156 VLLLDEPLSALdaklREEMREELRRLQRELGITFIYVTHDQE 197
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
126-315 |
1.13e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 70.04 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdFGPH-------------G 192
Cdd:PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV---GGMVlseetvwdvrrqvG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 193 VLFlpQKP--FFTDGTLREQVIYPLKevypDSGSADDERILRFLELAglsNLVARTEGLDQQVDwnwydVLSPGEMQRLS 270
Cdd:PRK13635 85 MVF--QNPdnQFVGATVQDDVAFGLE----NIGVPREEMVERVDQAL---RQVGMEDFLNREPH-----RLSGGQKQRVA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1216866492 271 FARLFYLQPKYAVLDEATSALT----EEVESELYRIGQQLGMTFISVGH 315
Cdd:PRK13635 151 IAGVLALQPDIIILDEATSMLDprgrREVLETVRQLKEQKGITVLSITH 199
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
132-327 |
1.29e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 68.65 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 132 SAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgPHGVLFLPQKPFFTDGTLREQV 211
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV-----PGSIAYVSQEPWIQNGTIRENI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 I--YPLkevypdsgsaDDERILRFLELAGLSNLVARTEGLDQQVdwnwydV------LSPGEMQRLSFARLFYLQPKYAV 283
Cdd:cd03250 87 LfgKPF----------DEERYEKVIKACALEPDLEILPDGDLTE------IgekginLSGGQKQRISLARAVYSDADIYL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1216866492 284 LDEATSALTEEVESELYR--IGQQL--GMTFISVGHR-QSLEKFHSLVL 327
Cdd:cd03250 151 LDDPLSAVDAHVGRHIFEncILGLLlnNKTRILVTHQlQLLPHADQIVV 199
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
137-315 |
1.96e-13 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 67.60 E-value: 1.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQML-TDFGPHGVLFLPQKP----FFTDGTLreqv 211
Cdd:cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDgEDLTDLEDELPPLRRrigmVFQDFAL---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 iYPLKEVYpdsgsadderilrflelaglSNLVARtegldqqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSAL 291
Cdd:cd03229 88 -FPHLTVL--------------------ENIALG---------------LSGGQQQRVALARALAMDPDVLLLDEPTSAL 131
|
170 180
....*....|....*....|....*...
gi 1216866492 292 ----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03229 132 dpitRREVRALLKSLQAQLGITVVLVTH 159
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
139-318 |
4.04e-13 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 68.13 E-value: 4.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 139 PLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH--GVLFLPQK-PFFTDGTLREQV 211
Cdd:cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIlfggEDATDVPVQerNVGFVFQHyALFRHMTVFDNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 IYPLKeVYPDSGSAD----DERILRFLELAGLSNLVARtegldqqvdwnWYDVLSPGEMQRLSFARLFYLQPKYAVLDEA 287
Cdd:cd03296 96 AFGLR-VKPRSERPPeaeiRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVALARALAVEPKVLLLDEP 163
|
170 180 190
....*....|....*....|....*....|....*
gi 1216866492 288 TSALTEEVESELY----RIGQQLGMTFISVGHRQS 318
Cdd:cd03296 164 FGALDAKVRKELRrwlrRLHDELHVTTVFVTHDQE 198
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
137-315 |
5.43e-13 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 67.81 E-value: 5.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGS--VQMLTDFGPH----------GVLFlPQKPFFTD 204
Cdd:PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDliVDGLKVNDPKvderlirqeaGMVF-QQFYLFPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GTLREQVIYPLKEVYpDSGSADDERILRflELAGLSNLVARTEGLDQQvdwnwydvLSPGEMQRLSFARLFYLQPKYAVL 284
Cdd:PRK09493 92 LTALENVMFGPLRVR-GASKEEAEKQAR--ELLAKVGLAERAHHYPSE--------LSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190
....*....|....*....|....*....|....
gi 1216866492 285 DEATSALTEEVESELYRIGQQL---GMTFISVGH 315
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLaeeGMTMVIVTH 194
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
139-321 |
1.11e-12 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 69.00 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 139 PLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPHG----VLFLPQKPFFTDGTLREQ 210
Cdd:TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLngfsLKDIDRHTlrqfINYLPQEPYIFSGSILEN 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 211 VIYPLKEvypdsgSADDERILRFLELAGLSNLVAR-TEGLDQQVDWNWYDvLSPGEMQRLSFARLFYLQPKYAVLDEATS 289
Cdd:TIGR01193 568 LLLGAKE------NVSQDEIWAACEIAEIKDDIENmPLGYQTELSEEGSS-ISGGQKQRIALARALLTDSKVLILDESTS 640
|
170 180 190
....*....|....*....|....*....|....*
gi 1216866492 290 ALTEEVESELyrIGQQLGM---TFISVGHRQSLEK 321
Cdd:TIGR01193 641 NLDTITEKKI--VNNLLNLqdkTIIFVAHRLSVAK 673
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
142-315 |
1.11e-12 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 66.16 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 142 KDLSLKIS---EGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----------QMLTDFGPH----GVLFlPQKPFFTD 204
Cdd:cd03297 11 PDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIvlngtvlfdsRKKINLPPQqrkiGLVF-QQYALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GTLREQVIYPLKEVypdSGSADDERILRFLELAGLSNLVARteGLDQqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVL 284
Cdd:cd03297 90 LNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNR--YPAQ---------LSGGEKQRVALARALAAQPELLLL 155
|
170 180 190
....*....|....*....|....*....|....*
gi 1216866492 285 DEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03297 156 DEPFSALdralRLQLLPELKQIKKNLNIPVIFVTH 190
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
129-333 |
1.25e-12 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 67.02 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 129 VSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGL----------------------WTSTRGSVQMLT 186
Cdd:PRK10419 16 GGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLespsqgnvswrgeplaklnraqRKAFRRDIQMVF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 187 DFGPHGVLflPQKpfftdgTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVArtEGLDQQvdwnwydvLSPGEM 266
Cdd:PRK10419 96 QDSISAVN--PRK------TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVL--DKRPPQ--------LSGGQL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216866492 267 QRLSFARLFYLQPKYAVLDEATS----ALTEEVESELYRIGQQLGMTFISVGHRQSL-EKFHSLVLKLCGGG 333
Cdd:PRK10419 158 QRVCLARALAVEPKLLILDEAVSnldlVLQAGVIRLLKKLQQQFGTACLFITHDLRLvERFCQRVMVMDNGQ 229
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
137-315 |
1.38e-12 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 66.54 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH---------GVLF----Lpqk 199
Cdd:COG1127 17 DRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEIlvdgQDITGLSEKelyelrrriGMLFqggaL--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 pfFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNlvARTegldqqvdwnwydvLSPGE----MQ-RLSFARL 274
Cdd:COG1127 94 --FDSLTVFENVAFPLREHTDLSEAEIRELVLEKLELVGLPG--AAD--------------KMPSElsggMRkRVALARA 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1216866492 275 FYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:COG1127 156 LALDPEILLYDEPTAGLdpitSAVIDELIRELRDELGLTSVVVTH 200
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
126-315 |
1.40e-12 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 65.15 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPssDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgphgvlflpqkpfftDG 205
Cdd:cd03214 2 VENLSVGYG--GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-------------------DG 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQviYPLKEVypdsgsAddeRILRF----LELAGLSNLVARTegldqqvdwnwYDVLSPGEMQRLSFARLFYLQPKY 281
Cdd:cd03214 61 KDLAS--LSPKEL------A---RKIAYvpqaLELLGLAHLADRP-----------FNELSGGERQRVLLARALAQEPPI 118
|
170 180 190
....*....|....*....|....*....|....*...
gi 1216866492 282 AVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03214 119 LLLDEPTSHLdiahQIELLELLRRLARERGKTVVMVLH 156
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
125-315 |
2.64e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 65.51 E-value: 2.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 125 LLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHG----VLFL 196
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLlfegEDISTLKPEIyrqqVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 197 PQKPFFTDGTLREQVIYP--LKEVYPdsgsaDDERILRFLELAGLSNlvartEGLDQQVdwnwyDVLSPGEMQRLSFARL 274
Cdd:PRK10247 87 AQTPTLFGDTVYDNLIFPwqIRNQQP-----DPAIFLDDLERFALPD-----TILTKNI-----AELSGGEKQRISLIRN 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1216866492 275 FYLQPKYAVLDEATSALTEE----VESELYRIGQQLGMTFISVGH 315
Cdd:PRK10247 152 LQFMPKVLLLDEITSALDESnkhnVNEIIHRYVREQNIAVLWVTH 196
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
137-315 |
4.91e-12 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 64.47 E-value: 4.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH--------GVLFlPQKPFFTD 204
Cdd:cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIiidgLKLTDDKKNinelrqkvGMVF-QQFNLFPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSnlvarteglDQQvdwNWY-DVLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:cd03262 91 LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA---------DKA---DAYpAQLSGGQQQRVAIARALAMNPKVML 158
|
170 180 190
....*....|....*....|....*....|....*
gi 1216866492 284 LDEATSALTEEVESELYRIGQQL---GMTFISVGH 315
Cdd:cd03262 159 FDEPTSALDPELVGEVLDVMKDLaeeGMTMVVVTH 193
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
134-315 |
9.00e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 64.75 E-value: 9.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 134 PSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLT-----DFGPH-GVLFlpQKP--F 201
Cdd:PRK13650 16 EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIiidgDLLTeenvwDIRHKiGMVF--QNPdnQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 202 FTDGTLREQVIY-------PLKEVypdsgsadDERILRFLELAGLSNLVARTEGLdqqvdwnwydvLSPGEMQRLSFARL 274
Cdd:PRK13650 94 FVGATVEDDVAFglenkgiPHEEM--------KERVNEALELVGMQDFKEREPAR-----------LSGGQKQRVAIAGA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1216866492 275 FYLQPKYAVLDEATSALTEEVESELYR----IGQQLGMTFISVGH 315
Cdd:PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKtikgIRDDYQMTVISITH 199
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
141-330 |
1.42e-11 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 63.61 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH-----GVL--FlpQKP-FFTDGTLR 208
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVlfdgEDITGLPPHeiarlGIGrtF--QIPrLFPELTVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 209 EQVI---------YPLKEVYPDSGSADDERILRFLELAGLSNLVARTEGLdqqvdwnwydvLSPGEMQRLSFARLFYLQP 279
Cdd:cd03219 94 ENVMvaaqartgsGLLLARARREEREARERAEELLERVGLADLADRPAGE-----------LSYGQQRRLEIARALATDP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1216866492 280 KYAVLDEATSALT-EEVESELYRIGQ--QLGMTFISVGHRQslekfhSLVLKLC 330
Cdd:cd03219 163 KLLLLDEPAAGLNpEETEELAELIRElrERGITVLLVEHDM------DVVMSLA 210
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
138-291 |
1.90e-11 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 63.25 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH------GVlfLPQK-----PFf 202
Cdd:PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLngrpLADWSPAelarrrAV--LPQHsslsfPF- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 tdgTLREQV---IYPLkevyPDSGSADDERILRFLELAGLSNLVARTegldqqvdwnwYDVLSPGEMQRLSFAR-LFYL- 277
Cdd:PRK13548 92 ---TVEEVVamgRAPH----GLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARvLAQLw 153
|
170
....*....|....*...
gi 1216866492 278 ----QPKYAVLDEATSAL 291
Cdd:PRK13548 154 epdgPPRWLLLDEPTSAL 171
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
137-318 |
3.09e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 64.46 E-value: 3.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH------GVLflPQKP-FFTDg 205
Cdd:COG5265 370 ERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRIlidgQDIRDVTQAslraaiGIV--PQDTvLFND- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQVIYPLkevyPDsgsADDERILRFLELAGLSNLVART-EGLDQQVdwnwydvLSPGEMQRLSFARLFYLQPKYAVL 284
Cdd:COG5265 447 TIAYNIAYGR----PD---ASEEEVEAAARAAQIHDFIESLpDGYDTRVger-glkLSGGEKQRVAIARTLLKNPPILIF 518
|
170 180 190
....*....|....*....|....*....|....*...
gi 1216866492 285 DEATSAL---TE-EVESELYRIGQqlGMTFISVGHRQS 318
Cdd:COG5265 519 DEATSALdsrTErAIQAALREVAR--GRTTLVIAHRLS 554
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
126-288 |
3.53e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 63.93 E-value: 3.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPssDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgPHG--VLFLPQKPFFT 203
Cdd:COG0488 1 LENLSKSFG--GRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSI-----PKGlrIGYLPQEPPLD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 204 DG-TLREQVIYPLKEVY------------PDSGSADDERIL----RFLELAG----------LSNLVARTEGLDQQVdwn 256
Cdd:COG0488 74 DDlTVLDTVLDGDAELRaleaeleeleakLAEPDEDLERLAelqeEFEALGGweaearaeeiLSGLGFPEEDLDRPV--- 150
|
170 180 190
....*....|....*....|....*....|..
gi 1216866492 257 wyDVLSPGEMQRLSFARLFYLQPKYAVLDEAT 288
Cdd:COG0488 151 --SELSGGWRRRVALARALLSEPDLLLLDEPT 180
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
126-315 |
3.71e-11 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 62.20 E-value: 3.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLiKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV--------------------QML 185
Cdd:cd03256 3 VENLSKTYPNGKKAL-KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVlidgtdinklkgkalrqlrrQIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 186 TDFGPHG----------VL--FLPQKPFFtdgtlreQVIYPLkevYPDsgsADDERILRFLELAGLSNLV-ARTegldqq 252
Cdd:cd03256 82 MIFQQFNlierlsvlenVLsgRLGRRSTW-------RSLFGL---FPK---EEKQRALAALERVGLLDKAyQRA------ 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1216866492 253 vdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:cd03256 143 ------DQLSGGQQQRVAIARALMQQPKLILADEPVASLdpasSRQVMDLLKRINREEGITVIVSLH 203
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
140-297 |
4.10e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 64.20 E-value: 4.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 140 LIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPHGVLF----LPQKPFFTDGTLREQv 211
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIdglnIAKIGLHDLRFkitiIPQDPVLFSGSLRMN- 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 IYPLkevypdsGSADDERILRFLELAGLSNLV-ARTEGLDQQVDWNWYDvLSPGEMQRLSFARLFYLQPKYAVLDEATSA 290
Cdd:TIGR00957 1380 LDPF-------SQYSDEEVWWALELAHLKTFVsALPDKLDHECAEGGEN-LSVGQRQLVCLARALLRKTKILVLDEATAA 1451
|
....*..
gi 1216866492 291 LTEEVES 297
Cdd:TIGR00957 1452 VDLETDN 1458
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
143-317 |
6.21e-11 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 62.79 E-value: 6.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 143 DLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgpHG------------VLFLPQK-PFFTDGTLRE 209
Cdd:PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF------HGtdvsrlhardrkVGFVFQHyALFRHMTVFD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 210 QVIYPLKeVYP----DSGSADDERILRFLELAGLSNLVARtegldqqvdwnWYDVLSPGEMQRLSFARLFYLQPKYAVLD 285
Cdd:PRK10851 94 NIAFGLT-VLPrrerPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVALARALAVEPQILLLD 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 1216866492 286 EATSALTEEVESELYR----IGQQLGMTFISVGHRQ 317
Cdd:PRK10851 162 EPFGALDAQVRKELRRwlrqLHEELKFTSVFVTHDQ 197
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
139-300 |
1.50e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 62.62 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 139 PLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQmltdfgpHG--VLFLPQKPFFTDGTLREQVIYPLk 216
Cdd:TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK-------HSgrISFSPQTSWIMPGTIKDNIIFGL- 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 217 evypdsgSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVE 296
Cdd:TIGR01271 512 -------SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584
|
....
gi 1216866492 297 SELY 300
Cdd:TIGR01271 585 KEIF 588
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
132-315 |
1.63e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 60.90 E-value: 1.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 132 SAPSSDKPLIkDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQ----MLTDFGPH----------GVLF-L 196
Cdd:PRK13643 14 NSPFASRALF-DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTvgdiVVSSTSKQkeikpvrkkvGVVFqF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 197 PQKPFFTDGTLREQVIYPlkEVYPDSGSADDERILRFLELAGLSNLVARTEGLDqqvdwnwydvLSPGEMQRLSFARLFY 276
Cdd:PRK13643 93 PESQLFEETVLKDVAFGP--QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE----------LSGGQMRRVAIAGILA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1216866492 277 LQPKYAVLDEATSALTEEVESELYRIGQ---QLGMTFISVGH 315
Cdd:PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFEsihQSGQTVVLVTH 202
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
127-326 |
1.70e-10 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 60.18 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 127 ERVSISAPS-SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGsvQMLTDFGP---------HGVLFL 196
Cdd:cd03248 15 QNVTFAYPTrPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG--QVLLDGKPisqyehkylHSKVSL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 197 -PQKPFFTDGTLREQVIYPLkevypdsGSADDERILRFLELAGLSNLVARTE-GLDQQVDWNWyDVLSPGEMQRLSFARL 274
Cdd:cd03248 93 vGQEPVLFARSLQDNIAYGL-------QSCSFECVKEAAQKAHAHSFISELAsGYDTEVGEKG-SQLSGGQKQRVAIARA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866492 275 FYLQPKYAVLDEATSALteEVESELyRIGQQL-----GMTFISVGHR-QSLEKFHSLV 326
Cdd:cd03248 165 LIRNPQVLILDEATSAL--DAESEQ-QVQQALydwpeRRTVLVIAHRlSTVERADQIL 219
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
115-315 |
2.24e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 60.08 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 115 PAAEPADTAFLLERVSISapSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGsvQMLTDFGPHGVL 194
Cdd:PRK11247 4 TARLNQGTPLLLNAVSKR--YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG--ELLAGTAPLAEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 195 FLPQKPFFTDGTLreqviYPLKEVYPDSG---SAD-DERILRFLELAGLSNLVArtegldqqvdwNWYDVLSPGEMQRLS 270
Cdd:PRK11247 80 REDTRLMFQDARL-----LPWKKVIDNVGlglKGQwRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVA 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1216866492 271 FARLFYLQPKYAVLDE---ATSALTE-EVESELYRIGQQLGMTFISVGH 315
Cdd:PRK11247 144 LARALIHRPGLLLLDEplgALDALTRiEMQDLIESLWQQHGFTVLLVTH 192
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
22-300 |
2.31e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.92 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 22 SYVVIAIPIFS-----GVY----GDLSPAElstlvsknAFVCIYLISCF-TQLIDLSTTLSDVAGYTHRIGQLRETLLdm 91
Cdd:PLN03232 527 SFILNSIPVVVtlvsfGVFvllgGDLTPAR--------AFTSLSLFAVLrSPLNMLPNLLSQVVNANVSLQRIEELLL-- 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 92 slksQDCEILGESewgldtppgwPAAEPADTAFLLERVSISAPS-SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLR- 169
Cdd:PLN03232 597 ----SEERILAQN----------PPLQPGAPAISIKNGYFSWDSkTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISa 662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 170 VLGGLWTSTRGSVQMLTDfgphgVLFLPQKPFFTDGTLREQVIYplkevypdsGSA-DDERILRFLELAGLS---NLVA- 244
Cdd:PLN03232 663 MLGELSHAETSSVVIRGS-----VAYVPQVSWIFNATVRENILF---------GSDfESERYWRAIDVTALQhdlDLLPg 728
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866492 245 --RTEGLDQQVDwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELY 300
Cdd:PLN03232 729 rdLTEIGERGVN------ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
140-315 |
2.49e-10 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 59.98 E-value: 2.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 140 LIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV-------QMLTD-------FGPHGVLFLPQK------ 199
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIvvngqtiNLVRDkdgqlkvADKNQLRLLRTRltmvfq 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 --PFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLsnlvarteglDQQVDWNWYDVLSPGEMQRLSFARLFYL 277
Cdd:PRK10619 100 hfNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI----------DERAQGKYPVHLSGGQQQRVSIARALAM 169
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1216866492 278 QPKYAVLDEATSALTEEVESELYRIGQQL---GMTFISVGH 315
Cdd:PRK10619 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLaeeGKTMVVVTH 210
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
111-316 |
4.08e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.15 E-value: 4.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 111 PPGWPAAepadTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LT 186
Cdd:PLN03232 1226 VSGWPSR----GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIddcdVA 1301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 187 DFGPHGVL----FLPQKPFFTDGTLREQvIYPLKEvypdsgsADDERILRFLELAGLSNLVARTE-GLDQQVdWNWYDVL 261
Cdd:PLN03232 1302 KFGLTDLRrvlsIIPQSPVLFSGTVRFN-IDPFSE-------HNDADLWEALERAHIKDVIDRNPfGLDAEV-SEGGENF 1372
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1216866492 262 SPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYR-IGQQL-GMTFISVGHR 316
Cdd:PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRtIREEFkSCTMLVIAHR 1429
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
139-300 |
7.98e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 59.10 E-value: 7.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 139 PLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQmltdfgpHG--VLFLPQKPFFTDGTLREQVIYPLk 216
Cdd:cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK-------HSgrISFSSQFSWIMPGTIKENIIFGV- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 217 evypdsgSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVE 296
Cdd:cd03291 123 -------SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 195
|
....
gi 1216866492 297 SELY 300
Cdd:cd03291 196 KEIF 199
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
141-315 |
9.42e-10 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 59.28 E-value: 9.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGsvQMLTDfgphGVLFLPqkpfFTDGTLRE------QVIYP 214
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG--QVLID----GVDIAK----ISDAELREvrrkkiAMVFQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 215 LKEVYPDSGSADDERIlrFLELAGLSNLVARTEGLD--QQVDWNWY-----DVLSPGEMQRLSFARLFYLQPKYAVLDEA 287
Cdd:PRK10070 114 SFALMPHMTVLDNTAF--GMELAGINAEERREKALDalRQVGLENYahsypDELSGGMRQRVGLARALAINPDILLMDEA 191
|
170 180 190
....*....|....*....|....*....|..
gi 1216866492 288 TSALT----EEVESELYRIGQQLGMTFISVGH 315
Cdd:PRK10070 192 FSALDplirTEMQDELVKLQAKHQRTIVFISH 223
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
141-309 |
1.13e-09 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 57.83 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH-----GVLFLPQ-KPFFTDGTLREQ 210
Cdd:cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFdgrdITGLPPHeraraGIGYVPEgRRIFPELTVEEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 211 VIYPLKEVYPDSGSADDERIL-RFLELAglsnlvartEGLDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLDEATS 289
Cdd:cd03224 96 LLLGAYARRRAKRKARLERVYeLFPRLK---------ERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161
|
170 180
....*....|....*....|...
gi 1216866492 290 ALTEEVESELYRIGQQL---GMT 309
Cdd:cd03224 162 GLAPKIVEEIFEAIRELrdeGVT 184
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
126-291 |
1.55e-09 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 57.28 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKP--LIKDLSLKISEGQSLLITGNTGTGKTSLL-----RVLGGlwTSTRGSV----------QMLTDF 188
Cdd:cd03234 6 WWDVGLKAKNWNKYarILNDVSLHVESGQVMAILGSSGSGKTTLLdaisgRVEGG--GTTSGQIlfngqprkpdQFQKCV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 189 GphgvlFLPQKPFFTDG-TLREQVIY--PLKEVYPDSGSADDER--ILRFLELAglsnlvarteglDQQVDWNWYDVLSP 263
Cdd:cd03234 84 A-----YVRQDDILLPGlTVRETLTYtaILRLPRKSSDAIRKKRveDVLLRDLA------------LTRIGGNLVKGISG 146
|
170 180
....*....|....*....|....*...
gi 1216866492 264 GEMQRLSFARLFYLQPKYAVLDEATSAL 291
Cdd:cd03234 147 GERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
115-317 |
1.71e-09 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 58.69 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 115 PAAEPADTAF-LLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFG 189
Cdd:PRK11607 8 PQAKTRKALTpLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQImldgVDLSHVP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 190 PHgvlflpQKP---------FFTDGTLREQVIYPLKEVYPDSGSADDeRILRFLELAGLSNLVARTEgldQQvdwnwydv 260
Cdd:PRK11607 88 PY------QRPinmmfqsyaLFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEMLGLVHMQEFAKRKP---HQ-------- 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 261 LSPGEMQRLSFARLFYLQPKYAVLDEATSALT----EEVESELYRIGQQLGMTFISVGHRQ 317
Cdd:PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDkklrDRMQLEVVDILERVGVTCVMVTHDQ 210
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
111-299 |
1.75e-09 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 58.82 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 111 PPGwpAAEPADTAFLLE--RVSISAPSSdKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---- 184
Cdd:PRK13657 322 PPG--AIDLGRVKGAVEfdDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIdgtd 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 185 LTDFGPH------GVLFlpQKPFFTDGTLREQviypLKEVYPDsgsADDERILRFLELAGLSNLVARTE-GLDQQVDWNW 257
Cdd:PRK13657 399 IRTVTRAslrrniAVVF--QDAGLFNRSIEDN----IRVGRPD---ATDEEMRAAAERAQAHDFIERKPdGYDTVVGERG 469
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1216866492 258 yDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESEL 299
Cdd:PRK13657 470 -RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
141-313 |
2.08e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 57.49 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqMLTD----FGPHGVLFLPQKPFFTDGTLR---EQVI- 212
Cdd:PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDhplhFGDYSYRSQRIRMIFQDPSTSlnpRQRIs 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 213 ----YPLKEVYPDSGSADDERILRFLELAGLSNLVArtegldqqvdwNWY-DVLSPGEMQRLSFARLFYLQPKYAVLDEA 287
Cdd:PRK15112 108 qildFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----------SYYpHMLAPGQKQRLGLARALILRPKVIIADEA 176
|
170 180 190
....*....|....*....|....*....|
gi 1216866492 288 TSALTEEVESELYRIGQQL----GMTFISV 313
Cdd:PRK15112 177 LASLDMSMRSQLINLMLELqekqGISYIYV 206
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
121-315 |
2.56e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 57.31 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 121 DTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgphgvlflpqkp 200
Cdd:PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI---------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 201 fftDGTL--REQVIYPLKEV-----YPDS---GSADDERIlRFlelaGLSN-LVARTE------GLDQQVDWNWY----- 258
Cdd:PRK13632 69 ---DGITisKENLKEIRKKIgiifqNPDNqfiGATVEDDI-AF----GLENkKVPPKKmkdiidDLAKKVGMEDYldkep 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 259 DVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQL----GMTFISVGH 315
Cdd:PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLrktrKKTLISITH 201
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
137-291 |
2.56e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 58.32 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGlWTSTRGSVQM----LTDFGP----HGVLFLPQKPFFTDGTLR 208
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKIngieLRELDPeswrKHLSWVGQNPQLPHGTLR 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 209 EQVIyplkevyPDSGSADDERILRFLELAGLSNLVAR-TEGLDQQV-DWNwyDVLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:PRK11174 441 DNVL-------LGNPDASDEQLQQALENAWVSEFLPLlPQGLDTPIgDQA--AGLSVGQAQRLALARALLQPCQLLLLDE 511
|
....*
gi 1216866492 287 ATSAL 291
Cdd:PRK11174 512 PTASL 516
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
141-315 |
3.00e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 57.34 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQ----MLT------DFGPH----GVLF-LPQKPFFTDG 205
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTigerVITagkknkKLKPLrkkvGIVFqFPEHQLFEET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQVIYPLkevypDSGSADDERILR---FLELAGLS-NLVARTEgldqqvdwnwYDvLSPGEMQRLSFARLFYLQPKY 281
Cdd:PRK13634 103 VEKDICFGPM-----NFGVSEEDAKQKareMIELVGLPeELLARSP----------FE-LSGGQMRRVAIAGVLAMEPEV 166
|
170 180 190
....*....|....*....|....*....|....*...
gi 1216866492 282 AVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:PRK13634 167 LVLDEPTAGLdpkgRKEMMEMFYKLHKEKGLTTVLVTH 204
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
143-315 |
3.34e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 57.06 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 143 DLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH----------GVLF-LPQKPFFTDGTL 207
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVrvddTLITSTSKNkdikqirkkvGLVFqFPESQLFEETVL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 208 REQVIYPlkEVYPDSGSADDERILRFLELAGLSnlvarteglDQQVDWNWYDvLSPGEMQRLSFARLFYLQPKYAVLDEA 287
Cdd:PRK13649 105 KDVAFGP--QNFGVSQEEAEALAREKLALVGIS---------ESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEP 172
|
170 180 190
....*....|....*....|....*....|.
gi 1216866492 288 TSALTEEVESELYRIGQQL---GMTFISVGH 315
Cdd:PRK13649 173 TAGLDPKGRKELMTLFKKLhqsGMTIVLVTH 203
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
137-291 |
3.37e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 56.04 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQmLTDFGPHGVLFLPQ----------KPFFtdgT 206
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-LDGGDIDDPDVAEAchylghrnamKPAL---T 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 207 LREQVIYpLKEVYpDSGSADDERILRFLELAGLSNLVARtegldqqvdwnwydVLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:PRK13539 90 VAENLEF-WAAFL-GGEELDIAAALEAVGLAPLAHLPFG--------------YLSAGQKRRVALARLLVSNRPIWILDE 153
|
....*
gi 1216866492 287 ATSAL 291
Cdd:PRK13539 154 PTAAL 158
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
111-290 |
3.39e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 58.21 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 111 PPGWPAAepadTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM------ 184
Cdd:PLN03130 1229 PPGWPSS----GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIdgcdis 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 185 ---LTDFgpHGVL-FLPQKPFFTDGTLREQvIYPLKEvypdsgsADDERILRFLELAGLSNLVAR-TEGLDQQVDwNWYD 259
Cdd:PLN03130 1305 kfgLMDL--RKVLgIIPQAPVLFSGTVRFN-LDPFNE-------HNDADLWESLERAHLKDVIRRnSLGLDAEVS-EAGE 1373
|
170 180 190
....*....|....*....|....*....|.
gi 1216866492 260 VLSPGEMQRLSFARLFYLQPKYAVLDEATSA 290
Cdd:PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAA 1404
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
119-316 |
3.71e-09 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 55.88 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 119 PADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---------LTDFg 189
Cdd:cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIdgidistipLEDL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 190 PHGVLFLPQKPFFTDGTLREQViyplkEVYpdsGSADDERILRFLELA-GLSNlvartegldqqvdwnwydvLSPGEMQR 268
Cdd:cd03369 81 RSSLTIIPQDPTLFSGTIRSNL-----DPF---DEYSDEEIYGALRVSeGGLN-------------------LSQGQRQL 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1216866492 269 LSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQL--GMTFISVGHR 316
Cdd:cd03369 134 LCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEftNSTILTIAHR 183
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
119-315 |
5.31e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 56.35 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 119 PADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLwtstrgsvqMLTDFGPHGVLFLpq 198
Cdd:PRK13640 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL---------LLPDDNPNSKITV-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 199 kpfftDG-TLREQVIYPLKE----VY--PDS---GSADDERILRFLELAGLS---------NLVARTEGLDQQVDWNWYd 259
Cdd:PRK13640 70 -----DGiTLTAKTVWDIREkvgiVFqnPDNqfvGATVGDDVAFGLENRAVPrpemikivrDVLADVGMLDYIDSEPAN- 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 260 vLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQL----GMTFISVGH 315
Cdd:PRK13640 144 -LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLkkknNLTVISITH 202
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
141-317 |
5.55e-09 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 56.62 E-value: 5.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH--GVLFLPQK----PFFtdgTLREQ 210
Cdd:COG3839 19 LKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEIliggRDVTDLPPKdrNIAMVFQSyalyPHM---TVYEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 211 VIYPLK-------EVypdsgsadDERILRFLELAGLSNLVAR--TEgldqqvdwnwydvLSPGEMQRLSFARLFYLQPKY 281
Cdd:COG3839 96 IAFPLKlrkvpkaEI--------DRRVREAAELLGLEDLLDRkpKQ-------------LSGGQRQRVALGRALVREPKV 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1216866492 282 AVLDEATS----ALTEEVESELYRIGQQLGMTFISVGHRQ 317
Cdd:COG3839 155 FLLDEPLSnldaKLRVEMRAEIKRLHRRLGTTTIYVTHDQ 194
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
126-291 |
7.35e-09 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 55.06 E-value: 7.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM-------LTDFGPHGVLFLPQ 198
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWngtplaeQRDEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 199 KPFF-TDGTLREQviypLKEVYPDSGSADD--ERILRFLELAGLSNLVARTegldqqvdwnwydvLSPGEMQRLSFARLF 275
Cdd:TIGR01189 81 LPGLkPELSALEN----LHFWAAIHGGAQRtiEDALAAVGLTGFEDLPAAQ--------------LSAGQQRRLALARLW 142
|
170
....*....|....*.
gi 1216866492 276 YLQPKYAVLDEATSAL 291
Cdd:TIGR01189 143 LSRRPLWILDEPTTAL 158
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
126-309 |
7.71e-09 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 56.24 E-value: 7.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLI--KDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH-------- 191
Cdd:COG1135 4 LENLSKTFPTKGGPVTalDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVlvdgVDLTALSERelraarrk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 192 -GVLF-----LPQKpfftdgTLREQVIYPLK--EVypdSGSADDERILRFLELAGLSNLVARtegldqqvdwnwY-DVLS 262
Cdd:COG1135 84 iGMIFqhfnlLSSR------TVAENVALPLEiaGV---PKAEIRKRVAELLELVGLSDKADA------------YpSQLS 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1216866492 263 PGEMQRLSFARLFYLQPKyaVL--DEATSAL----TEEVESELYRIGQQLGMT 309
Cdd:COG1135 143 GGQKQRVGIARALANNPK--VLlcDEATSALdpetTRSILDLLKDINRELGLT 193
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
137-317 |
8.71e-09 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 56.19 E-value: 8.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGP--HGVLFLPQKpfftdgtlreq 210
Cdd:PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLfigeKRMNDVPPaeRGVGMVFQS----------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 211 viYPLkevYPDSGSADDeriLRF-LELAGLS--------NLVARTEGLDQQVDWNWYDvLSPGEMQRLSFARLFYLQPKY 281
Cdd:PRK11000 84 --YAL---YPHLSVAEN---MSFgLKLAGAKkeeinqrvNQVAEVLQLAHLLDRKPKA-LSGGQRQRVAIGRTLVAEPSV 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1216866492 282 AVLDEATS----ALTEEVESELYRIGQQLGMTFISVGHRQ 317
Cdd:PRK11000 155 FLLDEPLSnldaALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
116-317 |
1.05e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 55.44 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 116 AAEPADTAFLLERVSISApsSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---LTDFGPH- 191
Cdd:PRK14246 3 AGKSAEDVFNISRLYLYI--NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVdgkVLYFGKDi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 192 ------------GVLFLPQKPFfTDGTLREQVIYPLKEvypdSGSADDERILRFLELAglsnlvARTEGLDQQVdwnwYD 259
Cdd:PRK14246 81 fqidaiklrkevGMVFQQPNPF-PHLSIYDNIAYPLKS----HGIKEKREIKKIVEEC------LRKVGLWKEV----YD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866492 260 -------VLSPGEMQRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGHRQ 317
Cdd:PRK14246 146 rlnspasQLSGGQQQRLTIARALALKPKVLLMDEPTSMIdivnSQAIEKLITELKNEIAIVIVSHNPQQ 214
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
137-291 |
1.11e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 54.42 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV---------------QMLTDFGPH-GVlflpqKP 200
Cdd:PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVlwqgepirrqrdeyhQDLLYLGHQpGI-----KT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 201 fftDGTLREQviypLKEVYPDSGSADDERILRFLE---LAGLSNLVARTegldqqvdwnwydvLSPGEMQRLSFARLFYL 277
Cdd:PRK13538 88 ---ELTALEN----LRFYQRLHGPGDDEALWEALAqvgLAGFEDVPVRQ--------------LSAGQQRRVALARLWLT 146
|
170
....*....|....
gi 1216866492 278 QPKYAVLDEATSAL 291
Cdd:PRK13538 147 RAPLWILDEPFTAI 160
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
140-291 |
2.11e-08 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 53.65 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 140 LIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM-------LTDFGPHGVLFLPQKPFFTdGTLreQVI 212
Cdd:cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLnggpldfQRDSIARGLLYLGHAPGIK-TTL--SVL 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866492 213 YPLKEVYPDSGSADDERILRFLELAGLSNLVARTegldqqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSAL 291
Cdd:cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQ--------------LSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
137-316 |
2.56e-08 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 53.44 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPHGVLFLPQ-KPFFTDGTLREQV 211
Cdd:cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFdgkpLDIAARNRIGYLPEeRGLYPKMKVIDQL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 IYpLKEVYPDSGSADDERILRFLELAGLSNLvaRTEGLDQqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSAL 291
Cdd:cd03269 92 VY-LAQLKGLKKEEARRRIDEWLERLELSEY--ANKRVEE---------LSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159
|
170 180
....*....|....*....|....*....
gi 1216866492 292 ----TEEVESELYRIGQQlGMTFISVGHR 316
Cdd:cd03269 160 dpvnVELLKDVIRELARA-GKTVILSTHQ 187
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
143-319 |
4.80e-08 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 52.80 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 143 DLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHGVLFLPQK--------PFFTDGTLREQ 210
Cdd:cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIrvngQDVSDLRGRAIPYLRRKigvvfqdfRLLPDRNVYEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 211 VIYPLkEVYPDSGSADDERILRFLELAGLSNlvaRTEGLDQQvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSA 290
Cdd:cd03292 99 VAFAL-EVTGVPPREIRKRVPAALELVGLSH---KHRALPAE--------LSGGEQQRVAIARAIVNSPTILIADEPTGN 166
|
170 180 190
....*....|....*....|....*....|..
gi 1216866492 291 LTEEVESELYRIGQQL---GMTFISVGHRQSL 319
Cdd:cd03292 167 LDPDTTWEIMNLLKKInkaGTTVVVATHAKEL 198
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
129-321 |
5.08e-08 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 54.25 E-value: 5.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 129 VSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---------LTDFGPHGVLFLPQK 199
Cdd:PRK11176 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLdghdlrdytLASLRNQVALVSQNV 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 200 PFFTDgTLREQVIYPLKEVYpdsgsaDDERILRFLELAGLSNLVARTE-GLDQQVDWNWYdVLSPGEMQRLSFARLFYLQ 278
Cdd:PRK11176 427 HLFND-TIANNIAYARTEQY------SREQIEEAARMAYAMDFINKMDnGLDTVIGENGV-LLSGGQRQRIAIARALLRD 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1216866492 279 PKYAVLDEATSALteEVESElyRIGQ------QLGMTFISVGHRQS-LEK 321
Cdd:PRK11176 499 SPILILDEATSAL--DTESE--RAIQaaldelQKNRTSLVIAHRLStIEK 544
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
141-322 |
7.27e-08 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 53.57 E-value: 7.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGsvQMLTD-----------------FGPHGVlflpqkpfFT 203
Cdd:PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG--QIFIDgedvthrsiqqrdicmvFQSYAL--------FP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 204 DGTLREQVIYPLKEVypdsGSADDERILRFLELAGLSNLvartEGLDQQvdwnWYDVLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:PRK11432 92 HMSLGENVGYGLKML----GVPKEERKQRVKEALELVDL----AGFEDR----YVDQISGGQQQRVALARALILKPKVLL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1216866492 284 LDEATSALteevESELYR--------IGQQLGMTFISVGHRQSlEKF 322
Cdd:PRK11432 160 FDEPLSNL----DANLRRsmrekireLQQQFNITSLYVTHDQS-EAF 201
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
137-315 |
1.04e-07 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 52.32 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGP----HGVLFLPQKPFFTDG-TL 207
Cdd:PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVflgdKPISMLSSrqlaRRLALLPQHHLTPEGiTV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 208 REQVIY---PLKEVYPDSGSADDERILRFLELAGLSNLVarteglDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAVL 284
Cdd:PRK11231 94 RELVAYgrsPWLSLWGRLSAEDNARVNQAMEQTRINHLA------DRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLL 162
|
170 180 190
....*....|....*....|....*....|....
gi 1216866492 285 DEATSALTEEVESELYRIGQQL---GMTFISVGH 315
Cdd:PRK11231 163 DEPTTYLDINHQVELMRLMRELntqGKTVVTVLH 196
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
137-318 |
1.34e-07 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 53.04 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLI-KDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqmltdfgphgvlflpqkpfFTDG---------T 206
Cdd:TIGR03797 464 DGPLIlDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-------------------FYDGqdlagldvqA 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 207 LREQVIYPLKEVYPDSGSadderILRflELAGLSNL-------VARTEGLDQQVD---WNWYDV-------LSPGEMQRL 269
Cdd:TIGR03797 525 VRRQLGVVLQNGRLMSGS-----IFE--NIAGGAPLtldeaweAARMAGLAEDIRampMGMHTVisegggtLSGGQRQRL 597
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1216866492 270 SFARLFYLQPKYAVLDEATSAL---TEEVESELYrigQQLGMTFISVGHRQS 318
Cdd:TIGR03797 598 LIARALVRKPRILLFDEATSALdnrTQAIVSESL---ERLKVTRIVIAHRLS 646
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
136-332 |
1.67e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 53.03 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltdfgPHGVLFLPQKPFFTDGTLREQVIY-- 213
Cdd:TIGR00957 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM-----KGSVAYVPQQAWIQNDSLRENILFgk 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 214 PLKEVYPDSgSADDERILRFLELAGLSNlvaRTEGLDQQVDwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALTE 293
Cdd:TIGR00957 724 ALNEKYYQQ-VLEACALLPDLEILPSGD---RTEIGEKGVN------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1216866492 294 EVESELYR-----IGQQLGMTFISVGHRQSLEKFHSLVLKLCGG 332
Cdd:TIGR00957 794 HVGKHIFEhvigpEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
125-299 |
1.90e-07 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 51.62 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 125 LLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM--LTDFGP---HGVLF---- 195
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLdgKPVEGPgaeRGVVFqneg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 196 -LPQKpfftdgTLREQVIYPLKEvypdSGSADDERILRFLELAGLSNLvartEGLDQQVDWNwydvLSPGEMQRLSFARL 274
Cdd:PRK11248 81 lLPWR------NVQDNVAFGLQL----AGVEKMQRLEIAHQMLKKVGL----EGAEKRYIWQ----LSGGQRQRVGIARA 142
|
170 180
....*....|....*....|....*...
gi 1216866492 275 FYLQPKYAVLDE---ATSALTEEVESEL 299
Cdd:PRK11248 143 LAANPQLLLLDEpfgALDAFTREQMQTL 170
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
136-327 |
2.10e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 51.68 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPL-IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV---------QMLTDFGPH-GVLFlpQKPfftd 204
Cdd:PRK13648 19 SDASFtLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIfynnqaitdDNFEKLRKHiGIVF--QNP---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 gtlREQVIyplkevypdsGSadderILRFLELAGLSNLVARTEGLDQQVDWNWYDV------------LSPGEMQRLSFA 272
Cdd:PRK13648 93 ---DNQFV----------GS-----IVKYDVAFGLENHAVPYDEMHRRVSEALKQVdmleradyepnaLSGGQKQRVAIA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 273 RLFYLQPKYAVLDEATSALTEEVESELYRIGQQL----GMTFISVGH--RQSLEKFHSLVL 327
Cdd:PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVksehNITIISITHdlSEAMEADHVIVM 215
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
2-300 |
2.70e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.43 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 2 RSLLLSTvgINTFdYLGSILSYV-VIAIPIFSGVYGDLSPAELSTLVSKNA---FVCIYLISCFTQLIDLSTTLSdvagy 77
Cdd:PLN03130 518 KAQLLSA--FNSF-ILNSIPVLVtVVSFGVFTLLGGDLTPARAFTSLSLFAvlrFPLFMLPNLITQAVNANVSLK----- 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 78 thrigQLRETLldmslksqdceiLGESEWGLDTPP---GWPAAEPADTAFLLErvsisaPSSDKPLIKDLSLKISEGQSL 154
Cdd:PLN03130 590 -----RLEELL------------LAEERVLLPNPPlepGLPAISIKNGYFSWD------SKAERPTLSNINLDVPVGSLV 646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 155 LITGNTGTGKTSLLR-VLGGLWTSTRGSVQMLTDfgphgVLFLPQKPFFTDGTLREQVIYplkevypdsGSA-DDERILR 232
Cdd:PLN03130 647 AIVGSTGEGKTSLISaMLGELPPRSDASVVIRGT-----VAYVPQVSWIFNATVRDNILF---------GSPfDPERYER 712
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1216866492 233 FLELAGLSNLVARTEGLDQQ------VDwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELY 300
Cdd:PLN03130 713 AIDVTALQHDLDLLPGGDLTeigergVN------ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
135-291 |
3.49e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 52.22 E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 135 SSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLwTSTRG----------SVQMLTDFGPHGVlfLPQKPFFTD 204
Cdd:TIGR01271 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGeiqidgvswnSVTLQTWRKAFGV--IPQKVFIFS 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GTLReqviyplKEVYPDSGSADDErILRFLELAGLSNLVARTEG-LDQQVDWNWYdVLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:TIGR01271 1306 GTFR-------KNLDPYEQWSDEE-IWKVAEEVGLKSVIEQFPDkLDFVLVDGGY-VLSNGHKQLMCLARSILSKAKILL 1376
|
....*...
gi 1216866492 284 LDEATSAL 291
Cdd:TIGR01271 1377 LDEPSAHL 1384
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
122-315 |
4.13e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 51.65 E-value: 4.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 122 TAFL-LERVSISAPSSDKPL--IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHGVL 194
Cdd:PRK10535 2 TALLeLKDIRRSYPSGEEQVevLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYrvagQDVATLDADALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 195 FLPQKPF---------FTDGTLREQVIYPlkEVYpdSGSADDERILRFLELagLSNLvarteGLDQQVDWNwYDVLSPGE 265
Cdd:PRK10535 82 QLRREHFgfifqryhlLSHLTAAQNVEVP--AVY--AGLERKQRLLRAQEL--LQRL-----GLEDRVEYQ-PSQLSGGQ 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1216866492 266 MQRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQlGMTFISVGH 315
Cdd:PRK10535 150 QQRVSIARALMNGGQVILADEPTGALdshsGEEVMAILHQLRDR-GHTVIIVTH 202
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
115-318 |
4.16e-07 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 51.64 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 115 PAAEPADTAFLLER----VSISA---PSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----Q 183
Cdd:PRK10789 298 PVVKDGSEPVPEGRgeldVNIRQftyPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIrfhdI 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 184 MLTDFGPHG----VLFLPQKPF-FTDgtlreQVIYPLKEVYPDSGSADDERILRfleLAGLSNLVAR-TEGLDQQVDWNW 257
Cdd:PRK10789 378 PLTKLQLDSwrsrLAVVSQTPFlFSD-----TVANNIALGRPDATQQEIEHVAR---LASVHDDILRlPQGYDTEVGERG 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1216866492 258 YdVLSPGEMQRLSFARLFYLQPKYAVLDEATSAL---TE-EVESELYRIGQqlGMTFISVGHRQS 318
Cdd:PRK10789 450 V-MLSGGQKQRISIARALLLNAEILILDDALSAVdgrTEhQILHNLRQWGE--GRTVIISAHRLS 511
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
140-321 |
4.22e-07 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 50.20 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 140 LIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLT--------DFGPHGVLFLPQ-KPFFTDGT 206
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVifngQPMSklssaakaELRNQKLGFIYQfHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 207 LREQVIYPLKevypDSGSADDERILRFLELAGLSNLVARTEGLDQQvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:PRK11629 104 ALENVAMPLL----IGKKKPAEINSRALEMLAAVGLEHRANHRPSE--------LSGGERQRVAIARALVNNPRLVLADE 171
|
170 180 190
....*....|....*....|....*....|....*....
gi 1216866492 287 ATSALTEEVESELYRIGQQL----GMTFISVGHRQSLEK 321
Cdd:PRK11629 172 PTGNLDARNADSIFQLLGELnrlqGTAFLVVTHDLQLAK 210
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
136-318 |
6.06e-07 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 50.87 E-value: 6.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMltDFGP-----HGVL-----FLPQKP----- 200
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL--DGRPlsslsHSVLrqgvaMVQQDPvvlad 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 201 -FFTDGTLREQViyplkevypdsgsaDDERILRFLELAGLSNLV-ARTEGLDQQVDwNWYDVLSPGEMQRLSFARLFYLQ 278
Cdd:PRK10790 430 tFLANVTLGRDI--------------SEEQVWQALETVQLAELArSLPDGLYTPLG-EQGNNLSVGQKQLLALARVLVQT 494
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1216866492 279 PKYAVLDEATSAL---TEE-VESELYRIGQQlgMTFISVGHRQS 318
Cdd:PRK10790 495 PQILILDEATANIdsgTEQaIQQALAAVREH--TTLVVIAHRLS 536
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
126-291 |
7.35e-07 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 49.11 E-value: 7.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSsdKPLIKDLSLKISEGQSLLItGNTGTGKTSLLRVLGGLWTSTRGSVQML------TDFGPHGVL-FLPQ 198
Cdd:cd03264 3 LENLTKRYGK--KRALDGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIRIDgqdvlkQPQKLRRRIgYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 199 KP-FFTDGTLREQVIYP--LKEVyPDSGSadDERILRFLELAGLSNLVARTEGldqqvdwnwydVLSPGEMQRLSFARLF 275
Cdd:cd03264 80 EFgVYPNFTVREFLDYIawLKGI-PSKEV--KARVDEVLELVNLGDRAKKKIG-----------SLSGGMRRRVGIAQAL 145
|
170
....*....|....*.
gi 1216866492 276 YLQPKYAVLDEATSAL 291
Cdd:cd03264 146 VGDPSILIVDEPTAGL 161
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
141-315 |
8.75e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 49.85 E-value: 8.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV---QMLTDFGPHGVLFL----------PQKPFFTdGTL 207
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIlfdGKPIDYSRKGLMKLresvgmvfqdPDNQLFS-ASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 208 REQVIY-------PLKEVYpdsgsaddERILRFLELAGLSNLVarteglDQQVDWnwydvLSPGEMQRLSFARLFYLQPK 280
Cdd:PRK13636 101 YQDVSFgavnlklPEDEVR--------KRVDNALKRTGIEHLK------DKPTHC-----LSFGQKKRVAIAGVLVMEPK 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 1216866492 281 YAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGH 315
Cdd:PRK13636 162 VLVLDEPTAGLdpmgVSEIMKLLVEMQKELGLTIIIATH 200
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
143-315 |
1.00e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 49.44 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 143 DLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLtdfGPH-----------------GVLF-LPQKPFFTD 204
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA---GYHitpetgnknlkklrkkvSLVFqFPEAQLFEN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GTLREQVIYPLkevypDSGSADDE---RILRFLELAGLSNLVARTEGLDqqvdwnwydvLSPGEMQRLSFARLFYLQPKY 281
Cdd:PRK13641 102 TVLKDVEFGPK-----NFGFSEDEakeKALKWLKKVGLSEDLISKSPFE----------LSGGQMRRVAIAGVMAYEPEI 166
|
170 180 190
....*....|....*....|....*....|....*..
gi 1216866492 282 AVLDEATSALTEEVESELYRI---GQQLGMTFISVGH 315
Cdd:PRK13641 167 LCLDEPAAGLDPEGRKEMMQLfkdYQKAGHTVILVTH 203
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
124-315 |
1.08e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 50.32 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 124 FLLERVSISAPSsDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFgphGVLFLPQKPFFT 203
Cdd:TIGR03719 5 YTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQPGI---KVGYLPQEPQLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 204 DG-TLREQV----------IYPLKEVYPDSGSADDERILRFLELAGLSNLVARTEG--LDQQVD----------WNWyDV 260
Cdd:TIGR03719 81 PTkTVRENVeegvaeikdaLDRFNEISAKYAEPDADFDKLAAEQAELQEIIDAADAwdLDSQLEiamdalrcppWDA-DV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1216866492 261 --LSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGH 315
Cdd:TIGR03719 160 tkLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEYPGTVVAVTH 216
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
115-288 |
1.24e-06 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 50.06 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 115 PAAEPADTAFLLERVSISAPssDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqmltDFGPHGVL 194
Cdd:COG0488 307 PPERLGKKVLELEGLSKSYG--DKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV----KLGETVKI 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 195 -FLPQKPFFTDGTLReqviyPLKEVYPDSGSADDERILRFLELAGLSNlvartEGLDQQVdwnwyDVLSPGEMQRLSFAR 273
Cdd:COG0488 381 gYFDQHQEELDPDKT-----VLDELRDGAPGGTEQEVRGYLGRFLFSG-----DDAFKPV-----GVLSGGEKARLALAK 445
|
170
....*....|....*
gi 1216866492 274 LFYLQPKYAVLDEAT 288
Cdd:COG0488 446 LLLSPPNVLLLDEPT 460
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
124-315 |
1.26e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 49.07 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 124 FLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLW-----TSTRGSVQML------TDFGP-- 190
Cdd:PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFgrniysPDVDPie 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 191 ----HGVLFLPQKPFfTDGTLREQVIYPLKevypdsgsadderilrflelagLSNLVARTEGLDQQVDWN------WYDV 260
Cdd:PRK14267 83 vrreVGMVFQYPNPF-PHLTIYDNVAIGVK----------------------LNGLVKSKKELDERVEWAlkkaalWDEV 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866492 261 ----------LSPGEMQRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLgmTFISVGH 315
Cdd:PRK14267 140 kdrlndypsnLSGGQRQRLVIARALAMKPKILLMDEPTANIdpvgTAKIEELLFELKKEY--TIVLVTH 206
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
137-329 |
1.30e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.41 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV-----QMLTDFGPH------GVLflPQKPFFTDG 205
Cdd:PTZ00265 397 DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIiindsHNLKDINLKwwrskiGVV--SQDPLLFSN 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQV---IYPLKEV--------------YPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWNW----------- 257
Cdd:PTZ00265 475 SIKNNIkysLYSLKDLealsnyynedgndsQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTikdsevvdvsk 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 258 --------------YDVL--------SPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRI-----GQQLGMTF 310
Cdd:PTZ00265 555 kvlihdfvsalpdkYETLvgsnasklSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTinnlkGNENRITI 634
|
250
....*....|....*....
gi 1216866492 311 IsVGHRQSLEKFHSLVLKL 329
Cdd:PTZ00265 635 I-IAHRLSTIRYANTIFVL 652
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
140-291 |
1.52e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 49.08 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 140 LIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLwTSTRGSVQM-------------LTDFGphgvlFLPQKPFFTDGT 206
Cdd:cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQIdgvswnsvplqkwRKAFG-----VIPQKVFIFSGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 207 LReqviyplKEVYPdSGSADDERILRFLELAGLSNLVARTEG-LDQQVDWNWYdVLSPGEMQRLSFARLFYLQPKYAVLD 285
Cdd:cd03289 93 FR-------KNLDP-YGKWSDEEIWKVAEEVGLKSVIEQFPGqLDFVLVDGGC-VLSHGHKQLMCLARSVLSKAKILLLD 163
|
....*.
gi 1216866492 286 EATSAL 291
Cdd:cd03289 164 EPSAHL 169
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
136-315 |
1.71e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 48.94 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFG------PHGVLFLPQKPFFTDG 205
Cdd:PRK13642 18 SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIdgelLTAENvwnlrrKIGMVFQNPDNQFVGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 206 TLREQVIYPLKevypDSGSADDERILRFLE-LAGLSNLVARTEGLDQqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVL 284
Cdd:PRK13642 98 TVEDDVAFGME----NQGIPREEMIKRVDEaLLAVNMLDFKTREPAR---------LSGGQKQRVAVAGIIALRPEIIIL 164
|
170 180 190
....*....|....*....|....*....|....*
gi 1216866492 285 DEATSALTEEVESELYRIGQQLG----MTFISVGH 315
Cdd:PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKekyqLTVLSITH 199
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
138-295 |
2.04e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 49.78 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqmltdFGPHGVLFLPQKPFFTDGTLREQVIYplke 217
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-----WAERSIAYVPQQAWIMNATVRGNILF---- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 218 vYPDSGSADDERILRFLEL-AGLSNLVA--RTEGLDQQVDwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEE 294
Cdd:PTZ00243 744 -FDEEDAARLADAVRVSQLeADLAQLGGglETEIGEKGVN------LSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816
|
.
gi 1216866492 295 V 295
Cdd:PTZ00243 817 V 817
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
137-312 |
2.11e-06 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 48.46 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV---QMLTDFGPHGVLFL-----------PQKPFF 202
Cdd:PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVlwqGKPLDYSKRGLLALrqqvatvfqdpEQQIFY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 TDgtLREQVIYPLKEVypdsGSADDERILRFLELAGLSNlvarTEGLDQQVdwnwYDVLSPGEMQRLSFARLFYLQPKYA 282
Cdd:PRK13638 93 TD--IDSDIAFSLRNL----GVPEAEITRRVDEALTLVD----AQHFRHQP----IQCLSHGQKKRVAIAGALVLQARYL 158
|
170 180 190
....*....|....*....|....*....|....
gi 1216866492 283 VLDEATSALTEEVESELY----RIGQQLGMTFIS 312
Cdd:PRK13638 159 LLDEPTAGLDPAGRTQMIaiirRIVAQGNHVIIS 192
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
111-312 |
2.51e-06 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 48.93 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 111 PPGWPAAEPADTAFLL--ERVSISAP---------SSDKPLIKDLSLKISEGQSLLITGNTGTGKTS----LLRVL---G 172
Cdd:PRK15134 261 PSGDPVPLPEPASPLLdvEQLQVAFPirkgilkrtVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLInsqG 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 173 GLWTS-----TRGSVQMLTDFGPHGVLFlpQKPfftDGTLR-----EQVIYPLKEV-YPD-SGSADDERILRFLELAGLs 240
Cdd:PRK15134 341 EIWFDgqplhNLNRRQLLPVRHRIQVVF--QDP---NSSLNprlnvLQIIEEGLRVhQPTlSAAQREQQVIAVMEEVGL- 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866492 241 nlvarteglDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESE----LYRIGQ--QLGMTFIS 312
Cdd:PRK15134 415 ---------DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQilalLKSLQQkhQLAYLFIS 483
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
135-316 |
2.57e-06 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 47.71 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 135 SSDKPLIKDLSLKISEGQSLLITGNTGTGKTS-LLRVLGGL--------WTSTRGSVQMLTDFGP---HGVLFLPQKPFF 202
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSlLLAILGEMqtlegkvhWSNKNESEPSFEATRSrnrYSVAYAAQKPWL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 TDGTLREQVIY--PL-----KEVYPDSGSADDERILRFLElaglsnlvaRTEGLDQQVDwnwydvLSPGEMQRLSFARLF 275
Cdd:cd03290 91 LNATVEENITFgsPFnkqryKAVTDACSLQPDIDLLPFGD---------QTEIGERGIN------LSGGQRQRICVARAL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1216866492 276 YLQPKYAVLDEATSALTEEVESELYRIG-----QQLGMTFISVGHR 316
Cdd:cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGilkflQDDKRTLVLVTHK 201
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
137-290 |
2.89e-06 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 47.53 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM------LTDFGpHGvlFLPqkpfftDGTLREQ 210
Cdd:cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVrgrvssLLGLG-GG--FNP------ELTGREN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 211 vIYPLKEVYPDSGSADDERILRFLELAGLsnlvarTEGLDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSA 290
Cdd:cd03220 105 -IYLNGRLLGLSRKEIDEKIDEIIEFSEL------GDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAV 172
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
137-291 |
3.12e-06 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 48.68 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqMLTDFGPHG---------VLFLPQK---PFFTD 204
Cdd:PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEAlsaraasrrVASVPQDtslSFEFD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GtlrEQVI----YPLKEVYPDSGSADDERILRFLELAGLSNLVARTegldqqvdwnwYDVLSPGEMQRLSFARLFYLQPK 280
Cdd:PRK09536 94 V---RQVVemgrTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVLLARALAQATP 159
|
170
....*....|.
gi 1216866492 281 YAVLDEATSAL 291
Cdd:PRK09536 160 VLLLDEPTASL 170
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
140-318 |
3.48e-06 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 47.82 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 140 LIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFGPHGVLFLPQKPFFTDgtLREQV-------- 211
Cdd:PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ--LRQHVgfvfqnfn 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 IYPLKEVYPD--------SGSADDERILRFLELAGLSNLVARTEGLDQQvdwnwydvLSPGEMQRLSFARLFYLQPKYAV 283
Cdd:PRK11264 96 LFPHRTVLENiiegpvivKGEPKEEATARARELLAKVGLAGKETSYPRR--------LSGGQQQRVAIARALAMRPEVIL 167
|
170 180 190
....*....|....*....|....*....|....*...
gi 1216866492 284 LDEATSALTEEVESELYRIGQQLG---MTFISVGHRQS 318
Cdd:PRK11264 168 FDEPTSALDPELVGEVLNTIRQLAqekRTMVIVTHEMS 205
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
119-184 |
3.80e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 47.15 E-value: 3.80e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1216866492 119 PADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM 184
Cdd:PRK13543 5 LHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
142-291 |
3.94e-06 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 48.53 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 142 KDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLwTSTRGSVQM----LTDFGPHG---------VLFlpQKPFftdGTL- 207
Cdd:COG4172 303 DGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFdgqdLDGLSRRAlrplrrrmqVVF--QDPF---GSLs 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 208 -R---EQVIY-PLKEVYPDSGSAD-DERILRFLELAGLS-NLVAR--TEgldqqvdwnwydvLSPGEMQRLSFARLFYLQ 278
Cdd:COG4172 377 pRmtvGQIIAeGLRVHGPGLSAAErRARVAEALEEVGLDpAARHRypHE-------------FSGGQRQRIAIARALILE 443
|
170
....*....|...
gi 1216866492 279 PKYAVLDEATSAL 291
Cdd:COG4172 444 PKLLVLDEPTSAL 456
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
126-309 |
4.03e-06 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 47.87 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLI--KDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH-------- 191
Cdd:PRK11153 4 LKNISKVFPQGGRTIHalNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVlvdgQDLTALSEKelrkarrq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 192 -GVLF-----LPQKpfftdgTLREQVIYPLkEVYPDSGSADDERILRFLELAGLSNLVARtegldqqvdwnwYDV-LSPG 264
Cdd:PRK11153 84 iGMIFqhfnlLSSR------TVFDNVALPL-ELAGTPKAEIKARVTELLELVGLSDKADR------------YPAqLSGG 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 265 EMQRLSFARLFYLQPKyaVL--DEATSAL----TEEVESELYRIGQQLGMT 309
Cdd:PRK11153 145 QKQRVAIARALASNPK--VLlcDEATSALdpatTRSILELLKDINRELGLT 193
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
146-336 |
4.73e-06 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 47.08 E-value: 4.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 146 LKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQML------------TDFGPHGVLFLPQKpFFTDGTL--REQV 211
Cdd:PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVgqplhqmdeearAKLRAKHVGFVFQS-FMLIPTLnaLENV 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 IYP-LKEVYPDSGSADDERILrfLELAGLSNlvaRTEGLDQQvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSA 290
Cdd:PRK10584 110 ELPaLLRGESSRQSRNGAKAL--LEQLGLGK---RLDHLPAQ--------LSGGEQQRVALARAFNGRPDVLFADEPTGN 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1216866492 291 LT----EEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKLCGGGRWE 336
Cdd:PRK10584 177 LDrqtgDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
122-315 |
5.13e-06 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 47.45 E-value: 5.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 122 TAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFGP---HGVLFLPQ 198
Cdd:PRK11831 4 VANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPamsRSRLYTVR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 199 K---------PFFTDGTLREQVIYPLKEvypdsGSADDERILRF-----LELAGL---SNLVARTegldqqvdwnwydvL 261
Cdd:PRK11831 84 KrmsmlfqsgALFTDMNVFDNVAYPLRE-----HTQLPAPLLHStvmmkLEAVGLrgaAKLMPSE--------------L 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866492 262 SPGEMQRLSFARLFYLQPKYAVLDEA-------TSALTEEVESELyriGQQLGMTFISVGH 315
Cdd:PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPfvgqdpiTMGVLVKLISEL---NSALGVTCVVVSH 202
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
261-316 |
8.17e-06 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 45.50 E-value: 8.17e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 261 LSPGEMQRLSFARLFYLQPKYAVLDEATSALT-EEVEsELYRIGQQL---GMTFISVGHR 316
Cdd:cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTpAEVE-RLFKVIRRLraqGVAVIFISHR 141
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
125-293 |
1.04e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 45.71 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 125 LLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQML-----TDFGPH--GVLFLP 197
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFErqsikKDLCTYqkQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QK----PFFtdgTLREQVIYplkEVYPDSGSADDERILRFLElagLSNLVARTEGLdqqvdwnwydvLSPGEMQRLSFAR 273
Cdd:PRK13540 81 HRsginPYL---TLRENCLY---DIHFSPGAVGITELCRLFS---LEHLIDYPCGL-----------LSSGQKRQVALLR 140
|
170 180
....*....|....*....|
gi 1216866492 274 LFYLQPKYAVLDEATSALTE 293
Cdd:PRK13540 141 LWMSKAKLWLLDEPLVALDE 160
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
126-323 |
1.47e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 46.13 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSdKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGPH-------GVL 194
Cdd:PRK13644 4 LENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVsgidTGDFSKLqgirklvGIV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 195 FLPQKPFFTDGTLREQVIY-PLKEVYPDsgSADDERILRFLELAGLSNLVARTEgldqqvdwnwyDVLSPGEMQRLSFAR 273
Cdd:PRK13644 83 FQNPETQFVGRTVEEDLAFgPENLCLPP--IEIRKRVDRALAEIGLEKYRHRSP-----------KTLSGGQGQCVALAG 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1216866492 274 LFYLQPKYAVLDEATSALTEEV-ESELYRIGQ--QLGMTFISVGHrqSLEKFH 323
Cdd:PRK13644 150 ILTMEPECLIFDEVTSMLDPDSgIAVLERIKKlhEKGKTIVYITH--NLEELH 200
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
137-297 |
2.16e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.04 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQML--TDFGphgvlFLPQ---KPFFTDGTLREQV 211
Cdd:PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSenANIG-----YYAQdhaYDFENDLTLFDWM 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 212 IYPLKEvypdsgsADDERILRflelAGLSNLVARTEGLDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLDEATSAL 291
Cdd:PRK15064 406 SQWRQE-------GDDEQAVR----GTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469
|
....*..
gi 1216866492 292 -TEEVES 297
Cdd:PRK15064 470 dMESIES 476
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
138-315 |
2.25e-05 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 45.36 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPHGV-----LFLPQKPFFTDGTLR 208
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVwldgEHIQHYASKEVarrigLLAQNATTPGDITVQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 209 EQVI---YPLKEVYPDSGSADDERILRFLELAGLSNLVarteglDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLD 285
Cdd:PRK10253 100 ELVArgrYPHQPLFTRWRKEDEEAVTKAMQATGITHLA------DQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLD 168
|
170 180 190
....*....|....*....|....*....|....*..
gi 1216866492 286 EATSALT-------EEVESELYRigqQLGMTFISVGH 315
Cdd:PRK10253 169 EPTTWLDishqidlLELLSELNR---EKGYTLAAVLH 202
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
138-315 |
2.97e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 45.08 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVqmltdfgphgvlflpqkpfFTDG--TLREQVIYPL 215
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-------------------YVDGldTSDEENLWDI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 216 KE----VY--PDSG--SADDERILRFlelaGLSNLVARTEGLDQQVDW-----NWYD-------VLSPGEMQRLSFARLF 275
Cdd:PRK13633 84 RNkagmVFqnPDNQivATIVEEDVAF----GPENLGIPPEEIRERVDEslkkvGMYEyrrhaphLLSGGQKQRVAIAGIL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1216866492 276 YLQPKYAVLDEATSALT----EEVESELYRIGQQLGMTFISVGH 315
Cdd:PRK13633 160 AMRPECIIFDEPTAMLDpsgrREVVNTIKELNKKYGITIILITH 203
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
142-183 |
3.16e-05 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 44.69 E-value: 3.16e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1216866492 142 KDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQ 183
Cdd:COG1134 43 KDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVE 84
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
138-286 |
4.95e-05 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 44.07 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 138 KPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV----QMLTDFGPH-----GVLFLPQKP-FFTDGTL 207
Cdd:cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIlldgQDITKLPMHkrarlGIGYLPQEAsIFRKLTV 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866492 208 REQVIYPLkEVYPDSGSADDERILRFLELAGLSNLvARTEGLDqqvdwnwydvLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:cd03218 93 EENILAVL-EIRGLSKKEREEKLEELLEEFHITHL-RKSKASS----------LSGGERRRVEIARALATNPKFLLLDE 159
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
141-315 |
4.96e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 44.39 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQmLTDFGPH---------------GVLF-LPQKPFFTD 204
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT-VDDITIThktkdkyirpvrkriGMVFqFPESQLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 205 GTLREQVIYP------LKEVypdsgsadDERILRFLELAGLSNLVARTEGLDqqvdwnwydvLSPGEMQRLSFARLFYLQ 278
Cdd:PRK13646 102 TVEREIIFGPknfkmnLDEV--------KNYAHRLLMDLGFSRDVMSQSPFQ----------MSGGQMRKIAIVSILAMN 163
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1216866492 279 PKYAVLDEATSALTEEVESELYRIGQQL----GMTFISVGH 315
Cdd:PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLqtdeNKTIILVSH 204
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
198-316 |
6.28e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.02 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 198 QKPFFTDGTLREQVIYPlKEvypDSGSADDERILRFlelAGLSNLVartEGLDQQVDWN---WYDVLSPGEMQRLSFARL 274
Cdd:PTZ00265 1303 QEPMLFNMSIYENIKFG-KE---DATREDVKRACKF---AAIDEFI---ESLPNKYDTNvgpYGKSLSGGQKQRIAIARA 1372
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1216866492 275 FYLQPKYAVLDEATSALTEE----VESELYRIGQQLGMTFISVGHR 316
Cdd:PTZ00265 1373 LLREPKILLLDEATSSLDSNseklIEKTIVDIKDKADKTIITIAHR 1418
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
141-315 |
6.63e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 44.46 E-value: 6.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM---LTDFGPHGVL--------FLPQKPFFT---DGT 206
Cdd:PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFngqRIDTLSPGKLqalrrdiqFIFQDPYASldpRQT 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 207 LREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVArtegldqqvdWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDE 286
Cdd:PRK10261 420 VGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA----------WRYPHEFSGGQRQRICIARALALNPKVIIADE 489
|
170 180 190
....*....|....*....|....*....|...
gi 1216866492 287 ATSALTEEVESE----LYRIGQQLGMTFISVGH 315
Cdd:PRK10261 490 AVSALDVSIRGQiinlLLDLQRDFGIAYLFISH 522
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
126-330 |
8.50e-05 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 44.05 E-value: 8.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 126 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFGPH-------GVLFLPQ 198
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPArarlaraRIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 199 ----KPFFtdgTLREQVIYpLKEVYPDSGSADDERILRFLELAGLSNLVarteglDQQVdwnwyDVLSPGEMQRLSFARL 274
Cdd:PRK13536 122 fdnlDLEF---TVRENLLV-FGRYFGMSTREIEAVIPSLLEFARLESKA------DARV-----SDLSGGMKRRLTLARA 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1216866492 275 FYLQPKYAVLDEATSALT--------EEVESELYRigqqlGMTFISVGHrqSLEKFHSLVLKLC 330
Cdd:PRK13536 187 LINDPQLLILDEPTTGLDpharhliwERLRSLLAR-----GKTILLTTH--FMEEAERLCDRLC 243
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
139-316 |
8.72e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.38 E-value: 8.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 139 PLI-KDLSLKISEGQSLLITGNTGTGKTSLL-------RVLGG-LWTSTRgsvqmltDFGPHGV-----LF--LPQKPFF 202
Cdd:PTZ00243 1323 PLVlRGVSFRIAPREKVGIVGRTGSGKSTLLltfmrmvEVCGGeIRVNGR-------EIGAYGLrelrrQFsmIPQDPVL 1395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 203 TDGTLREQViYPLKEvypdsgsADDERILRFLELAGLSNLVA-RTEGLDQQV---DWNWydvlSPGEMQRLSFAR-LFYL 277
Cdd:PTZ00243 1396 FDGTVRQNV-DPFLE-------ASSAEVWAALELVGLRERVAsESEGIDSRVlegGSNY----SVGQRQLMCMARaLLKK 1463
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1216866492 278 QPKYAVLDEATSalteEVESELYRIGQQLGM------TFISVGHR 316
Cdd:PTZ00243 1464 GSGFILMDEATA----NIDPALDRQIQATVMsafsayTVITIAHR 1504
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
137-315 |
1.57e-04 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 43.25 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 137 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGL--WTSTRGSV------------------------QMLTDFGP 190
Cdd:TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIiyhvalcekcgyverpskvgepcpVCGGTLEP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 191 HGVLFL-PQKPFFTDGTLR--------------EQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQvdw 255
Cdd:TIGR03269 92 EEVDFWnLSDKLRRRIRKRiaimlqrtfalygdDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD--- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1216866492 256 nwydvLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEE----VESELYRIGQQLGMTFISVGH 315
Cdd:TIGR03269 169 -----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQtaklVHNALEEAVKASGISMVLTSH 227
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
141-315 |
1.78e-04 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 42.46 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRV---LGGLWTSTR--GSVQMLTD--FGPH----------GVLFlpQKPFFT 203
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrLNDLIPGFRveGKVTFHGKnlYAPDvdpvevrrriGMVF--QKPNPF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 204 DGTLREQVIYPLKeVYPDSGSADdERILRFLELAGLSNLVA---RTEGLDqqvdwnwydvLSPGEMQRLSFARLFYLQPK 280
Cdd:PRK14243 104 PKSIYDNIAYGAR-INGYKGDMD-ELVERSLRQAALWDEVKdklKQSGLS----------LSGGQQQRLCIARAIAVQPE 171
|
170 180 190
....*....|....*....|....*....|....*....
gi 1216866492 281 YAVLDEATSAL----TEEVESELYRIGQQlgMTFISVGH 315
Cdd:PRK14243 172 VILMDEPCSALdpisTLRIEELMHELKEQ--YTIIIVTH 208
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
136-313 |
4.67e-04 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 40.71 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLwTSTRGSVQMLTDFGPHgvlflPQKPFFTdgTLREQVIYpl 215
Cdd:cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGI-----PYKEFAE--KYPGEIIY-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 216 kevypdsGSADD--------ERILRFlelaglsnlVARTEGlDQQVdwnwyDVLSPGEMQRLSFARLFYLQPKYAVLDEA 287
Cdd:cd03233 88 -------VSEEDvhfptltvRETLDF---------ALRCKG-NEFV-----RGISGGERKRVSIAEALVSRASVLCWDNS 145
|
170 180 190
....*....|....*....|....*....|.
gi 1216866492 288 T----SALTEEVESELYRIGQQLGMT-FISV 313
Cdd:cd03233 146 TrgldSSTALEILKCIRTMADVLKTTtFVSL 176
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
151-319 |
5.12e-04 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 41.01 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 151 GQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQmltdFGPHGVLFLPQK--PFftdgtLREQV--IYPLKEVYPDSGSAD 226
Cdd:PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW----FSGHDITRLKNRevPF-----LRRQIgmIFQDHHLLMDRTVYD 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 227 DERILRFLELAGLSNLVARTEGLDQQVDW-----NWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYR 301
Cdd:PRK10908 99 NVAIPLIIAGASGDDIRRRVSAALDKVGLldkakNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
|
170 180
....*....|....*....|.
gi 1216866492 302 IGQQ---LGMTFISVGHRQSL 319
Cdd:PRK10908 179 LFEEfnrVGVTVLMATHDIGL 199
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
261-316 |
5.40e-04 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 41.54 E-value: 5.40e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 261 LSPGEMQRLSFARLFYLQPKYAVLDEATSALTE-EVESeLYRIGQQL---GMTFISVGHR 316
Cdd:COG1129 141 LSVAQQQLVEIARALSRDARVLILDEPTASLTErEVER-LFRIIRRLkaqGVAIIYISHR 199
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
115-197 |
5.74e-04 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 41.55 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 115 PAAEPADTAFLLERVSIsAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQM----LTDFGP 190
Cdd:COG3845 249 APAEPGEVVLEVENLSV-RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLdgedITGLSP 327
|
90
....*....|..
gi 1216866492 191 -----HGVLFLP 197
Cdd:COG3845 328 rerrrLGVAYIP 339
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
136-318 |
6.19e-04 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 40.91 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 136 SDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLW-----TSTRGSVqmltDFGPH----------------GVL 194
Cdd:PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNdlnpeVTITGSI----VYNGHniysprtdtvdlrkeiGMV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 195 FLPQKPFftDGTLREQVIYPLKEvypdSGSADDERILRFLElaglsnlvartEGLDQQVDWN-----WYDV---LSPGEM 266
Cdd:PRK14239 92 FQQPNPF--PMSIYENVVYGLRL----KGIKDKQVLDEAVE-----------KSLKGASIWDevkdrLHDSalgLSGGQQ 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1216866492 267 QRLSFARLFYLQPKYAVLDEATSAL----TEEVESELYRIGQQLGMTFISVGHRQS 318
Cdd:PRK14239 155 QRVCIARVLATSPKIILLDEPTSALdpisAGKIEETLLGLKDDYTMLLVTRSMQQA 210
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
261-312 |
6.38e-04 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 41.55 E-value: 6.38e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866492 261 LSPGEMQRLSFARLFYLQPKYAVLDEATSALT-EEVEsELYRIGQQL---GMT--FIS 312
Cdd:COG3845 142 LSVGEQQRVEILKALYRGARILILDEPTAVLTpQEAD-ELFEILRRLaaeGKSiiFIT 198
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
143-312 |
8.28e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 40.87 E-value: 8.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 143 DLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQML---TDFGP------HGVLFLPQKpffTDGTLREQVI- 212
Cdd:PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQgkeIDFKSskealeNGISMVHQE---LNLVLQRSVMd 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 213 ------YPLKEVYPDSGSADDERILRFLELaglsnlvarteglDQQVDWN-WYDVLSPGEMQRLSFARLFYLQPKYAVLD 285
Cdd:PRK10982 93 nmwlgrYPTKGMFVDQDKMYRDTKAIFDEL-------------DIDIDPRaKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190
....*....|....*....|....*....|..
gi 1216866492 286 EATSALTEEVESELYRIGQQL-----GMTFIS 312
Cdd:PRK10982 160 EPTSSLTEKEVNHLFTIIRKLkergcGIVYIS 191
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
141-315 |
3.42e-03 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 38.56 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 141 IKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLtdfgphGVLFLPQkpffTDGTLREQVIYPLKEvyP 220
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVM------GREVNAE----NEKWVRSKVGLVFQD--P 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866492 221 D----SGSADDERIL--RFLELAGlSNLVARTEGLDQQVD-WNWYDV----LSPGEMQRLSFARLFYLQPKYAVLDEATS 289
Cdd:PRK13647 89 DdqvfSSTVWDDVAFgpVNMGLDK-DEVERRVEEALKAVRmWDFRDKppyhLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
|
170 180 190
....*....|....*....|....*....|
gi 1216866492 290 AL----TEEVESELYRIGQQlGMTFISVGH 315
Cdd:PRK13647 168 YLdprgQETLMEILDRLHNQ-GKTVIVATH 196
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
133-172 |
7.54e-03 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 37.45 E-value: 7.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1216866492 133 APSSDKPLIKDL-SLK-ISEGQSLLITGNTGTGKTSLLRVLG 172
Cdd:COG1484 79 QPGLDRRQILELaTLDfIERGENLILLGPPGTGKTHLAIALG 120
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
133-167 |
9.55e-03 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 37.07 E-value: 9.55e-03
10 20 30
....*....|....*....|....*....|....*..
gi 1216866492 133 APSSDKPLIKDL-SLK-ISEGQSLLITGNTGTGKTSL 167
Cdd:NF038214 70 APGLDKAQIRELaTLDfIERAENVLLLGPPGTGKTHL 106
|
|
| |
