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Conserved domains on  [gi|1394533425|ref|NP_001350789|]
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small ribosomal subunit protein uS9 isoform 3 [Homo sapiens]

Protein Classification

uS9 family ribosomal protein( domain architecture ID 1076)

uS9 family ribosomal protein is a component of the small ribosomal subunit which has a long protruding C-terminal tail (CTT) that extends towards the mRNA cleft of the ribosome.

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsI super family cl00334
30S ribosomal protein S9; Reviewed
 6-86 2.23e-47

30S ribosomal protein S9; Reviewed


The actual alignment was detected with superfamily member PLN00210:

Pssm-ID: 469725  Cd Length: 141  Bit Score: 150.26  E-value: 2.23e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1394533425   6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGES 85
Cdd:PLN00210    1 ATESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIR 80


                  .
gi 1394533425  86 Q 86
Cdd:PLN00210   81 Q 81
 
Name Accession Description Interval E-value
PLN00210 PLN00210
40S ribosomal protein S16; Provisional
 6-86 2.23e-47

40S ribosomal protein S16; Provisional


Pssm-ID: 177799  Cd Length: 141  Bit Score: 150.26  E-value: 2.23e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1394533425   6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGES 85
Cdd:PLN00210    1 ATESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIR 80


                  .
gi 1394533425  86 Q 86
Cdd:PLN00210   81 Q 81
Ribosomal_S9 pfam00380
Ribosomal protein S9/S16; This family includes small ribosomal subunit S9 from prokaryotes and ...
 14-82 2.09e-24

Ribosomal protein S9/S16; This family includes small ribosomal subunit S9 from prokaryotes and S16 from eukaryotes.


Pssm-ID: 459791  Cd Length: 121  Bit Score: 90.85  E-value: 2.09e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1394533425  14 GRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKErfAGVDIRVRVKGGGHVAQIY 82
Cdd:pfam00380   1 GRRKTAVARVYLKPGTGKITVNGRPLEEYFPReTLREKVLEPLLLTGTL--GKFDIFVTVKGGGISGQAG 68
RpsI COG0103
Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S9 ...
 8-80 8.01e-18

Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S9 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439873  Cd Length: 130  Bit Score: 74.30  E-value: 8.01e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1394533425   8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKErfAGVDIRVRVKGGGHVAQ 80
Cdd:COG0103     4 KVYYGTGRRKTAVARVRLKPGTGKITVNGKPLEEYFPReTLRMKVLQPLELTGTE--GKFDVIVNVKGGGISGQ 75
 
Name Accession Description Interval E-value
PLN00210 PLN00210
40S ribosomal protein S16; Provisional
 6-86 2.23e-47

40S ribosomal protein S16; Provisional


Pssm-ID: 177799  Cd Length: 141  Bit Score: 150.26  E-value: 2.23e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1394533425   6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGES 85
Cdd:PLN00210    1 ATESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIR 80


                  .
gi 1394533425  86 Q 86
Cdd:PLN00210   81 Q 81
PTZ00086 PTZ00086
40S ribosomal protein S16; Provisional
 6-89 3.66e-43

40S ribosomal protein S16; Provisional


Pssm-ID: 185437  Cd Length: 147  Bit Score: 139.44  E-value: 3.66e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1394533425   6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGES 85
Cdd:PTZ00086    7 KLKQVQTFGKKKTAVAVALVTKGKGLIRVNGVPLDLINPETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAIR 86


                  ....
gi 1394533425  86 QELG 89
Cdd:PTZ00086   87 QAIA 90
Ribosomal_S9 pfam00380
Ribosomal protein S9/S16; This family includes small ribosomal subunit S9 from prokaryotes and ...
 14-82 2.09e-24

Ribosomal protein S9/S16; This family includes small ribosomal subunit S9 from prokaryotes and S16 from eukaryotes.


Pssm-ID: 459791  Cd Length: 121  Bit Score: 90.85  E-value: 2.09e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1394533425  14 GRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKErfAGVDIRVRVKGGGHVAQIY 82
Cdd:pfam00380   1 GRRKTAVARVYLKPGTGKITVNGRPLEEYFPReTLREKVLEPLLLTGTL--GKFDIFVTVKGGGISGQAG 68
rps9p PRK00474
30S ribosomal protein S9P; Reviewed
 10-80 2.31e-21

30S ribosomal protein S9P; Reviewed


Pssm-ID: 179041  Cd Length: 134  Bit Score: 83.38  E-value: 2.31e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1394533425  10 VQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 80
Cdd:PRK00474    5 VITSGKRKTAIARATIREGKGRVRINGVPLELIEPELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQ 75
RpsI COG0103
Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S9 ...
 8-80 8.01e-18

Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S9 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439873  Cd Length: 130  Bit Score: 74.30  E-value: 8.01e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1394533425   8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKErfAGVDIRVRVKGGGHVAQ 80
Cdd:COG0103     4 KVYYGTGRRKTAVARVRLKPGTGKITVNGKPLEEYFPReTLRMKVLQPLELTGTE--GKFDVIVNVKGGGISGQ 75
rpsI PRK00132
30S ribosomal protein S9; Reviewed
 14-80 1.08e-11

30S ribosomal protein S9; Reviewed


Pssm-ID: 178888  Cd Length: 130  Bit Score: 58.18  E-value: 1.08e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1394533425  14 GRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKE-RFagvDIRVRVKGGGHVAQ 80
Cdd:PRK00132   10 GRRKTAVARVRLKPGSGKITVNGRDLEEYFPReTLRMVVRQPLELTETEgKF---DVYVTVKGGGISGQ 75
rps9 CHL00079
ribosomal protein S9
 14-80 4.64e-07

ribosomal protein S9


Pssm-ID: 214357  Cd Length: 130  Bit Score: 46.04  E-value: 4.64e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1394533425  14 GRKKTATAVAHCKRGNGLIKVNGRPLEMIeprtLQYK------LLEPVLLLGKErfAGVDIRVRVKGGGHVAQ 80
Cdd:CHL00079    9 GRRKTAVAQVRLVPGSGEIIINGKPAEEY----LQYNpnylnaIKAPLKLLGLE--NKYDIIVKVKGGGLTGQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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