NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1699951036|ref|NP_001358237|]
View 

cytochrome c oxidase assembly factor 1 homolog isoform a [Homo sapiens]

Protein Classification

cytochrome c oxidase assembly factor 1 family protein( domain architecture ID 10554697)

cytochrome c oxidase assembly factor 1 family protein similar to Saccharomyces cerevisiae cytochrome c oxidase assembly factor 1 that is required for efficient assembly of cytochrome c oxidase in the mitochondrial inner membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Coa1 pfam08695
Cytochrome oxidase complex assembly protein 1; Coa1 is an inner mitochondrial membrane protein ...
 18-134 3.19e-26

Cytochrome oxidase complex assembly protein 1; Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteriztic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex.


:

Pssm-ID: 430157  Cd Length: 117  Bit Score: 95.39  E-value: 3.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699951036  18 RILFhGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEAQEALG--PPLNIHYLKLIDRENFVDiVDAKLKIPVSG 95
Cdd:pfam08695   1 RVTF-AIFVIGVGAALAYIFNYEKTSSPIYRSTLYQLRRSPEARELLGdnIPFKSGWPWISGELNTVQ-GRIDISFPVKG 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1699951036  96 SKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFK 134
Cdd:pfam08695  79 SKGSGTVYLTATRESKRHPFHIHEWSLTVDDGKVIDLLD 117
 
Name Accession Description Interval E-value
Coa1 pfam08695
Cytochrome oxidase complex assembly protein 1; Coa1 is an inner mitochondrial membrane protein ...
 18-134 3.19e-26

Cytochrome oxidase complex assembly protein 1; Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteriztic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex.


Pssm-ID: 430157  Cd Length: 117  Bit Score: 95.39  E-value: 3.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699951036  18 RILFhGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEAQEALG--PPLNIHYLKLIDRENFVDiVDAKLKIPVSG 95
Cdd:pfam08695   1 RVTF-AIFVIGVGAALAYIFNYEKTSSPIYRSTLYQLRRSPEARELLGdnIPFKSGWPWISGELNTVQ-GRIDISFPVKG 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1699951036  96 SKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFK 134
Cdd:pfam08695  79 SKGSGTVYLTATRESKRHPFHIHEWSLTVDDGKVIDLLD 117
 
Name Accession Description Interval E-value
Coa1 pfam08695
Cytochrome oxidase complex assembly protein 1; Coa1 is an inner mitochondrial membrane protein ...
 18-134 3.19e-26

Cytochrome oxidase complex assembly protein 1; Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteriztic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex.


Pssm-ID: 430157  Cd Length: 117  Bit Score: 95.39  E-value: 3.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699951036  18 RILFhGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEAQEALG--PPLNIHYLKLIDRENFVDiVDAKLKIPVSG 95
Cdd:pfam08695   1 RVTF-AIFVIGVGAALAYIFNYEKTSSPIYRSTLYQLRRSPEARELLGdnIPFKSGWPWISGELNTVQ-GRIDISFPVKG 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1699951036  96 SKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFK 134
Cdd:pfam08695  79 SKGSGTVYLTATRESKRHPFHIHEWSLTVDDGKVIDLLD 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH