|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
195-437 |
1.06e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 106.24 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektl 274
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkfhPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIy 354
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 355 atrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNARLERSVWQAGDSPSLLGENKPIWMHAEE 434
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
...
gi 1608193077 435 REE 437
Cdd:COG0457 213 ILT 215
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
195-388 |
2.71e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTL 274
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 -GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEI 353
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 1608193077 354 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL 388
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
187-398 |
1.57e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 83.43 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 187 AQHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNiLALVYRDQNKYKDAAHLLND 265
Cdd:NF040586 594 EVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELARE 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 266 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP---DVAKQLSN-LALLCQNQGKAE 341
Cdd:NF040586 673 VLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLANdLAALGDLDAALG 752
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1608193077 342 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:NF040586 753 EEALERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRR 809
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
238-314 |
3.12e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 73.58 E-value: 3.12e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608193077 238 DVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 314
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
211-398 |
1.00e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 211 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAI--REKTLGKDHPAVAATLNNL 288
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 289 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGkaeeveyYYRRALEI----YATR---LGPD 361
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLG-------DYREALELdrevLRRRrrvLGPD 557
|
170 180 190
....*....|....*....|....*....|....*..
gi 1608193077 362 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:NF040586 558 HPRTLLSANNLARDLRELGRYAEALDLLEEALERYRE 594
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-402 |
2.09e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 79.96 E-value: 2.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 212 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 291
Cdd:NF040586 492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 292 YGKRGKYKEAEPLCKRALEIREKVL-GKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 370
Cdd:NF040586 572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651
|
170 180 190
....*....|....*....|....*....|..
gi 1608193077 371 NLASCYLKQGKYQDAETLYKEILTRaHEKEFG 402
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDR-YRRVLG 682
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
197-395 |
2.90e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 79.58 E-value: 2.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 197 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTL 274
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 354
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1608193077 355 ATRL-GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 395
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYER 634
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
188-385 |
2.99e-14 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 76.11 E-value: 2.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 188 QHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-SGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDA 266
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 267 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYY 346
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
170 180 190
....*....|....*....|....*....|....*....
gi 1608193077 347 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 385
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
196-390 |
1.11e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 59.27 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 196 ARLRTlhNLVIQYASQGRYEvavplckQALEDLEKTSGHDhPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektlg 275
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLE-------VAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 276 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvlGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIya 355
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 1608193077 356 trlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYK 390
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
203-323 |
9.80e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.31 E-value: 9.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 203 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLN---ILALVYRDQNKYKDAAHLLNDALAIREKTLGKDH 278
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVNlanDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1608193077 279 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 323
Cdd:NF040586 774 PDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
291-498 |
2.36e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.52 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 291 LYgKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEV---------------------EY---- 345
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreldedtlerqrrvlglgedhPHtlmt 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 346 ------------YYRRALEI-------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRaHEKEFGSVNA 406
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDHP 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 407 RLERSVWQAGDSPSLLGEnkpiwmHAEEREESKDKRRDsapYGEygswyKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 486
Cdd:NF040586 560 RTLLSANNLARDLRELGR------YAEALDLLEEALER---YRE-----VLGGPDHPDTLRAAKSLAVALRRAGRLEEAL 625
|
250
....*....|...
gi 1608193077 487 TL-EDCASRSRKQ 498
Cdd:NF040586 626 ELaEDTYERYRRR 638
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
282-314 |
2.53e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.53e-04
10 20 30
....*....|....*....|....*....|...
gi 1608193077 282 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 314
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
26-132 |
1.49e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.21 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 26 QGLETLRGEHRALLAPLASHEAGEAEpgSQERCLLLRRSLEAIELGLGEAQVILA-LSSHLGAVESEKQKLRAQVRRLVQ 104
Cdd:pfam19220 62 AAYGKLRRELAGLTRRLSAAEGELEE--LVARLAKLEAALREAEAAKEELRIELRdKTAQAEALERQLAAETEQNRALEE 139
|
90 100
....*....|....*....|....*...
gi 1608193077 105 ENQWLREELAGTQQKLQRSEQAVAQLEE 132
Cdd:pfam19220 140 ENKALREEAQAAEKALQRAEGELATARE 167
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
203-283 |
7.99e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.52 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 203 NLVIQYASQGRYEVAvpLCKQALEDLE------KTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGK 276
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRrllgedLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 1608193077 277 DHPAVAA 283
Cdd:NF040586 814 DHPDTVA 820
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
195-437 |
1.06e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 106.24 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektl 274
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkfhPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIy 354
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 355 atrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNARLERSVWQAGDSPSLLGENKPIWMHAEE 434
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
...
gi 1608193077 435 REE 437
Cdd:COG0457 213 ILT 215
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
186-396 |
6.82e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.82 E-value: 6.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 186 AAQHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKtsGHDHPDVATMLNILALVYRDQNKYKDAAHLLND 265
Cdd:COG3914 26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAA--AAALLLLAALLELAALLLQALGRYEEALALYRR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 266 ALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEY 345
Cdd:COG3914 104 ALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRLEEAIA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1608193077 346 YYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 396
Cdd:COG3914 168 ALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
195-388 |
2.71e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTL 274
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 -GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEI 353
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 1608193077 354 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL 388
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
187-398 |
1.57e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 83.43 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 187 AQHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNiLALVYRDQNKYKDAAHLLND 265
Cdd:NF040586 594 EVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELARE 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 266 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP---DVAKQLSN-LALLCQNQGKAE 341
Cdd:NF040586 673 VLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLANdLAALGDLDAALG 752
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1608193077 342 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:NF040586 753 EEALERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRR 809
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
238-314 |
3.12e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 73.58 E-value: 3.12e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608193077 238 DVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 314
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
211-398 |
1.00e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 211 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAI--REKTLGKDHPAVAATLNNL 288
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 289 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGkaeeveyYYRRALEI----YATR---LGPD 361
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLG-------DYREALELdrevLRRRrrvLGPD 557
|
170 180 190
....*....|....*....|....*....|....*..
gi 1608193077 362 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:NF040586 558 HPRTLLSANNLARDLRELGRYAEALDLLEEALERYRE 594
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
281-354 |
1.14e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 72.03 E-value: 1.14e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608193077 281 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 354
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-402 |
2.09e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 79.96 E-value: 2.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 212 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 291
Cdd:NF040586 492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 292 YGKRGKYKEAEPLCKRALEIREKVL-GKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 370
Cdd:NF040586 572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651
|
170 180 190
....*....|....*....|....*....|..
gi 1608193077 371 NLASCYLKQGKYQDAETLYKEILTRaHEKEFG 402
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDR-YRRVLG 682
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
197-395 |
2.90e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 79.58 E-value: 2.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 197 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTL 274
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 354
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1608193077 355 ATRL-GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 395
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYER 634
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
195-398 |
6.00e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.54 E-value: 6.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektl 274
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIy 354
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ- 207
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1608193077 355 atrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:COG2956 208 -------DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
208-422 |
1.23e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 208 YASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTlgkdhpavAATLNN 287
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD--------AEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 288 LAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAK 367
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1608193077 368 TKNNLASCYLKQGKYQDAETLYKEILtrAHEKEFGSVNARLERSVWQAGDSPSLL 422
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERAL--EQDPDYLPALPRLAELYEKLGDPEEAL 232
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
188-385 |
2.99e-14 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 76.11 E-value: 2.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 188 QHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-SGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDA 266
Cdd:NF040586 552 RVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDT 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 267 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYY 346
Cdd:NF040586 632 YERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
170 180 190
....*....|....*....|....*....|....*....
gi 1608193077 347 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 385
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAA 750
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
197-272 |
1.45e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 66.26 E-value: 1.45e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608193077 197 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREK 272
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
281-322 |
2.60e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 61.36 E-value: 2.60e-12
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1608193077 281 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 322
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
322-396 |
3.05e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 62.40 E-value: 3.05e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608193077 322 DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 396
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
259-398 |
1.32e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 67.71 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 259 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQG 338
Cdd:COG3914 55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALG 126
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 339 KAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:COG3914 127 RLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
196-355 |
9.27e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 9.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 196 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektlg 275
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 276 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKvlgkfHPDVakqLSNLALLCQNQGKAEEVEYYYRRALEIYA 355
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE-----HPEA---YLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
246-398 |
1.74e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 1.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 246 LALVYRDQNKYKDAAHLLNDALairektlgKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAK 325
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608193077 326 QLSNLALLCQNQGKAEEVEYYYRRALEIYatrlgPDDPNVAktkNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAY---LRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
245-400 |
6.50e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 6.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 245 ILALVYRDQNKYKDAAHLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVA 324
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608193077 325 KQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 400
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA 144
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
280-417 |
9.22e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 9.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 280 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYatrlg 359
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1608193077 360 PDDPNVAktkNNLASCYLKQGKYQDAETLYKEILtrAHEKEFGSVNARLERSVWQAGD 417
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKAL--KLDPEHPEAYLRLARAYRALGR 121
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
196-390 |
1.11e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 59.27 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 196 ARLRTlhNLVIQYASQGRYEvavplckQALEDLEKTSGHDhPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektlg 275
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLE-------VAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 276 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvlGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIya 355
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 1608193077 356 trlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYK 390
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
195-355 |
1.80e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.86 E-value: 1.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIRektl 274
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALEL--------DPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 gkdhPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 354
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
.
gi 1608193077 355 A 355
Cdd:COG0457 217 A 217
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
239-279 |
2.27e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 52.89 E-value: 2.27e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1608193077 239 VATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHP 279
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
249-358 |
2.45e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 249 VYRDQNKYKDAAHLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLcKRALEIrekvlgkfHPDVAKQLS 328
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100 110
....*....|....*....|....*....|
gi 1608193077 329 NLALLCQNQGKAEEVEYYYRRALEIYATRL 358
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
291-393 |
2.95e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 291 LYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYyRRALEIyatrlgpdDPNVAKTKN 370
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 1608193077 371 NLASCYLKQGKYQDAETLYKEIL 393
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
234-396 |
3.37e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 234 HDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIre 313
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 314 kvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 393
Cdd:COG5010 84 ------DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
...
gi 1608193077 394 TRA 396
Cdd:COG5010 150 GTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
208-316 |
1.50e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.48 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 208 YASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYkDAAHLLNDALAIrektlgkdHPAVAATLNN 287
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRY-DEAIALEKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 1608193077 288 LAVLYGKRGKYKEAEPLCKRALEIREKVL 316
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
276-410 |
2.02e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 276 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkfhPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIya 355
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL-- 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1608193077 356 trlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA-HEKEFGSVNARLER 410
Cdd:COG4235 81 ------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEASIAE 130
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
195-353 |
7.02e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.27 E-value: 7.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektl 274
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608193077 275 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEI 353
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
203-390 |
7.89e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.38 E-value: 7.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 203 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIRektlgkdhPAVA 282
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 283 ATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkfhPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEiyatrLGPDD 362
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALE-----LDPND 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1608193077 363 P-------------NVAKTKNNL----ASCYLKQGKYQDAETLYK 390
Cdd:COG4785 175 PeralwlylaerklDPEKALALLledwATAYLLQGDTEEARELFK 219
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
203-323 |
9.80e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.31 E-value: 9.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 203 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLN---ILALVYRDQNKYKDAAHLLNDALAIREKTLGKDH 278
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVNlanDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1608193077 279 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 323
Cdd:NF040586 774 PDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
318-393 |
1.29e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.09 E-value: 1.29e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608193077 318 KFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 393
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQAL 69
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
242-485 |
2.47e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 242 MLNILALVYRDQNKYKDAAHLLNDALAIREktlgkDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREkvLGKFHP 321
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAEL-----EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAA--AAAALL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 322 DVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEkef 401
Cdd:COG3914 76 LLAALLELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD--- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 402 gSVNARLersvwqagdspsLLGEnkpIWMHAEEREESKDkrrdsapygeygSWYKACKVDsPTVNTTLRSLGALYRRQGK 481
Cdd:COG3914 145 -FAEAYL------------NLGE---ALRRLGRLEEAIA------------ALRRALELD-PDNAEALNNLGNALQDLGR 195
|
....
gi 1608193077 482 LEAA 485
Cdd:COG3914 196 LEEA 199
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
235-394 |
2.95e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.93 E-value: 2.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 235 DHPDVATMLNILALVYRDQNKYKDAAHLLNDALairektlgKDHPAVAATLNNLAVLYGKRgKYKEAEPLCKRALEIRek 314
Cdd:TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYQTVV--------KKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLA-- 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 315 vlgkfhPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlGPDDPNVaktKNNLASCYLKQGKYQDAETLYKEILT 394
Cdd:TIGR02917 834 ------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-----APEAAAI---RYHLALALLATGRKAEARKELDKLLN 899
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
223-373 |
3.78e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 3.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 223 QALEDLEKTSGHDHPDVATMLNiLALVYRDQNKYKDAAHLLNDALAIRektlgkdhPAVAATLNNLAVLYGKRGKYKEAE 302
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLL-LGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAE 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608193077 303 PLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEiyatrLGPDDPNVAKTKNNLA 373
Cdd:COG4235 72 ELLERALAL--------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA-----LLPADAPARLLEASIA 129
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
198-238 |
1.85e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 44.80 E-value: 1.85e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1608193077 198 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 238
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
195-352 |
5.48e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.99 E-value: 5.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIRektl 274
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALE--------LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD---- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 275 gkdhPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------VLGKFHPDVAKQL--SNLALLCQNQGKAEE 342
Cdd:COG4785 138 ----PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEE 213
|
170
....*....|
gi 1608193077 343 VEYYYRRALE 352
Cdd:COG4785 214 ARELFKLALA 223
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
294-395 |
1.74e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 294 KRGKYKEAEPLCKRALeirekvlgKFHPD---VAKQLSNLALLCQNQGKAEEVEYYYRRALEIYatrlgPDDPNVAKTKN 370
Cdd:COG1729 5 KAGDYDEAIAAFKAFL--------KRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALL 71
|
90 100
....*....|....*....|....*
gi 1608193077 371 NLASCYLKQGKYQDAETLYKEILTR 395
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELIKK 96
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
208-398 |
2.11e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.77 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 208 YASQGRYEVAVPLCKQALEdLEKTSGhdhpdvATMLniLALVYRDQNKYKDAAHLLNDALairektlgKDHPAVAATLNN 287
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALK-RAPSSQ------NAIK--LHRALLASGNTAEAVKTLEAWL--------KTHPNDAVLRTA 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 288 LAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQnQGKAEEVEYYYRRALEiyatrLGPDDPNVAK 367
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYL-ELKDPRALEYAERALK-----LAPNIPAILD 841
|
170 180 190
....*....|....*....|....*....|.
gi 1608193077 368 TknnLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:TIGR02917 842 T---LGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
195-311 |
3.51e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAirektL 274
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 1608193077 275 GKDHPAVaatLNNLAVLYGKRGKYKEAEPLCKRALEI 311
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
222-396 |
3.77e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.00 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 222 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLgkdhPAVAAtlnnLAVLYGKRGKYKEA 301
Cdd:TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL----YAKLG----LAQLALAENRFDEA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 302 EPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGK 381
Cdd:TIGR02917 179 RALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL--------RPNNIAVLLALATILIEAGE 242
|
170
....*....|....*
gi 1608193077 382 YQDAETLYKEILTRA 396
Cdd:TIGR02917 243 FEEAEKHADALLKKA 257
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
195-415 |
4.64e-05 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 45.76 E-value: 4.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKtsgHDHPDVATM-LNILALVYRDQNKYKDAAHLLNDALAIREKT 273
Cdd:pfam17874 37 LARGLATFVLGEAYLCLGDLDAALQAMREAEALARR---ADSPHVTLWaLLQQGEILRAQGRLHQALETYQQALQLARDH 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 274 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvLGKFHPDVAKQ-LSNLALLCQNQGKAEEVEYYYRRALE 352
Cdd:pfam17874 114 GLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQL----GRQWEPDAAVDaYVLLARIALAQGELEEALTLLRRAEL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 353 IYA-TRLGPDDPNVAKT------------------------------------KNNLASCYLKQGKYQDAETLYKEILTR 395
Cdd:pfam17874 190 LARqSFFHVDWLANAERvrvrlwlargdlraavrwlraaeppsdadnhflereLRNLARVLLALGRFDDALSLLERLQNL 269
|
250 260
....*....|....*....|
gi 1608193077 396 AheKEFGSVNARLERSVWQA 415
Cdd:pfam17874 270 A--EQLGRVRSLIENLILQA 287
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
282-314 |
5.19e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.48 E-value: 5.19e-05
10 20 30
....*....|....*....|....*....|...
gi 1608193077 282 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 314
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
203-408 |
5.59e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 203 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDhPDVATMLNILALVYRDQNKykdaahlLNDALAIREKtLGKDHPAVA 282
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQ-------FDKALAAAKK-LEKKQPDNA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 283 ATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIyatrlgpdD 362
Cdd:TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--------D 529
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1608193077 363 PNVAKTKNNLASCYLKQGKYQDAetlyKEILTRAHEKEFGSVNARL 408
Cdd:TIGR02917 530 PKNLRAILALAGLYLRTGNEEEA----VAWLEKAAELNPQEIEPAL 571
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
195-312 |
6.56e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.11 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektl 274
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQ--------DPDYLPALPRLAELYEKLGDPEEALELLRKALEL----- 241
|
90 100 110
....*....|....*....|....*....|....*...
gi 1608193077 275 gkdHPAVAAtLNNLAVLYGKRGKYKEAEPLCKRALEIR 312
Cdd:COG2956 242 ---DPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
195-311 |
6.80e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLektsghdhPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektl 274
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL----- 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 1608193077 275 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 311
Cdd:COG4235 81 ---DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
291-498 |
2.36e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.52 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 291 LYgKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEV---------------------EY---- 345
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreldedtlerqrrvlglgedhPHtlmt 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 346 ------------YYRRALEI-------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRaHEKEFGSVNA 406
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDHP 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 407 RLERSVWQAGDSPSLLGEnkpiwmHAEEREESKDKRRDsapYGEygswyKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 486
Cdd:NF040586 560 RTLLSANNLARDLRELGR------YAEALDLLEEALER---YRE-----VLGGPDHPDTLRAAKSLAVALRRAGRLEEAL 625
|
250
....*....|...
gi 1608193077 487 TL-EDCASRSRKQ 498
Cdd:NF040586 626 ELaEDTYERYRRR 638
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
282-314 |
2.53e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.53e-04
10 20 30
....*....|....*....|....*....|...
gi 1608193077 282 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 314
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
323-364 |
2.74e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 38.64 E-value: 2.74e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1608193077 323 VAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 364
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
246-311 |
3.96e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 3.96e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608193077 246 LALVYRDQNKYKDAAHLLNDALAirektLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 311
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
332-417 |
4.41e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 4.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 332 LLCQNQGKAEEVEYYYRRALEIyatrlgpdDPNVAKTKNNLASCYLKQGKYQDAETLYKEILtrAHEKEFGSVNARLERS 411
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYYEKAL--ALSPDNPNAYSNLAAL 131
|
....*.
gi 1608193077 412 VWQAGD 417
Cdd:COG5010 132 LLSLGQ 137
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
284-318 |
6.15e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.52 E-value: 6.15e-04
10 20 30
....*....|....*....|....*....|....*
gi 1608193077 284 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 318
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
250-374 |
1.42e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 250 YRDQNKYKDAAHLLNDALAirektLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKvlgkfHPDVAKQLSN 329
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD-----SPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1608193077 330 LALLCQNQGKAEEVEYYYRRALEIYatrlgPDDPNVAKTKNNLAS 374
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
26-132 |
1.49e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.21 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 26 QGLETLRGEHRALLAPLASHEAGEAEpgSQERCLLLRRSLEAIELGLGEAQVILA-LSSHLGAVESEKQKLRAQVRRLVQ 104
Cdd:pfam19220 62 AAYGKLRRELAGLTRRLSAAEGELEE--LVARLAKLEAALREAEAAKEELRIELRdKTAQAEALERQLAAETEQNRALEE 139
|
90 100
....*....|....*....|....*...
gi 1608193077 105 ENQWLREELAGTQQKLQRSEQAVAQLEE 132
Cdd:pfam19220 140 ENKALREEAQAAEKALQRAEGELATARE 167
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
365-402 |
3.84e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.56 E-value: 3.84e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1608193077 365 VAKTKNNLASCYLKQGKYQDAETLYKEILTRaHEKEFG 402
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG 37
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
366-398 |
4.21e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.21e-03
10 20 30
....*....|....*....|....*....|...
gi 1608193077 366 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
366-398 |
5.43e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 5.43e-03
10 20 30
....*....|....*....|....*....|...
gi 1608193077 366 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 398
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
195-274 |
6.44e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 195 PARLRTLHNLVIQYASQGRYEVAVPLcKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTL 274
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALK--------LDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
212-419 |
6.53e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.68 E-value: 6.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 212 GRYEVAVPLCKQALEDLEKTSGhDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektlgkdHPAVAATLNNLAVL 291
Cdd:TIGR02917 574 AQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 292 YGKRGKYKEAEPLCKRALEIrekvlgkfHPDVAKQLSNLALLCQNQGKAEEveyyyrrALEIYAtRLGPDDPNVAKTKNN 371
Cdd:TIGR02917 645 YAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTES-------AKKIAK-SLQKQHPKAALGFEL 708
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1608193077 372 LASCYLKQGKYQDAETLYKEiltrAHEKEFGSVNA-RLERSVWQAGDSP 419
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRK----ALKRAPSSQNAiKLHRALLASGNTA 753
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
203-283 |
7.99e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.52 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 203 NLVIQYASQGRYEVAvpLCKQALEDLE------KTSGHDHPDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGK 276
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRrllgedLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 1608193077 277 DHPAVAA 283
Cdd:NF040586 814 DHPDTVA 820
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
237-356 |
8.18e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.20 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 237 PDVATMLNILALVYRDQNKYKDAAHLLNDALAIREKTLGKdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvl 316
Cdd:TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM-YMNVLPLINKALALFQWKQDFIEAENLCEKALII----- 537
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1608193077 317 gkfHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 356
Cdd:TIGR00990 538 ---DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
222-396 |
8.88e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.30 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 222 KQALEDLEKTSGHDhPDVATMLNILALVYRDQNKYKDAAHLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEA 301
Cdd:TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608193077 302 EPLCKRALEIREKvlgkfHPDVAKQLSNLALLcqnQGKAEEVEYYYRRALEIYAT-----RLG----------------- 359
Cdd:TIGR02917 689 KKIAKSLQKQHPK-----AALGFELEGDLYLR---QKDYPAAIQAYRKALKRAPSsqnaiKLHrallasgntaeavktle 760
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1608193077 360 ---PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 396
Cdd:TIGR02917 761 awlKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800
|
|
| |
