NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1731767394|ref|NP_001359221|]
View 

repulsive guidance molecule B isoform 3 precursor [Mus musculus]

Protein Classification

repulsive guidance molecule family protein( domain architecture ID 10534810)

repulsive guidance molecule (RGM) family protein may have several functions in the developing and adult nervous system, including regulation of cephalic neural tube closure, inhibition of neurite outgrowth and cortical neuron branching, and the formation of mature synapses

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 57-218 3.74e-85

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


:

Pssm-ID: 461940  Cd Length: 165  Bit Score: 250.35  E-value: 3.74e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1731767394  57 CRIQKCTTDFVALTAHLNSAADGfDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPE 136
Cdd:pfam06535   1 CKILKCNSEYVAATSALGGGPEP-NEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPRPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1731767394 137 -----VTHDPCNYHShggvREHGGgdqRPPNYLFCGLFGDPHLRTFKDHFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 211
Cdd:pfam06535  80 sppasPSPDICTYEG----RFSKG---KPPEYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGS 152


                  ....*..
gi 1731767394 212 SATATNK 218
Cdd:pfam06535 153 LATATTK 159
 
Name Accession Description Interval E-value
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 57-218 3.74e-85

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461940  Cd Length: 165  Bit Score: 250.35  E-value: 3.74e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1731767394  57 CRIQKCTTDFVALTAHLNSAADGfDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPE 136
Cdd:pfam06535   1 CKILKCNSEYVAATSALGGGPEP-NEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPRPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1731767394 137 -----VTHDPCNYHShggvREHGGgdqRPPNYLFCGLFGDPHLRTFKDHFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 211
Cdd:pfam06535  80 sppasPSPDICTYEG----RFSKG---KPPEYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGS 152


                  ....*..
gi 1731767394 212 SATATNK 218
Cdd:pfam06535 153 LATATTK 159
 
Name Accession Description Interval E-value
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 57-218 3.74e-85

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461940  Cd Length: 165  Bit Score: 250.35  E-value: 3.74e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1731767394  57 CRIQKCTTDFVALTAHLNSAADGfDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPE 136
Cdd:pfam06535   1 CKILKCNSEYVAATSALGGGPEP-NEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPRPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1731767394 137 -----VTHDPCNYHShggvREHGGgdqRPPNYLFCGLFGDPHLRTFKDHFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 211
Cdd:pfam06535  80 sppasPSPDICTYEG----RFSKG---KPPEYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGS 152


                  ....*..
gi 1731767394 212 SATATNK 218
Cdd:pfam06535 153 LATATTK 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH