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Conserved domains on  [gi|1622996152|ref|NP_001356826|]
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PGC-1 and ERR-induced regulator in muscle protein 1 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
47-518 3.20e-12

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 70.74  E-value: 3.20e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   47 DSSGSSPPRAPPLPtgqlaaggrsRRGCEEEDVATQQPVSRSQGEPVLALGTGQQTPSTSARAEAPpsLGPGASPPSQFS 126
Cdd:PHA03247  2546 DDAGDPPPPLPPAA----------PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAP--VDDRGDPRGPAP 2613
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  127 SCPGPASSgdqmqrllQGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGgghTGASASAQTGS 206
Cdd:PHA03247  2614 PSPLPPDT--------HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG---RAAQASSPPQR 2682
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  207 PLLPAASPETAKLMAKAGQeelgPGPAGAPEPGPRSPVQedrpgpglglSTPVPVTEQGTDQIRTPRRAKLHTVSTTVWE 286
Cdd:PHA03247  2683 PRRRAARPTVGSLTSLADP----PPPPPTPEPAPHALVS----------ATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  287 ALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASK 366
Cdd:PHA03247  2749 ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  367 PQSDTAVSTPASEPQSSVALSTPiskpqLDTDVAVSTPASKHGldvalPTAGPVAKLEVASSPPVSE----AVPRMTESS 442
Cdd:PHA03247  2829 PPPTSAQPTAPPPPPGPPPPSLP-----LGGSVAPGGDVRRRP-----PSRSPAAKPAAPARPPVRRlarpAVSRSTESF 2898
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  443 GLVSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEP---------------SAGAPGCCSGAPALGLTQVPRKKKVRFS 507
Cdd:PHA03247  2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPpprpqpplapttdpaGAGEPSGAVPQPWLGALVPGRVAVPRFR 2978
                          490
                   ....*....|.
gi 1622996152  508 VAGPSPNKPGS 518
Cdd:PHA03247  2979 VPQPAPSREAP 2989
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
47-518 3.20e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 70.74  E-value: 3.20e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   47 DSSGSSPPRAPPLPtgqlaaggrsRRGCEEEDVATQQPVSRSQGEPVLALGTGQQTPSTSARAEAPpsLGPGASPPSQFS 126
Cdd:PHA03247  2546 DDAGDPPPPLPPAA----------PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAP--VDDRGDPRGPAP 2613
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  127 SCPGPASSgdqmqrllQGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGgghTGASASAQTGS 206
Cdd:PHA03247  2614 PSPLPPDT--------HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG---RAAQASSPPQR 2682
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  207 PLLPAASPETAKLMAKAGQeelgPGPAGAPEPGPRSPVQedrpgpglglSTPVPVTEQGTDQIRTPRRAKLHTVSTTVWE 286
Cdd:PHA03247  2683 PRRRAARPTVGSLTSLADP----PPPPPTPEPAPHALVS----------ATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  287 ALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASK 366
Cdd:PHA03247  2749 ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  367 PQSDTAVSTPASEPQSSVALSTPiskpqLDTDVAVSTPASKHGldvalPTAGPVAKLEVASSPPVSE----AVPRMTESS 442
Cdd:PHA03247  2829 PPPTSAQPTAPPPPPGPPPPSLP-----LGGSVAPGGDVRRRP-----PSRSPAAKPAAPARPPVRRlarpAVSRSTESF 2898
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  443 GLVSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEP---------------SAGAPGCCSGAPALGLTQVPRKKKVRFS 507
Cdd:PHA03247  2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPpprpqpplapttdpaGAGEPSGAVPQPWLGALVPGRVAVPRFR 2978
                          490
                   ....*....|.
gi 1622996152  508 VAGPSPNKPGS 518
Cdd:PHA03247  2979 VPQPAPSREAP 2989
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
271-565 6.45e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.02  E-value: 6.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 271 TPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPAS-EPQPDTDMAVSTPA 349
Cdd:pfam17823  91 TPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASaAPRAAIAAASAPHA 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 350 SEPQPdrDMAVSIPASKPQSDTAVSTPASEPQSSVALSTPISkPQLDTDVAVSTPASKHGLdVALPTAGPVAKLEVASSP 429
Cdd:pfam17823 171 ASPAP--RTAASSTTAASSTTAASSAPTTAASSAPATLTPAR-GISTAATATGHPAAGTAL-AAVGNSSPAAGTVTAAVG 246
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 430 PVSEA-VPRMTESSGLVSTPvprADAAGLAWPPTRRAGPDvvemEAVVSEPSAGAPGCCSGAPALGLT-QVPRKKKVRFS 507
Cdd:pfam17823 247 TVTPAaLATLAAAAGTVASA---AGTINMGDPHARRLSPA----KHMPSDTMARNPAAPMGAQAQGPIiQVSTDQPVHNT 319
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996152 508 VAGPSPNKPGSGQASARP-------SAPQTATGAHGGPGAWEAVAVGPRPHQPRILKHLPRPPPS 565
Cdd:pfam17823 320 AGEPTPSPSNTTLEPNTPksvastnLAVVTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPS 384
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
47-518 3.20e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 70.74  E-value: 3.20e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   47 DSSGSSPPRAPPLPtgqlaaggrsRRGCEEEDVATQQPVSRSQGEPVLALGTGQQTPSTSARAEAPpsLGPGASPPSQFS 126
Cdd:PHA03247  2546 DDAGDPPPPLPPAA----------PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAP--VDDRGDPRGPAP 2613
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  127 SCPGPASSgdqmqrllQGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGgghTGASASAQTGS 206
Cdd:PHA03247  2614 PSPLPPDT--------HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG---RAAQASSPPQR 2682
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  207 PLLPAASPETAKLMAKAGQeelgPGPAGAPEPGPRSPVQedrpgpglglSTPVPVTEQGTDQIRTPRRAKLHTVSTTVWE 286
Cdd:PHA03247  2683 PRRRAARPTVGSLTSLADP----PPPPPTPEPAPHALVS----------ATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  287 ALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASK 366
Cdd:PHA03247  2749 ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  367 PQSDTAVSTPASEPQSSVALSTPiskpqLDTDVAVSTPASKHGldvalPTAGPVAKLEVASSPPVSE----AVPRMTESS 442
Cdd:PHA03247  2829 PPPTSAQPTAPPPPPGPPPPSLP-----LGGSVAPGGDVRRRP-----PSRSPAAKPAAPARPPVRRlarpAVSRSTESF 2898
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  443 GLVSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEP---------------SAGAPGCCSGAPALGLTQVPRKKKVRFS 507
Cdd:PHA03247  2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPpprpqpplapttdpaGAGEPSGAVPQPWLGALVPGRVAVPRFR 2978
                          490
                   ....*....|.
gi 1622996152  508 VAGPSPNKPGS 518
Cdd:PHA03247  2979 VPQPAPSREAP 2989
PHA03247 PHA03247
large tegument protein UL36; Provisional
103-580 3.19e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 67.66  E-value: 3.19e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  103 PSTSARAEAPPSLGPGASPPSQFSSCP-GPASSGDQMQRLLQGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPS 181
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPsEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  182 RkkRRAVGAKGGGHTGASASAQTGSPllpAASPETAKLMAKAGQEELGPGPAGAPEpGPRSPVQEDRPGPGLGLSTPVPv 261
Cdd:PHA03247  2631 P--SPAANEPDPHPPPTVPPPERPRD---DPAPGRVSRPRRARRLGRAAQASSPPQ-RPRRRAARPTVGSLTSLADPPP- 2703
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  262 teqgtdQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEPQPDrdmAVSTPASEPQSDRDMAVSTPASEPQPDT 341
Cdd:PHA03247  2704 ------PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA---GPATPGGPARPARPPTTAGPPAPAPPAA 2774
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  342 DMAVSTPASEPQPDRDMAVSIPASKPQSDTA-----VSTPASEPQSSVALSTPISKPQLDTDVAVSTP----ASKHGLDV 412
Cdd:PHA03247  2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPAdppaaVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPpgppPPSLPLGG 2854
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  413 ALPTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTPVPRADAAgLAWPPTRRAGPDVVEMEAvvsEPSAGAPGCCSGAPA 492
Cdd:PHA03247  2855 SVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES-FALPPDQPERPPQPQAPP---PPQPQPQPPPPPQPQ 2930
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  493 LGLTQVPRKKkvrfSVAGPSPNKPGSGQASARPSAPQTATGAHGGPGAWEAVAVGPRPHQPRILKHLPRPPPSAVTRVgp 572
Cdd:PHA03247  2931 PPPPPPPRPQ----PPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRV-- 3004

                   ....*...
gi 1622996152  573 gSSFAVTL 580
Cdd:PHA03247  3005 -SSWASSL 3011
PHA03247 PHA03247
large tegument protein UL36; Provisional
229-731 4.42e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.80  E-value: 4.42e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  229 GPGPAGAPEPGPRSPVQEDRPGPGLGLSTPV--PVTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASE 306
Cdd:PHA03247  2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPVgePVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPA 2574
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  307 PQPDRDMAVS---TPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSS 383
Cdd:PHA03247  2575 PRPSEPAVTSrarRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  384 VALSTPISKPQLDTDVA----VSTPASKHGLDVALPTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTPVPRADAAGLAW 459
Cdd:PHA03247  2655 DPAPGRVSRPRRARRLGraaqASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  460 PPTRRAGPDVVEMEAV-VSEPSAGAPGCCSGAPALGLTQVPRKKKVRFSVAGPSPNKPGSGQASARPSAPQTATGAHGGP 538
Cdd:PHA03247  2735 LPAAPAPPAVPAGPATpGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  539 GAWEAVAVGPRPHQPrilkhlprPPPSAVTRVGPGSSFAVTLPEAYEFFFCDTIEENEEAEAAAAGQDPAGVQWPDMCEF 618
Cdd:PHA03247  2815 AAALPPAASPAGPLP--------PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  619 FFPDVgaqrsRRRGSPEPLPRADPVPAPIPGDPVPISIPEVYEHFFFGEDRLEGVLGPAVPLPLQALEPPRSASEGAGPG 698
Cdd:PHA03247  2887 ARPAV-----SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961
                          490       500       510
                   ....*....|....*....|....*....|...
gi 1622996152  699 TPLKPAVVERLHLALRRAGELRGPVPSFAFSQN 731
Cdd:PHA03247  2962 PWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
19-478 3.66e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 56.92  E-value: 3.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  19 SATADECGLLQ------AGLASGDELLSSDIDQGDSSGSSPPRAPPLPTGQLAAGGRSRRGCEEEDVATQQPVSRSQGEP 92
Cdd:PRK07764  366 SASDDERGLLArlerleRRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  93 VLALGTGQQTPSTSARAEAPPSLGPGASPPSQFSSCPGPASSGdqmqrllqgpaprppgEPPGSPKSPGHSTGSQRPPDS 172
Cdd:PRK07764  446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP----------------APAAAPAAPAAPAAPAGADDA 509
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 173 PGAPPRSPS-----RKKRRAV------GAKGGGHTGASASAQTGSPLLPA--ASPETAKLMAKAGQEELG---------- 229
Cdd:PRK07764  510 ATLRERWPEilaavPKRSRKTwaillpEATVLGVRGDTLVLGFSTGGLARrfASPGNAEVLVTALAEELGgdwqveavvg 589
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 230 PGPAGAPEPGPRSPVQEDRPGPGlglstPVPVTEQGTDQIRTPRRAKLHTVSttvwealpdvSRAKSDMAVSTPASEPQP 309
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEA-----ARPAAPAAPAAPAAPAPAGAAAAP----------AEASAAPAPGVAAPEHHP 654
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 310 DRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSvalstp 389
Cdd:PRK07764  655 KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA------ 728
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 390 iSKPQLDTDVAVSTPASKHGLDVALPTAGPVAKLEVASSPPVSEAVPRMTESSGlvstPVPRADAAGLAWPPTRRAGPDV 469
Cdd:PRK07764  729 -SAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE----EEEMAEDDAPSMDDEDRRDAEE 803

                  ....*....
gi 1622996152 470 VEMEAVVSE 478
Cdd:PRK07764  804 VAMELLEEE 812
PHA03247 PHA03247
large tegument protein UL36; Provisional
44-429 1.43e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   44 DQGDSSGSSPPRAPPLPTGQL---AAGGRSRRGCEEEDVATQQP-------------VSRSQGEPVLALGTGQQTPSTSA 107
Cdd:PHA03247  2604 DRGDPRGPAPPSPLPPDTHAPdppPPSPSPAANEPDPHPPPTVPpperprddpapgrVSRPRRARRLGRAAQASSPPQRP 2683
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  108 RAEA---------------PPSLGPGASPPSQFSSCPGPASSGDQMQRLLQGPAPRPPGEPPGSPKSPGHSTGSQRPPDS 172
Cdd:PHA03247  2684 RRRAarptvgsltsladppPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  173 PGAPPRSPSRKKRRAVGAKGGGHTGASASAQTGS-PLLPAASPETAKLMAKAGQEELGPGPAGaPEPGPRSPVQEDRPGP 251
Cdd:PHA03247  2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESlPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPTAPPPP 2842
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  252 GLGLSTPVP----VTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSR---AKSDMAVSTPASEPQPDRDMAVSTPASEPQS 324
Cdd:PHA03247  2843 PGPPPPSLPlggsVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARpavSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  325 DRDMAVSTPASEPQPDTDMAVS-TPASEPQPDRDMAVSIP---ASKPQSDTAVSTPASEPQSSVALSTPISKPQLDTDV- 399
Cdd:PHA03247  2923 PPPPPQPQPPPPPPPRPQPPLApTTDPAGAGEPSGAVPQPwlgALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLs 3002
                          410       420       430
                   ....*....|....*....|....*....|
gi 1622996152  400 AVSTPASKHGLDVAlPTAGPVAKLEVASSP 429
Cdd:PHA03247  3003 RVSSWASSLALHEE-TDPPPVSLKQTLWPP 3031
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
65-467 3.93e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.55  E-value: 3.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   65 AAGGRSRRGCEEEDVATQQPVSRSQGEPVLALGTGQQTPSTSARAEAPPSLGPGASPPSQFSSCPGPASSGDQMQRL--L 142
Cdd:PHA03307    16 EGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLstL 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  143 QGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGGGHTGASASAQTGSPLLPA--ASPETAKLM 220
Cdd:PHA03307    96 APASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASdaASSRQAALP 175
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  221 AKAGQEELGPGPAGAPEPGPRSPVQEDRPGPglGLSTPVPVTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAV 300
Cdd:PHA03307   176 LSSPEETARAPSSPPAEPPPSTPPAAASPRP--PRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  301 STPASEPQPDRDMAVSTPASEPQSDRDMA--VSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPAS 378
Cdd:PHA03307   254 ECPLPRPAPITLPTRIWEASGWNGPSSRPgpASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  379 EPQSSVALSTPIS-----KPQLDTDVAVSTPASKHGLDVALPTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTPVPRAD 453
Cdd:PHA03307   334 ESSRGAAVSPGPSpsrspSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
                          410
                   ....*....|....
gi 1622996152  454 AAGLAWPPTRRAGP 467
Cdd:PHA03307   414 PSPLDAGAASGAFY 427
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
187-468 6.10e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.85  E-value: 6.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 187 AVGAKGGGHTGASASAQTGSPLLPAASPETAKLMAKAGQEELGPGPAGAPEPGPRSPVQEDRPGPGLGLSTPVPVTEQGT 266
Cdd:PRK07003  361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGD 440
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 267 DQIRTPrraklhtVSTTVWEALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVS 346
Cdd:PRK07003  441 DAADGD-------APVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 347 TPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSVALSTpiskpQLDTDVAVSTPASKHGLDVALPTAGPVAKLEVA 426
Cdd:PRK07003  514 AAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDV-----LRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPA 588
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1622996152 427 SSPPVSE-----AVPRMTESSGLVSTPVPRADAAGLAWPPTRRAGPD 468
Cdd:PRK07003  589 APRVAVQvptprARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPD 635
PHA03247 PHA03247
large tegument protein UL36; Provisional
47-354 1.63e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 1.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   47 DSSGSSPPRAPPLPTGQLAAGGRSRRGCEEEDVATQQPVSRSQGEPVLALGTGQQTPSTSARAEAPPSlgPGASPPSQFS 126
Cdd:PHA03247  2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP--PPGPPPPSLP 2851
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  127 SCPGPASSGDQMQRLLQGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPSRKKRRAvgakggghtgASASAQTGS 206
Cdd:PHA03247  2852 LGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ----------APPPPQPQP 2921
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  207 PLLPAASPETAKLMAKAGQEELGPGPAGAPEPGPRSPVqedrPGPGLGLSTP--VPVTEQGTDQIRTPRRAKLHTVSTTV 284
Cdd:PHA03247  2922 QPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAV----PQPWLGALVPgrVAVPRFRVPQPAPSREAPASSTPPLT 2997
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996152  285 WEALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVST-----PASEPQPDTDMAVSTPASEPQP 354
Cdd:PHA03247  2998 GHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSdsersDLEALDPLPPEPHDPFAHEPDP 3072
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
93-540 3.54e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 3.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  93 VLALGTGQQTPSTSARAEAPPSLGPGASPPSQfsscPGPASSGdqmqrllqgpaprppgeppgspkspghSTGSQRPPDS 172
Cdd:PRK07764  362 MLLPSASDDERGLLARLERLERRLGVAGGAGA----PAAAAPS---------------------------AAAAAPAAAP 410
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 173 PGAPPRSPSRKKRRAVGAKGGGHTGASASAQTGSPLLPAASPETAKLMAKAGQEELGPGPAGAPEPGPRSPVQEDRPGPG 252
Cdd:PRK07764  411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 253 LGL--STPVPVTEQGTDQIRTPRRAklhtvSTTVWEALPDVSRaKSDMAVSTPASEPQPDRD---MAVSTPA-----SEP 322
Cdd:PRK07764  491 AAApaAPAAPAAPAGADDAATLRER-----WPEILAAVPKRSR-KTWAILLPEATVLGVRGDtlvLGFSTGGlarrfASP 564
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 323 QSDRDMA----------------VSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSVAL 386
Cdd:PRK07764  565 GNAEVLVtalaeelggdwqveavVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPA 644
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 387 STPISKPQLDTDVAVSTPASKHG-----LDVALPTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTPVPRADAAGLAWPP 461
Cdd:PRK07764  645 PGVAAPEHHPKHVAVPDASDGGDgwpakAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996152 462 TRRAGPDVVEMEAVVSEPSAGAPGCCSGAPALGLTQVPRKKKVRFSVAGPSPNKPGSGQASARPSAPQTATGAHGGPGA 540
Cdd:PRK07764  725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEE 803
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
289-528 5.61e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.77  E-value: 5.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 289 PDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQ 368
Cdd:PRK07003  383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 369 SDTAVSTPASEPQSSVALSTPISKPQLDTDVAVSTPASKHGLDVALPTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTP 448
Cdd:PRK07003  463 CDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAP 542
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 449 VPRADAAGLAWPPTRRAG----PDVVEMEAVVSEPSAGAPGCCSGAPALGLTQVPRKKKVRFSVAGPSPNKPGSGQASAR 524
Cdd:PRK07003  543 AARAGGAAAALDVLRNAGmrvsSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAES 622

                  ....
gi 1622996152 525 PSAP 528
Cdd:PRK07003  623 RGAP 626
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
260-481 1.14e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 45.81  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 260 PVTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEPQPdrdmavsTPASEPqsdrdmavsTPASEPQP 339
Cdd:PRK14960  371 PVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEP-------EPEPEP---------EPEPEPEP 434
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 340 DTDmavstPASEPQPDRDMAVSipasKPQSDTAVSTPASEPQSSVALST----PISKPQLdTDVAVSTPASKHGLDVALp 415
Cdd:PRK14960  435 EPE-----PEPEPQPNQDLMVF----DPNHHELIGLESAVVQETVSVLEedfiPVPEQKL-VQVQAETQVKQIEPEPAS- 503
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 416 TAGPVAKLEVASSppvSEAVPRMTESSGLVSTPV----PRADAaglawpptrragpDVVEMEAVVSEPSA 481
Cdd:PRK14960  504 TAEPIGLFEASSA---EFSLAQDTSAYDLVSEPVieqqSLVQA-------------EIVETVAVVKEPNA 557
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
248-458 5.12e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 5.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 248 RPGPGLGLSTPVPVTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEP-QPDRDMAVSTPASEPQSDR 326
Cdd:PRK12323  364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPaRRSPAPEALAAARQASARG 443
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 327 DMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSVALSTPISKPQLDTDVAVSTPAS 406
Cdd:PRK12323  444 PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1622996152 407 KHGLDVAlpTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTPV-PRADAAGLA 458
Cdd:PRK12323  524 ESIPDPA--TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRpPRASASGLP 574
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
271-565 6.45e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.02  E-value: 6.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 271 TPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPAS-EPQPDTDMAVSTPA 349
Cdd:pfam17823  91 TPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASaAPRAAIAAASAPHA 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 350 SEPQPdrDMAVSIPASKPQSDTAVSTPASEPQSSVALSTPISkPQLDTDVAVSTPASKHGLdVALPTAGPVAKLEVASSP 429
Cdd:pfam17823 171 ASPAP--RTAASSTTAASSTTAASSAPTTAASSAPATLTPAR-GISTAATATGHPAAGTAL-AAVGNSSPAAGTVTAAVG 246
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 430 PVSEA-VPRMTESSGLVSTPvprADAAGLAWPPTRRAGPDvvemEAVVSEPSAGAPGCCSGAPALGLT-QVPRKKKVRFS 507
Cdd:pfam17823 247 TVTPAaLATLAAAAGTVASA---AGTINMGDPHARRLSPA----KHMPSDTMARNPAAPMGAQAQGPIiQVSTDQPVHNT 319
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996152 508 VAGPSPNKPGSGQASARP-------SAPQTATGAHGGPGAWEAVAVGPRPHQPRILKHLPRPPPS 565
Cdd:pfam17823 320 AGEPTPSPSNTTLEPNTPksvastnLAVVTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPS 384
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
44-383 8.92e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 8.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152   44 DQGDSSGSSPPRAPPLPTGQLAAGGRSRRGCEEEDVATQQPVSRSQGEPVlalGTGQQTPSTSARAEAPPSLGPGASPPS 123
Cdd:PHA03307    81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSP---APDLSEMLRPVGSPGPPPAASPPAAGA 157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  124 QFSSCPGPASSGDQMQRLLQGPAPRPPGEPPGSPKSPGhstgSQRPPDSPGAPPR--SPSRKKRRAVGAKGGGHTGASAS 201
Cdd:PHA03307   158 SPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPP----STPPAAASPRPPRrsSPISASASSPAPAPGRSAADDAG 233
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  202 AQTGSpllpaaSPETAKLMAKAGQEELGPGPAGAPEPGPRSPVQEDRPGPglGLSTPVPVTEQGTDQIRTPRRAklhtvs 281
Cdd:PHA03307   234 ASSSD------SSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNG--PSSRPGPASSSSSPRERSPSPS------ 299
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  282 ttvwealPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASepqpdtdmavstPASEPQPDRDMAVS 361
Cdd:PHA03307   300 -------PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPS------------PSRSPSPSRPPPPA 360
                          330       340
                   ....*....|....*....|..
gi 1622996152  362 IPASKPQSDTAVSTPASEPQSS 383
Cdd:PHA03307   361 DPSSPRKRPRPSRAPSSPAASA 382
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
208-659 1.34e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 208 LLPAASPETAKLMAKAGQEE--LGPGPAGAPEPGPRSPVQEDRPGPGLGLSTPVPVTEQGTdqiRTPRRAKLHTVSttvw 285
Cdd:PRK07764  363 LLPSASDDERGLLARLERLErrLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP---APAAAPQPAPAP---- 435
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 286 EALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPAS 365
Cdd:PRK07764  436 APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 366 KPQSDTAVS------TPASEPQSSVAlstpiskpQLDTDVAV---STPASKHGL----------DVALPTAGPVAKLEVA 426
Cdd:PRK07764  516 WPEILAAVPkrsrktWAILLPEATVL--------GVRGDTLVlgfSTGGLARRFaspgnaevlvTALAEELGGDWQVEAV 587
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 427 SSPPVSEAVP-RMTESSGLVSTPVPRADAAGLAWPPTRRAGPdvvemeavvsEPSAGAPGCCSGAPALGLTQVPRKKKvr 505
Cdd:PRK07764  588 VGPAPGAAGGeGPPAPASSGPPEEAARPAAPAAPAAPAAPAP----------AGAAAAPAEASAAPAPGVAAPEHHPK-- 655
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 506 fSVAGPSPNKPGSGQASARPSAPQTATGAHGGPGAWEAVAVGPRPHqprilkhlPRPPPSAVTRVGPGSSFAVTLPEAye 585
Cdd:PRK07764  656 -HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ--------PAPAPAATPPAGQADDPAAQPPQA-- 724
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622996152 586 fffcdTIEENEEAEAAAAGQDPAGVQWPDMCEFFFPDVGAQRSRRRGSPEPLPRADPVPAPIPGDPVPISIPEV 659
Cdd:PRK07764  725 -----AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
334-481 1.73e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.77  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 334 ASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSVALSTPISKpqldtDVAVSTPASKHGLDVA 413
Cdd:PRK07994  363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ-----LLAARQQLQRAQGATK 437
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996152 414 LPTAGPVAkleVASSPPVSEAVPRMTESSglvSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEPSA 481
Cdd:PRK07994  438 AKKSEPAA---ASRARPVNSALERLASVR---PAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
160-395 3.00e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 160 PGHSTGSQRPPdSPGAPPRSPSRKKRRAvgakggghTGASASAQTGSPLLPAASPETAKLMAKAGQEELGPGPAGAPEPG 239
Cdd:PRK12323  365 PGQSGGGAGPA-TAAAAPVAQPAPAAAA--------PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 240 PRSPVQEDRPGPGLGLSTPVPVTeqgtdqIRTPRRAKLHTVSTTVWEALPDVSRAKSdmAVSTPASEPQPDRDMAVSTPA 319
Cdd:PRK12323  436 ARQASARGPGGAPAPAPAPAAAP------AAAARPAAAGPRPVAAAAAAAPARAAPA--AAPAPADDDPPPWEELPPEFA 507
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996152 320 SEPQSDRDMAVSTPASEPQPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVS-TPASEPQSSVALSTPISKPQL 395
Cdd:PRK12323  508 SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVApRPPRASASGLPDMFDGDWPAL 584
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
364-582 3.11e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 3.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 364 ASKPQSDTAVSTPASEPQSSVALSTPISKPQLDTDVAVSTPASKHGLDVALPTAGPVAKLEVASSPPVSEAVPRMTESSG 443
Cdd:PRK12323  362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 444 LVSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEPSAGAPGCCSGAPALGLTQVPRKKKVRFSVAGPSPNKPGSGQASA 523
Cdd:PRK12323  442 RGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622996152 524 RPSA---PQTATGAHGGPGAWEAVAVGPRPHQPRILKHLPRPPPSAVTRVGPGSSFAVTLPE 582
Cdd:PRK12323  522 VAESipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
PHA03247 PHA03247
large tegument protein UL36; Provisional
150-565 5.65e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 5.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  150 PGEPPGSPKSPGhSTGSQRPPDSPGAPPRSPSRKkrRAVGAKGGGHTGASASAQTGSPLLPAASPETAKlmakagqEELG 229
Cdd:PHA03247  2499 GGGGPPDPDAPP-APSRLAPAILPDEPVGEPVHP--RMLTWIRGLEELASDDAGDPPPPLPPAAPPAAP-------DRSV 2568
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  230 PGPAGAPEP-GPRSPVQEDRPGPGLGLSTPVPVTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEPQ 308
Cdd:PHA03247  2569 PPPRPAPRPsEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  309 PDRDMAVSTP--ASEPQSDRDMAVSTPASEP--------QPDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPAS 378
Cdd:PHA03247  2649 PERPRDDPAPgrVSRPRRARRLGRAAQASSPpqrprrraARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  379 EPQSSVALSTPISKPQLD------TDVAVSTPASKHGLDVALPTAGPVAKLEVASSPPVSEAVPRMTESSGLVSTPVPRA 452
Cdd:PHA03247  2729 RQASPALPAAPAPPAVPAgpatpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152  453 ---DAAGLAWPPTRRAGPDVVEMEAVVSEPSAGAPGCCSGAPALGLTQVPrkkkvrfsvAGPSPNKPGSGQASARPSAPq 529
Cdd:PHA03247  2809 aavLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP---------GGDVRRRPPSRSPAAKPAAP- 2878
                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 1622996152  530 tatgahggpgAWEAVAVGPRPHQPRILKHLPRPPPS 565
Cdd:PHA03247  2879 ----------ARPPVRRLARPAVSRSTESFALPPDQ 2904
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
182-583 5.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 5.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 182 RKKRRAVGAKGGGHTGASASAQTGSPLLPAASPETAKLMAKAGQEELG-PGPAGAPEPGPRSPVQEDRPGPGlglstPVP 260
Cdd:PRK07764  380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAaPQPAPAPAPAPAPPSPAGNAPAG-----GAP 454
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 261 VTEQGTDQIRTPRRAKLHTVSttvwealPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDM--AVSTPASEPQ 338
Cdd:PRK07764  455 SPPPAAAPSAQPAPAPAAAPE-------PTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERwpEILAAVPKRS 527
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 339 PDTDMAVSTPASEPQPDRD---MAVSIPA-----SKPQSDTAVSTPASEP-----QSSVALSTPISKPQLDTDVAVSTPA 405
Cdd:PRK07764  528 RKTWAILLPEATVLGVRGDtlvLGFSTGGlarrfASPGNAEVLVTALAEElggdwQVEAVVGPAPGAAGGEGPPAPASSG 607
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 406 SKHGLDVALPTAGPVAKlevASSPPVSEAVPRMTESSGLVSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEPSAGAPG 485
Cdd:PRK07764  608 PPEEAARPAAPAAPAAP---AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPA 684
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 486 CCSGAPALGLTQVPRKKKVRFSVAGPSPNKPGSGQASARPSAPQTAtgahGGPGAWEAVAVGPRPHQPRILKHLPR---P 562
Cdd:PRK07764  685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA----PSPAADDPVPLPPEPDDPPDPAGAPAqppP 760
                         410       420
                  ....*....|....*....|.
gi 1622996152 563 PPSAVTRVGPGSSFAVTLPEA 583
Cdd:PRK07764  761 PPAPAPAAAPAAAPPPSPPSE 781
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
179-491 6.86e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.94  E-value: 6.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 179 SPSRKKRRAVGAKGGGHTGASASAQTGSPLLPAASPETAKLMAKAGQEELGPGPAGAPEPGPRSPVQEDRPGPGLGLSTP 258
Cdd:pfam17823 122 SPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASS 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 259 VPVTEQGTDQIRTPRRAKLHTVSTTVWEALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQ 338
Cdd:pfam17823 202 APATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLS 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996152 339 PDTDMAVSTPASEPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSVALSTPISKPQLDTDVAVSTPASKHGLDVALPTAG 418
Cdd:pfam17823 282 PAKHMPSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSAS 361
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996152 419 PVAKLEVASSPPVSEAVPrmtessglVSTPVPRADAAGLAWPPTRRAgPDVVEMEAVVSEPSAGAPGCCSGAP 491
Cdd:pfam17823 362 PVPVLHTSMIPEVEATSP--------TTQPSPLLPTQGAAGPGILLA-PEQVATEATAGTASAGPTPRSSGDP 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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