|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
27-758 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 1033.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 27 MAPTWASDVPLVQSPASQDVLERRLDAQRSTVTTWGQDFCGDGQGLGRRGRSLELGFSSALSQQAELISRQLQELRRLEE 106
Cdd:pfam07111 1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 107 EVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQAH 186
Cdd:pfam07111 81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 187 QKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEW 266
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 267 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 346
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 347 QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 426
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 427 EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLS 506
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 507 VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEE 586
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 587 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEAR 666
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 667 KEEGQRLTRRVQELERDKNLML--------------QRLLAVLPSGVNKKCSPRS---VESSSSESPAAASCKESVKGSL 729
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLatlqqegllsrykqQRLLAVLPSGLDKKSVVSSprpECSASAPIPAAVPTRESIKGSL 720
|
730 740
....*....|....*....|....*....
gi 1732428761 730 TVLLDNLQGLSEAISRDEDICVEDNQNTK 758
Cdd:pfam07111 721 TVLLDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-681 |
5.07e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 5.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 99 QELRRLEEEVRSLRETSLQQkmRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQE- 177
Cdd:COG1196 220 EELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEl 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 178 -QLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQ 256
Cdd:COG1196 298 aRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 257 VlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQpldplepefpkkcrslLRN 336
Cdd:COG1196 378 E------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE----------------LEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 337 WREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstksLQMELDQAQEARR 416
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------LEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 417 RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSE 496
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 497 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAA 576
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA---GRLREVTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 577 RRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQ 656
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580 590
....*....|....*....|....*....|....
gi 1732428761 657 ELRRLQDEARKEEG---------QRLTRRVQELE 681
Cdd:COG1196 747 LLEEEALEELPEPPdleelerelERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
94-702 |
7.50e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 85.58 E-value: 7.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 94 ISRQLQELRRLEE-----EVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKE- 167
Cdd:PTZ00121 1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEe 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 168 ---------LEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS---LNSLETKRAGEAKQLAMAQKEADMLRNQLSKT 235
Cdd:PTZ00121 1248 ernneeirkFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 236 QEELEAQVTLVESLRKyVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRK 315
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 316 IQPLDPLEPEfPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsqlriqvaELQEQVTSQSQEQAILQRALQDKTAQVE 395
Cdd:PTZ00121 1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKAD----------EAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 396 VERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVAripSLSNRLSYAVRKVHTIK 475
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK---ADEAKKAEEKKKADELK 1552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 476 GLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEV---------ERR 546
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkaeelkkaeEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 547 RLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETR-----LREQLS 621
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEA 1712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 622 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRlqdeaRKEEGQRLTRRVQELERDKNLMLQRLLAVLPSGVNK 701
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK-----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
.
gi 1732428761 702 K 702
Cdd:PTZ00121 1788 E 1788
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
86-683 |
9.51e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 9.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 86 ALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH 165
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 166 KELEEIQSLHQEqlssltqahqkaLDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVtl 245
Cdd:COG1196 313 ELEERLEELEEE------------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 246 veslrkyvgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQpldplepe 325
Cdd:COG1196 379 ------------------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE-------- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 326 fpkkcrslLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstksLQ 405
Cdd:COG1196 433 --------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------LE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 406 MELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALA 485
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 486 QLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEvaqQLEQELQRAQES 565
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA---GRLREVTLEGEG 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 566 LASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQ 645
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1732428761 646 HKATQEKERNQELRRLQDEARKEEGQR--LTRRVQELERD 683
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLeeLERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-629 |
4.40e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 4.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 85 SALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK 164
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 165 HKELEEIQSLHQEQlssltQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVT 244
Cdd:COG1196 382 EELAEELLEALRAA-----AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 245 LVESLRKyvgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEP 324
Cdd:COG1196 457 EEEALLE-----------------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 325 EFPKKCRSLLRNWREKVFALMVQLKAqdlqhrdstsqlriqvAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSL 404
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALA----------------AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 405 QMELDQAQEARRRQEQQIASAEEQLkfvvgamnstqaklqstmtrmDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL 484
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDL---------------------READARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 485 AQLRVESsppSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQE 564
Cdd:COG1196 643 AGRLREV---TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1732428761 565 slasvgQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNE 629
Cdd:COG1196 720 ------ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
96-686 |
1.27e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 96 RQLQELRRlEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAE----------AEGLRTA--LAGAEMVRKNLEEA 163
Cdd:PTZ00121 1128 RKAEEARK-AEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEdakkaeaarkAEEVRKAeeLRKAEDARKAEAAR 1206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 164 KHKELEEIQSLHQEQLSSLTQAHQKALDSL--ASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEA 241
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKkdAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 242 -QVTLVESLRKYVGEQVLPEFPSQEWELERKElldtlkHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKiqpLD 320
Cdd:PTZ00121 1287 eEKKKADEAKKAEEKKKADEAKKKAEEAKKAD------EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA---AD 1357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 321 PLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS 400
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD---EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 401 tkslqmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTikglmAR 480
Cdd:PTZ00121 1435 ------EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE-----AK 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 481 KVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRldAELQLSAhliqQEVGRAREQGEVERRRLIEVAQQLEQELQ 560
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK--AEEKKKA----DELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 561 RAQESlASVGQQLEAARRGQ--QESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQL----SDTKRRLNEARREQ 634
Cdd:PTZ00121 1578 MALRK-AEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLkkkeAEEKKKAEELKKAE 1656
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1732428761 635 AKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQrLTRRVQELERDKNL 686
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA-LKKEAEEAKKAEEL 1707
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
356-693 |
1.37e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 356 RDSTSQLRIQVAELQEQVtsqsqEQAILQRALQDKTAQVEVErmstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGA 435
Cdd:COG1196 192 EDILGELERQLEPLERQA-----EKAERYRELKEELKELEAE-----LLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 436 MNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppseaappldtDLSVELEQLREE 515
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR-----------------ELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 516 RNRLDAELQLsahlIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELT 595
Cdd:COG1196 325 LAELEEELEE----LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 596 QQQEIygQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEgQRLTR 675
Cdd:COG1196 401 QLEEL--EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA-ALLEA 477
|
330
....*....|....*...
gi 1732428761 676 RVQELERDKNLMLQRLLA 693
Cdd:COG1196 478 ALAELLEELAEAAARLLL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
87-691 |
3.81e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 3.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 87 LSQQAElisrQLQELRRLEEEVRSLRETSLqqKMRLETQAVELDALAVAEKAGQAEAEGLRTALAgaemvrknleeAKHK 166
Cdd:TIGR02168 205 LERQAE----KAERYKELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQ-----------ELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 167 ELEEIQSLHQEqLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLV 246
Cdd:TIGR02168 268 KLEELRLEVSE-LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 247 ESLRKYVGEQV--LPEFPSQEWELERK--ELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPL 322
Cdd:TIGR02168 347 EELKEELESLEaeLEELEAELEELESRleELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 323 EPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERM 399
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 400 STKSLQMELDQAQEARRRQEQQIASAE-----------EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAV 468
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 469 RKVHTIKGLMARKVALAQLRVESSPPsEAAPPLD---------TDLSVELEQLREERNR-----LDAELqLSAHLIQQEV 534
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDP-KLRKALSyllggvlvvDDLDNALELAKKLRPGyrivtLDGDL-VRPGGVITGG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 535 GRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ-QQEIYGQALQEKVAEVE 613
Cdd:TIGR02168 665 SAKTNSSILERRREIE---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 614 ---------------TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE------EGQR 672
Cdd:TIGR02168 742 veqleeriaqlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneEAAN 821
|
650
....*....|....*....
gi 1732428761 673 LTRRVQELERDKNLMLQRL 691
Cdd:TIGR02168 822 LRERLESLERRIAATERRL 840
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
86-685 |
3.87e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 86 ALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH 165
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 166 KELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTL 245
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 246 VESLRKY--------------------VGEQVLPEfpsQEWELERKELL----------------DTLKHLKEDRADLQA 289
Cdd:TIGR02168 498 QENLEGFsegvkallknqsglsgilgvLSELISVD---EGYEAAIEAALggrlqavvvenlnaakKAIAFLKQNELGRVT 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 290 TVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEpEFPKKCRSLLRNWREKVF---------ALMVQLKAQ--------D 352
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV-KFDPKLRKALSYLLGGVLvvddldnalELAKKLRPGyrivtldgD 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 353 LQHRD------------STSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQ 420
Cdd:TIGR02168 654 LVRPGgvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSR 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 421 QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKglmaRKVALAQLRVEssppseaapp 500
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIE---------- 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 501 ldtDLSVELEQLREERNRLDAELQLSAHLIQQeVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 580
Cdd:TIGR02168 793 ---QLKEELKALREALDELRAELTLLNEEAAN-LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 581 QESTEEAASLRQELTQQQEIYGQA------LQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQE 651
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLrseleeLSEELRELESKrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
650 660 670
....*....|....*....|....*....|....
gi 1732428761 652 KERNQELRRLQDEARKEEGQRLTRRVQELERDKN 685
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
511-695 |
5.04e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 5.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 511 QLREERNRLDAELQL----SAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEE 586
Cdd:COG1196 217 ELKEELKELEAELLLlklrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 587 AASLRQEL--TQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDE 664
Cdd:COG1196 297 LARLEQDIarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190
....*....|....*....|....*....|.
gi 1732428761 665 ARKEEgQRLTRRVQELERDKNLMLQRLLAVL 695
Cdd:COG1196 377 AEEEL-EELAEELLEALRAAAELAAQLEELE 406
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
267-683 |
6.09e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 6.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 267 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKiqpldplepefpkkcRSLLRNWREKVfalmV 346
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL---------------RLELEELELEL----E 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 347 QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 426
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 427 EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSppseaappldtdls 506
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL-------------- 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 507 VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEE 586
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 587 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKavvslRQIQHKATQEKERNQELRRLQDEAR 666
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA-----AAIEYLKAAKAGRATFLPLDKIRAR 585
|
410
....*....|....*..
gi 1732428761 667 KEEGQRLTRRVQELERD 683
Cdd:COG1196 586 AALAAALARGAIGAAVD 602
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
31-451 |
7.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 7.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 31 WASDVPLVQSPASQDVLERRLDAQRSTVTTwgqdfcgDGQGLGRRGRSL---ELGFSSALSQQaelisrqlQELRRLEEE 107
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAKKLRPGYRIVTL-------DGDLVRPGGVITggsAKTNSSILERR--------REIEELEEK 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 108 VRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQahq 187
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE--- 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 188 kaLDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAqvTLVESLRKYVGEQVLpEFPSQEWE 267
Cdd:TIGR02168 763 --IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL--LNEEAANLRERLESL-ERRIAATE 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 268 LERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKcRSLLRNWREKVFALMVQ 347
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRE 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 348 LKAQDLQHRDST---SQLRIQVAELQEQVTSQSQ--EQAILQRALQDKTAQVEVERmSTKSLQMELDQAQEARRRQEQQI 422
Cdd:TIGR02168 917 LEELREKLAQLElrlEGLEVRIDNLQERLSEEYSltLEEAEALENKIEDDEEEARR-RLKRLENKIKELGPVNLAAIEEY 995
|
410 420 430
....*....|....*....|....*....|..
gi 1732428761 423 ASAEEQLKFVVGAM---NSTQAKLQSTMTRMD 451
Cdd:TIGR02168 996 EELKERYDFLTAQKedlTEAKETLEEAIEEID 1027
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
216-629 |
1.44e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 216 KQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyvgeqvlpefpsQEWELERKelldtLKHLKEDRADLQATVELLQ 295
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRK------------ELEELSRQ-----ISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 296 VRVQSLTHMLALQEEELTRKIQPLDPLEPEFpkkcrsllrnwrEKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTS 375
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEEL------------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 376 QSQEQAILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVA 455
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIA-------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 456 RIPSLSNRLSYAVRKVHTIKGLMarkvalaqlrvessppseaappldTDLSVELEQLREERNRLDAELQLSAHLIQQEVG 535
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKR------------------------SELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 536 RAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASL---RQELTQQQEIYGQA---LQEKV 609
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELkerYDFLTAQKEDLTEAketLEEAI 1023
|
410 420
....*....|....*....|
gi 1732428761 610 AEVETRLREQLSDTKRRLNE 629
Cdd:TIGR02168 1024 EEIDREARERFKDTFDQVNE 1043
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
89-689 |
6.31e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 6.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 89 QQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEglrTALAGAEMVRKNLEEAKHKEL 168
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHE---VATSIREISCQQHTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 169 EEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKT-QEELEAQVTLVE 247
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTaQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 248 SLRKYVgeqvlpefpsqewelERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFP 327
Cdd:TIGR00618 464 SAQSLK---------------EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTR 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 328 KKCRSLLRNWR-----EKVFALMV-------QLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQdktAQVE 395
Cdd:TIGR00618 529 RMQRGEQTYAQletseEDVYHQLTserkqraSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE---KLSE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 396 VERMSTKSLQMELDQAQEA----RRRQEQQIASAEEQLKFvvgamnSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKV 471
Cdd:TIGR00618 606 AEDMLACEQHALLRKLQPEqdlqDVRLHLQQCSQELALKL------TALHALQLTLTQERVREHALSIRVLPKELLASRQ 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 472 HTIKGLMARKVALAQLRVESSPPSEAAPPLDT---DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRL 548
Cdd:TIGR00618 680 LALQKMQSEKEQLTYWKEMLAQCQTLLRELEThieEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR 759
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 549 IEVAQQLEQE----LQRAQEsLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQAL---QEKVAEVETRLREQLS 621
Cdd:TIGR00618 760 TEAHFNNNEEvtaaLQTGAE-LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILnlqCETLVQEEEQFLSRLE 838
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1732428761 622 DTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE---EGQRLTRRVQELERDKNLMLQ 689
Cdd:TIGR00618 839 EKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKiqfDGDALIKFLHEITLYANVRLA 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-668 |
1.57e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 357 DSTSQLRIQVAELQEQVtsqsqEQAILQRALQD--KTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVG 434
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 435 AMNSTQAKLQSTMTRMDQAVARIPSLSNRLSyavRKVHTIKGLMARKVALAQLRVESSPPSEAAPP-------LDTDLSV 507
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEIS---RLEQQKQILRERLANLERQLEELEAQLEELESkldelaeELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 508 ELEQLREERNRLDAELQlSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 587
Cdd:TIGR02168 345 KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 588 ASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARK 667
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
.
gi 1732428761 668 E 668
Cdd:TIGR02168 504 F 504
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
152-690 |
3.83e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 152 GAEMVRKNLEEAKHkeleEIQSLhQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQ 231
Cdd:pfam15921 72 GKEHIERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 232 LSKTQEELEAQVTLVESLRKYVGEQVlpefpsqewELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEE 311
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 312 LTRKIQP-LDPLEPEFpkkcrSLLRNwreKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDK 390
Cdd:pfam15921 218 LGSAISKiLRELDTEI-----SYLKG---RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE------ITGL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 391 TAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKfvvgamnSTQAKLQSTMTRMDQavaripslsnrlSYAVRK 470
Cdd:pfam15921 284 TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE-------STVSQLRSELREAKR------------MYEDKI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 471 VHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERR---R 547
Cdd:pfam15921 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRElddR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 548 LIEVaQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 625
Cdd:pfam15921 425 NMEV-QRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtVSDLTA 503
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1732428761 626 RLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLQR 690
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILR 568
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
402-637 |
4.54e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 402 KSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARK 481
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 482 VALAQLRVESSPPSEAAPPldtdlsveleqlrEERNRLDAELQLSAHLIQQEVGRAREQgeverRRLIEVAQQLEQELQR 561
Cdd:COG4942 110 LRALYRLGRQPPLALLLSP-------------EDFLDAVRRLQYLKYLAPARREQAEEL-----RADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1732428761 562 AQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvETRLREQLSDTKRRLNEARREQAKA 637
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
269-684 |
4.83e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 269 ERKELLDTLKHLKEDRADLQATV-------ELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEfpkkcrsllrnwREKV 341
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDAD------------AEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 342 FALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ-RA--LQDKTAQVEVERMSTKSlqmELDQAQEARRRQ 418
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeRAeeLREEAAELESELEEARE---AVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 419 EQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLM-ARKVALAQLRVESSPPSEA 497
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLeAGKCPECGQPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 498 APPLD---TDLSVELEQLREERNRLDAELQlsahliqqevgRAREQGEVERR--RLIEVAQQLEQELQRAQESLASVGQQ 572
Cdd:PRK02224 470 IEEDRervEELEAELEDLEEEVEEVEERLE-----------RAEDLVEAEDRieRLEERREDLEELIAERRETIEEKRER 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 573 LEAARRGQQESTEEAASLRqELTQQQEIYGQALQEKVAEVETRlREQLSDTKRRLN------EARREQAKAVVSLR-QIQ 645
Cdd:PRK02224 539 AEELRERAAELEAEAEEKR-EAAAEAEEEAEEAREEVAELNSK-LAELKERIESLErirtllAAIADAEDEIERLReKRE 616
|
410 420 430
....*....|....*....|....*....|....*....
gi 1732428761 646 HKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDK 655
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
87-421 |
4.95e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 4.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 87 LSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK-- 164
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKae 1567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 165 -HKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGlEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQV 243
Cdd:PTZ00121 1568 eAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 244 TLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVEllqvrvqslthmlalQEEELTRKIQPLDPLE 323
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK---------------KEAEEAKKAEELKKKE 1711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 324 PEFPKKCRSLLRNWREKvfalmvQLKAQDLQHRDSTSQLRIQVAELQEQvtsqsQEQAILQRALQDKTAQVEVERMSTKS 403
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
330
....*....|....*...
gi 1732428761 404 LQMELDQAQEARRRQEQQ 421
Cdd:PTZ00121 1781 IEEELDEEDEKRRMEVDK 1798
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
366-678 |
2.90e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 366 VAELQEQVTSQ---SQEQAILQRALQDKTAQVEVERMSTKS----LQMELDqAQEARRRQEQQIASAEEQLKFVVGAMNS 438
Cdd:PRK04863 357 LEELEERLEEQnevVEEADEQQEENEARAEAAEEEVDELKSqladYQQALD-VQQTRAIQYQQAVQALERAKQLCGLPDL 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 439 TQAKLQstmTRMDQAVARIPSLSNRLSYAVRKV---HTIKGLMARKVALAQLRVESSPPSEAAppldtDLSVE-LEQLRE 514
Cdd:PRK04863 436 TADNAE---DWLEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKIAGEVSRSEAW-----DVARElLRRLRE 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 515 ERNRLDAELQLSAHLIQQEvGRAREQGEVERRrLIEVAQQLEQELQRAQEsLASVGQQLEAARRGQQESTEEAASLRQEL 594
Cdd:PRK04863 508 QRHLAEQLQQLRMRLSELE-QRLRQQQRAERL-LAEFCKRLGKNLDDEDE-LEQLQEELEARLESLSESVSEARERRMAL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 595 TQQQEiygqALQEKVAEVETRLRE--QLSDTKRRLNE---ARREQAKAVVSLRQiqhkATQEKERNQELRRLQDEARKEE 669
Cdd:PRK04863 585 RQQLE----QLQARIQRLAARAPAwlAAQDALARLREqsgEEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQA 656
|
....*....
gi 1732428761 670 GQRLTRRVQ 678
Cdd:PRK04863 657 LDEEIERLS 665
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
228-680 |
3.31e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 228 LRNQLSKTQEELEAQVTLVESLRKYVGEQVLpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLAL 307
Cdd:COG4913 260 LAERYAAARERLAELEYLRAALRLWFAQRRL-----ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 308 ----QEEELTRKIQPLdplepefpkkcRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAIL 383
Cdd:COG4913 335 nggdRLEQLEREIERL-----------ERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 384 Q----------RALQDKTAQVEVERMSTKSLQMELDQAQEARRRQ-EQQIASAEEQLKFVV-------------GAMNST 439
Cdd:COG4913 404 EealaeaeaalRDLRRELRELEAEIASLERRKSNIPARLLALRDAlAEALGLDEAELPFVGelievrpeeerwrGAIERV 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 440 qakLQSTMTRM-------DQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQ--LRVESSPPSEAAPPLDTDLS---- 506
Cdd:COG4913 484 ---LGGFALTLlvppehyAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDslAGKLDFKPHPFRAWLEAELGrrfd 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 507 ---VE-LEQLREERNRLDAELQL----------------SAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESL 566
Cdd:COG4913 561 yvcVDsPEELRRHPRAITRAGQVkgngtrhekddrrrirSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 567 ASVGQQLEAARRGQQESTEE--AASLRQELTQQQEIYgQALQEKVAEVEtRLREQLSDTKRRLNEARREQAKAVVSLRQI 644
Cdd:COG4913 641 DALQERREALQRLAEYSWDEidVASAEREIAELEAEL-ERLDASSDDLA-ALEEQLEELEAELEELEEELDELKGEIGRL 718
|
490 500 510
....*....|....*....|....*....|....*.
gi 1732428761 645 QHKATQEKERNQELRRLQDEARKEEGQRLTRRVQEL 680
Cdd:COG4913 719 EKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
269-683 |
4.71e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 269 ERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQE-----EELTRKIQPLDPLEPEFPKKCRSL--LRNWREKV 341
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyqelEALEAELAELPERLEELEERLEELreLEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 342 FALMVQLKAQ-DLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQ 420
Cdd:COG4717 169 EAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 421 QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTikglmarkvalaqlrvessPPSEAAPP 500
Cdd:COG4717 249 RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG-------------------KEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 501 LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQ-QLEQELQRAQESLASVGQQLEAARRG 579
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 580 QQESTEEAASLRQELTQQQE----IYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKaTQEKERN 655
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEqleeLLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE-LEQLEED 468
|
410 420
....*....|....*....|....*...
gi 1732428761 656 QELRRLQDEArkeegQRLTRRVQELERD 683
Cdd:COG4717 469 GELAELLQEL-----EELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
508-683 |
5.91e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 5.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 508 ELEQLREERNRLdAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQ----LEQELQRAQESLASVGQQLEAARRGQQES 583
Cdd:COG4913 243 ALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRrlelLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 584 TEEAASLRQELTQQQeiyGQALQekvaevetRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRlQD 663
Cdd:COG4913 322 REELDELEAQIRGNG---GDRLE--------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA-EA 389
|
170 180
....*....|....*....|
gi 1732428761 664 EARKEEGQRLTRRVQELERD 683
Cdd:COG4913 390 AALLEALEEELEALEEALAE 409
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
478-622 |
6.87e-06 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 49.95 E-value: 6.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 478 MARKVALAQLRVESSPPSEAAPP--LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLIEVAQQL 555
Cdd:PRK11448 111 LAFRLAVWFHRTYGKDWDFKPGPfvPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQ-ELVALEGLAAEL 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732428761 556 EQELQRAQESLASVgqqleaarrgQQESTEEAASLRQELTQQQEIYGQALQekVAEVETRL--REQLSD 622
Cdd:PRK11448 190 EEKQQELEAQLEQL----------QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETRIliDQQLRK 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
505-743 |
7.15e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 505 LSVELEQLREERNRLDAELQLSAHLIQQ---EVGRAREQGEVERRRLIEVAQQ---LEQELQRAQESLASVGQQLEAA-- 576
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELea 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 577 -----RRGQQESTEEAASLRQELTQQQEIYgQALQEKVAEVE-----------------TRLREQLSDTKRRLNEARREQ 634
Cdd:TIGR02168 324 qleelESKLDELAEELAELEEKLEELKEEL-ESLEAELEELEaeleelesrleeleeqlETLRSKVAQLELQIASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 635 AKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQrltRRVQELERDKNLMLQRLLAVLPSGVNKKCSPRSVESSSSE 714
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ---AELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260
....*....|....*....|....*....
gi 1732428761 715 SPAAASCKESVKGSLTVLLDNLQGLSEAI 743
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEGV 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
418-683 |
1.16e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 418 QEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMArkvalaqlrvessppsea 497
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA------------------ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 498 appldtDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIeVAQQLEQELQRAQESLASVGQQLEAAR 577
Cdd:COG4942 80 ------ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 578 RGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrlreqlsdtKRRLNEARREQAKAVVSLRQiqhkatQEKERNQE 657
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEE------------RAALEALKAERQKLLARLEK------ELAELAAE 214
|
250 260
....*....|....*....|....*.
gi 1732428761 658 LRRLQDEArkeegQRLTRRVQELERD 683
Cdd:COG4942 215 LAELQQEA-----EELEALIARLEAE 235
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
505-690 |
1.42e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.90 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 505 LSVELEQ--LREERNRLDAELQLSAHLIQQEVGRAREQgeverrrLIEVAQQLEQELQRAQE---SLASVGQQLEAARRG 579
Cdd:PRK10929 80 LSAELRQqlNNERDEPRSVPPNMSTDALEQEILQVSSQ-------LLEKSRQAQQEQDRAREisdSLSQLPQQQTEARRQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 580 QQESTEEAASLRQELTQQQEIYGQALQekvAEVETRlreqlsdtKRRLNEARREQAKAvvslrqiqhkatqekERNQELR 659
Cdd:PRK10929 153 LNEIERRLQTLGTPNTPLAQAQLTALQ---AESAAL--------KALVDELELAQLSA---------------NNRQELA 206
|
170 180 190
....*....|....*....|....*....|.
gi 1732428761 660 RLQDEARKEEGQRLTRRVQELERDKNLMLQR 690
Cdd:PRK10929 207 RLRSELAKKRSQQLDAYLQALRNQLNSQRQR 237
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
395-684 |
1.42e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 395 EVERMSTK--SLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvh 472
Cdd:TIGR02169 675 ELQRLRERleGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE-- 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 473 tikgLMARKVALAQLRVESSPPSEaappldtdlsvELEQLREERNRLDAELqlsAHLIQQEVGRAREQGEVERRRLIEVA 552
Cdd:TIGR02169 753 ----IENVKSELKELEARIEELEE-----------DLHKLEEALNDLEARL---SHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 553 QQLEQELQRAQESLasvgQQLEAARRGQQESTEEAASLRQELTQQQEIyGQALQEKVAEVETRLREQLSDTKRRLNEARR 632
Cdd:TIGR02169 815 REIEQKLNRLTLEK----EYLEKEIQELQEQRIDLKEQIKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1732428761 633 EQAKAVVSLRQIQhKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:TIGR02169 890 ERDELEAQLRELE-RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-682 |
1.65e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 504 DLSVELEQLREERNRLDAELQLsahlIQQEVGRAREQGEVERRrlIEVAQQLEQELQRAQESLASVGQQLEAARRGQ--- 580
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEA----LEAELDALQERREALQR--LAEYSWDEIDVASAEREIAELEAELERLDASSddl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 581 QESTEEAASLRQELTQQQEIYGQaLQEKVAEVE---TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQE 657
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDE-LKGEIGRLEkelEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
170 180
....*....|....*....|....*
gi 1732428761 658 LRRLQDEARKEEGQRLTRRVQELER 682
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEELER 791
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
533-702 |
3.32e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 533 EVGRAREQGEVERRRLIEVAQQLEQELQRAQESL-ASVGQQLEAARRGQQESTEEAASlRQELTQQQEIYGQALQEKVAE 611
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 612 -----VETRLREQL--SDTKRRLNEARR--EQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELER 682
Cdd:PTZ00121 1180 aarkaEEVRKAEELrkAEDARKAEAARKaeEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
170 180
....*....|....*....|
gi 1732428761 683 DKNLMLQRLLAVLPSGVNKK 702
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARK 1279
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-672 |
6.24e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 504 DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQES 583
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 584 TEEAASLRQELT------QQQEIYGQALQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKatqEKER 654
Cdd:TIGR02169 328 EAEIDKLLAEIEelereiEEERKRRDKLTEEYAELKEEledLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INEL 404
|
170
....*....|....*...
gi 1732428761 655 NQELRRLQDEARKEEGQR 672
Cdd:TIGR02169 405 KRELDRLQEELQRLSEEL 422
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-596 |
6.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 6.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 268 LERKELLDTLKHLKE-DRADLQATVELLQVRVQSLTHMLALQEeeltrKIQPLDPLEPEFPKKCR--SLLRNWRE-KVFA 343
Cdd:TIGR02169 153 VERRKIIDEIAGVAEfDRKKEKALEELEEVEENIERLDLIIDE-----KRQQLERLRREREKAERyqALLKEKREyEGYE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 344 LMVQLKAqdlqhrdstsqLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVE--VERMSTKSLQMELDQAQEARRRQEQ- 420
Cdd:TIGR02169 228 LLKEKEA-----------LERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 421 -----QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRL-SYAVRKVHTIKGLMARKVALAQLRVESSPP 494
Cdd:TIGR02169 297 geleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 495 SEAAPPLDTDLS---VELEQLREERNRLDAE---LQLSAHLIQQEVGRAREQGEVERRRLIEVA----------QQLEQE 558
Cdd:TIGR02169 377 DKEFAETRDELKdyrEKLEKLKREINELKREldrLQEELQRLSEELADLNAAIAGIEAKINELEeekedkaleiKKQEWK 456
|
330 340 350
....*....|....*....|....*....|....*...
gi 1732428761 559 LQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ 596
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-668 |
7.08e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 504 DLSVELEQLREERNRLDAELQLSAHLIQ--------QEVGRAREQGEVERRRLIE---VAQQLEQELQRAQESLASVGQQ 572
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEyswdeidvASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEE 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 573 LEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQEK 652
Cdd:COG4913 708 LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF---AAALGDAVERELRENLEERIDALRARLNR 784
|
170
....*....|....*.
gi 1732428761 653 ERnQELRRLQDEARKE 668
Cdd:COG4913 785 AE-EELERAMRAFNRE 799
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
98-680 |
1.50e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 98 LQELRRLEEEVRSLREtSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKH-----KELEEIQ 172
Cdd:TIGR00618 235 LQQTQQSHAYLTQKRE-AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAvtqieQQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 173 SLHQEQLSSLTQAHQKALDSLASKAEGLE--KSLNSL-----ETKRAGEAKQLAMAQKE-ADMLRNQLSKTQEELEAQVT 244
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEqrRLLQTLhsqeiHIRDAHEVATSIREISCqQHTLTQHIHTLQQQKTTLTQ 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 245 LVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEP 324
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 325 EFPKKCRSLLRNWREKVFALMVQLKAQDLQH--RDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERmstk 402
Cdd:TIGR00618 474 QLQTKEQIHLQETRKKAVVLARLLELQEEPCplCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH---- 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 403 slqmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKV 482
Cdd:TIGR00618 550 ----QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 483 ALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRldaELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRA 562
Cdd:TIGR00618 626 DLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR---EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQC 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 563 QESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLRE--------------------QLSD 622
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKArteahfnnneevtaalqtgaELSH 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1732428761 623 TKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQEL 680
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEK 840
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
96-693 |
1.68e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 96 RQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLH 175
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 176 QEQLssltQAHQKALDSLASKAEGLEKSLNSLETKRAG--------EAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVE 247
Cdd:pfam02463 320 EKEK----KKAEKELKKEKEEIEELEKELKELEIKREAeeeeeeelEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 248 SLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFP 327
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 328 KK-------CRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMS 400
Cdd:pfam02463 476 ETqlvklqeQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 401 TKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYA-VRKVHTIKGLMA 479
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkVVEGILKDTELT 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 480 RKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQE----VGRAREQGEVERRRLIEVAQQL 555
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELakeeILRRQLEIKKKEQREKEELKKL 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 556 EQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQA 635
Cdd:pfam02463 716 KLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1732428761 636 KAVVsLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLQRLLA 693
Cdd:pfam02463 796 LKAQ-EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 852
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
510-683 |
1.69e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 510 EQLREERNRLD-AELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQ---ELQRAQESLASVGQQLEAARRGQ----- 580
Cdd:COG3206 182 EQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEaraELAEAEARLAALRAQLGSGPDALpellq 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 581 ----QESTEEAASLRQELTQQQEIYG------QALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQ 650
Cdd:COG3206 262 spviQQLRAQLAELEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQ 338
|
170 180 190
....*....|....*....|....*....|...
gi 1732428761 651 EKERNQELRRLQDEARkeegqrltrrvqELERD 683
Cdd:COG3206 339 LEARLAELPELEAELR------------RLERE 359
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
402-606 |
1.73e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 402 KSLQMELDQAQEARR--RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMA 479
Cdd:COG3206 185 PELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 480 RKVALAQLRvessppseaappldtDLSVELEQLRE-------ERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVA 552
Cdd:COG3206 265 IQQLRAQLA---------------ELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1732428761 553 QQLEQELQRAQESLASVGQQLEaarrgqqesteEAASLRQELTQQQEIYGQALQ 606
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEA-----------ELRRLEREVEVARELYESLLQ 372
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
508-673 |
1.80e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 508 ELEQLREERNRLDaelQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRgQQESTEEA 587
Cdd:COG4717 86 KEEEYAELQEELE---ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE-RLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 588 ASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQ----HKATQEKERNQELRRLQD 663
Cdd:COG4717 162 EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQeeleELEEELEQLENELEAAAL 241
|
170
....*....|
gi 1732428761 664 EARKEEGQRL 673
Cdd:COG4717 242 EERLKEARLL 251
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
70-690 |
1.96e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 70 QGLGRRGRSLELGFSSALSQQAELISRQLQELRRLEEEVRSLRETSLQ----QKMRLETQAVELDALAvaEKAGQAEAEG 145
Cdd:pfam12128 261 SHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGelsaADAAVAKDRSELEALE--DQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 146 LRTALAGAEM---VRKNLEEakhkeLEEIQSLHQEQLSSLTQAHQ----KALDSLASKAEGLEKSL-NSLETKRAGEAKQ 217
Cdd:pfam12128 339 IETAAADQEQlpsWQSELEN-----LEERLKALTGKHQDVTAKYNrrrsKIKEQNNRDIAGIKDKLaKIREARDRQLAVA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 218 LAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRAD-----LQATVE 292
Cdd:pfam12128 414 EDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAanaevERLQSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 293 LLQVRVQSLTHMLALQEEE--LTRKIQPLDPLEPEFPKKCRSLLRNWREKVfalmvQLKAQDLQHRDSTSQLRIQVAELQ 370
Cdd:pfam12128 494 LRQARKRRDQASEALRQASrrLEERQSALDELELQLFPQAGTLLHFLRKEA-----PDWEQSIGKVISPELLHRTDLDPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 371 EQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRM 450
Cdd:pfam12128 569 VWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTAL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 451 DQAVARIPSLSNRLSyavrkvhtikglmARKVALAQLRVEssppseaappldtdlsvELEQLREERNRLDAELQLSAHLI 530
Cdd:pfam12128 649 KNARLDLRRLFDEKQ-------------SEKDKKNKALAE-----------------RKDSANERLNSLEAQLKQLDKKH 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 531 QQEVGRAREQGEVERRRLIEVAQQLEQELQRAqesLASVGQQLEAARrgqqesteeaASLRQELTQQQEIYGQALQEKVA 610
Cdd:pfam12128 699 QAWLEEQKEQKREARTEKQAYWQVVEGALDAQ---LALLKAAIAARR----------SGAKAELKALETWYKRDLASLGV 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 611 EVET--RLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERD-KNLM 687
Cdd:pfam12128 766 DPDViaKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRrAKLE 845
|
...
gi 1732428761 688 LQR 690
Cdd:pfam12128 846 MER 848
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-430 |
2.05e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 149 ALAGAEMVRKNLEEAKHKELEEIQSLhQEQLSSLtqahQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADML 228
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRL-RERLEGL----KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 229 RNQLSKTQEELEAQVTLVESLRKYVgEQVLPEFPSQEWELERKELldTLKHLKEDRADLQAtvELLQVRVQSLTHMLALQ 308
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEI-ENVKSELKELEARIEELEE--DLHKLEEALNDLEA--RLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 309 EEELTRKIQPLDPLEPEFPKK--CRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVtsqsQEQAILQRA 386
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLtlEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL----EELEAALRD 879
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1732428761 387 LQDKTAQVEVERmstKSLQMELDQAQEARRRQEQQIASAEEQLK 430
Cdd:TIGR02169 880 LESRLGDLKKER---DELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-430 |
2.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 180 SSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyvgeqvlp 259
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 260 efpsqewelerkELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDplepefpkkcrsLLRNWRE 339
Cdd:COG4942 91 ------------EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------YLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 340 KVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQE 419
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 1732428761 420 QQIASAEEQLK 430
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| TolC |
COG1538 |
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis]; |
337-643 |
2.24e-04 |
|
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441147 [Multi-domain] Cd Length: 367 Bit Score: 44.26 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 337 WREKVFALMVQLKAQDLQHRDSTSQLRIQVAE-------LQEQVTSQSQEQAILQRALQDKTAQVEVERMS---TKSLQM 406
Cdd:COG1538 49 RRARIEAAKAQAEAAEADLRAARLDLAAEVAQayfdllaAQEQLALAEENLALAEELLELARARYEAGLASrldVLQAEA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 407 ELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLsnrLSYAVRKVHTIKGLMAR-KVALA 485
Cdd:COG1538 129 QLAQARAQLAQAEAQLAQARNALALLLGLPPPAPLDLPDPLPPLPPLPPSLPGL---PSEALERRPDLRAAEAQlEAAEA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 486 QLRVESsppSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLievaqQLEQELQRAQES 565
Cdd:COG1538 206 EIGVAR---AAFLPSLSLSASYGYSSSDDLFSGGSDTWSVGLSLSLPLFDGGRNRARVRAAKA-----QLEQAEAQYEQT 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 566 LASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRL-----REQLSDTKRRLNEARREQAKAVVS 640
Cdd:COG1538 278 VLQALQEVEDALAALRAAREQLEALEEALEAAEEALELARARYRAGLASLLdvldaQRELLQAQLNLIQARYDYLLALVQ 357
|
...
gi 1732428761 641 LRQ 643
Cdd:COG1538 358 LYR 360
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
268-693 |
2.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 268 LERKELLDTLKHLKEDRADL---QATVELLQVRVQSLTHMLALQEE--ELTRKIQPLDplepefpkKCRSLLRNWREkvf 342
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLeraHEALEDAREQIELLEPIRELAERyaAARERLAELE--------YLRAALRLWFA--- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 343 almvQLKAQDLQHRdsTSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERMstKSLQMELDQAQEARRRQE 419
Cdd:COG4913 287 ----QRRLELLEAE--LEELRAELARLEAELERLEARLDALReelDELEAQIRGNGGDRL--EQLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 420 QQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvhtikglmaRKVALAQLRVESsppseaap 499
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE---------AEAALRDLRREL-------- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 500 pldTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRARE------------------QGEVER-----RRLIEVAQQLE 556
Cdd:COG4913 422 ---RELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfvgelievrpeeerwRGAIERvlggfALTLLVPPEHY 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 557 QELQRAQESLAS----VGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLR----EQLSDTKRRL- 627
Cdd:COG4913 499 AAALRWVNRLHLrgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVCvdspEELRRHPRAIt 578
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1732428761 628 -------NEARRE--QAKAVVSLRQIQHKATQEKER-NQELRRLQDEARKeegqrLTRRVQELERDKNLMLQRLLA 693
Cdd:COG4913 579 ragqvkgNGTRHEkdDRRRIRSRYVLGFDNRAKLAAlEAELAELEEELAE-----AEERLEALEAELDALQERREA 649
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
104-683 |
2.94e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 104 LEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAgaeMVRKNLEeakhkeleeiqslHQEQLsslt 183
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLN---LVQTALR-------------QQEKI---- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 184 QAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTlveslRKYVGEQVLPEFPS 263
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQT-----RAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 264 QEWELERKELldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIQPLDPLEPEFpKKCRSLL 334
Cdd:COG3096 425 ARALCGLPDL--TPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAarrqfekayELVCKIAGEVERSQAW-QTARELL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 335 RNWREKvfalmvQLKAQDLQhrdstsQLRIQVAELQEQVTSQSQEQAIL----QRALQDKTAQVEVERMSTK------SL 404
Cdd:COG3096 502 RRYRSQ------QALAQRLQ------QLRAQLAELEQRLRQQQNAERLLeefcQRIGQQLDAAEELEELLAEleaqleEL 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 405 QMELDQAQEAR---RRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIK----GL 477
Cdd:COG3096 570 EEQAAEAVEQRselRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATverdEL 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 478 MARKVAL-AQLRVESSPPSEAAPPLDT---------------DLSVE--------------------LEQLREERNRLDA 521
Cdd:COG3096 650 AARKQALeSQIERLSQPGGAEDPRLLAlaerlggvllseiydDVTLEdapyfsalygparhaivvpdLSAVKEQLAGLED 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 522 ELQlSAHLIQQEV----GRAREQGEVERRRLIEVAQQLEQELQRAQESL---ASVGQQLEAARRGQQESTEEAASLRQEL 594
Cdd:COG3096 730 CPE-DLYLIEGDPdsfdDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLfgrAAREKRLEELRAERDELAEQYAKASFDV 808
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 595 TQQQEIYgQALQEKVAE-----VETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEE 669
Cdd:COG3096 809 QKLQRLH-QAFSQFVGGhlavaFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLA 887
|
650
....*....|....
gi 1732428761 670 GQRLTRRVQELERD 683
Cdd:COG3096 888 DETLADRLEELREE 901
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
74-315 |
3.03e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 74 RRGRSLELGFSSALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGA 153
Cdd:COG4942 2 RKLLLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 154 EMVRKNLE---EAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS------LNSLETKRAGEAKQLAMAQKE 224
Cdd:COG4942 82 EAELAELEkeiAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 225 ADMLRNQLSKTQEELEAQVTLVESLRkyvgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHM 304
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER-------------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|.
gi 1732428761 305 LALQEEELTRK 315
Cdd:COG4942 229 IARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
86-643 |
3.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 86 ALSQQAELISRQLQELRRLEEEVRSLREtslqQKMRLEtQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRK-NLEEAK 164
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDARE----QIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRlELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 165 HKELEEIQSLHQEQLSSLTQAHQKALDSLAS-----------KAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLS 233
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDEleaqirgnggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 234 KTQEELEAQVTLVESLRKYVGEQvlpefpSQEWELERKELLDTLKHLKEDRADLQATVELLQVRV----QSLTHMLALQE 309
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEE------LEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALA 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 310 EELTRKIQPL---------DPLEPEFPKKCRSLLRNWRekvFALMV--QLKAQDLQHRDSTS-QLRIQVAELQEQVTSQS 377
Cdd:COG4913 451 EALGLDEAELpfvgelievRPEEERWRGAIERVLGGFA---LTLLVppEHYAAALRWVNRLHlRGRLVYERVRTGLPDPE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 378 QEQAiLQRALqdktaqveVERMSTKS------LQMELDQAQEARR-------RQEQQIASAEEQLK--FVVGAMN----- 437
Cdd:COG4913 528 RPRL-DPDSL--------AGKLDFKPhpfrawLEAELGRRFDYVCvdspeelRRHPRAITRAGQVKgnGTRHEKDdrrri 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 438 --------STQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKglmARKVALAQLRVESSPPSEAAPPLDtdlsvEL 509
Cdd:COG4913 599 rsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ---ERREALQRLAEYSWDEIDVASAER-----EI 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 510 EQLREERNRLDAELQLSAHLiQQEVGRAREQgeverrrlievAQQLEQELQRAQESLASVGQQLEAARRGQQESTE--EA 587
Cdd:COG4913 671 AELEAELERLDASSDDLAAL-EEQLEELEAE-----------LEELEEELDELKGEIGRLEKELEQAEEELDELQDrlEA 738
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1732428761 588 ASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQ 643
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
267-583 |
7.03e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 267 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 346
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 347 QLkaqdlqhrdstSQLRIQVAELQEQvtsqsqeqailQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 426
Cdd:TIGR02169 302 EI-----------ASLERSIAEKERE-----------LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 427 EQLKFVvgaMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSppseaappldTDLS 506
Cdd:TIGR02169 360 AELKEE---LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL----------ADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 507 VELEQLREERNRLDAELQLSAHLIQQEVGRA------REQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 580
Cdd:TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLeqlaadLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
...
gi 1732428761 581 QES 583
Cdd:TIGR02169 507 RGG 509
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
142-458 |
8.13e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 8.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 142 EAEGLRTALAGAEMVRkNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGL---------EKSLNSLETK-- 210
Cdd:PRK04863 287 EALELRRELYTSRRQL-AAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqqekieryQADLEELEERle 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 211 -----RAGEAKQLAM-------AQKEADMLRNQLSKTQEELEAQVTL-------VESLRKYVGEQVLPEFpsqewelerk 271
Cdd:PRK04863 366 eqnevVEEADEQQEEnearaeaAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERAKQLCGLPDL---------- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 272 elldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIqpLDPLEPEFPKKC-RSLLRNWREkv 341
Cdd:PRK04863 436 ----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAahsqfeqayQLVRKI--AGEVSRSEAWDVaRELLRRLRE-- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 342 falmvqLKAQDlqhrDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstkslqmelDQAQEARRRQEQQ 421
Cdd:PRK04863 508 ------QRHLA----EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE-----------DELEQLQEELEAR 566
|
330 340 350
....*....|....*....|....*....|....*..
gi 1732428761 422 IASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIP 458
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
547-668 |
1.06e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 547 RLIEVAQQleqELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELtqqqEIYGQALQEKVAEVETRLREQLSDTKRR 626
Cdd:PRK00409 502 NIIEEAKK---LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKE 574
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1732428761 627 ----LNEARREQAKAVVSLRQIQ-HKATQEKERN-QELRRLQDEARKE 668
Cdd:PRK00409 575 aqqaIKEAKKEADEIIKELRQLQkGGYASVKAHElIEARKRLNKANEK 622
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
88-686 |
1.17e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 88 SQQAELISRQLQELRRLEEEVR-SLRETSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALagaEMVRKNLEEAK-- 164
Cdd:pfam15921 84 SHQVKDLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL---QNTVHELEAAKcl 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 165 HKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSlnslETKRAGEakQLAMAQKEADMLRNQLSKTQEELEAQVT 244
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEA----SGKKIYE--HDSMSTMHFRSLGSAISKILRELDTEIS 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 245 lveslrkYVGEQVLPEfpsqewelerKELLDTLKHLKEDRADLqatveLLQVRVQSLTHMLALQEEELTrkiqpldplep 324
Cdd:pfam15921 235 -------YLKGRIFPV----------EDQLEALKSESQNKIEL-----LLQQHQDRIEQLISEHEVEIT----------- 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 325 EFPKKCRSLlrnwREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSl 404
Cdd:pfam15921 282 GLTEKASSA----RSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANS- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 405 qmELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKV------------- 471
Cdd:pfam15921 357 --ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELddrnmevqrleal 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 472 -----HTIKGLMARKVALAQLRVESSppsEAAPPLDTDLSVELEQLREERNRLDAE---LQLSAHLIQ------QEVGRA 537
Cdd:pfam15921 435 lkamkSECQGQMERQMAAIQGKNESL---EKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSdltaslQEKERA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 538 REQGEVERRRL---IEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQ------ALQEK 608
Cdd:pfam15921 512 IEATNAEITKLrsrVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVE 591
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1732428761 609 VAEVEtrlrEQLSDTKRRLNEARREQAKAVVSLRQIQHKATqekerNQELRRLQDEARKEEGQRLTRRVQElERDKNL 686
Cdd:pfam15921 592 KAQLE----KEINDRRLELQEFKILKDKKDAKIRELEARVS-----DLELEKVKLVNAGSERLRAVKDIKQ-ERDQLL 659
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
351-669 |
1.42e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 351 QDLQHRDSTSQLRIQVAELQEQVTSQSQ--EQAILQRALQDKTAQV--EVERMSTKSlQMELDQ-AQEARRRQEQQIAsa 425
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKleEAEKARQAEMDRQAAIyaEQERMAMER-ERELERiRQEERKRELERIR-- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 426 EEQLKFVVGAMNSTQaKLQSTMTRMDQAVARipSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEaappldtdl 505
Cdd:pfam17380 367 QEEIAMEISRMRELE-RLQMERQQKNERVRQ--ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ--------- 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 506 sVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTE 585
Cdd:pfam17380 435 -REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 586 EAASLRQELTQQQEIYGQALQEKVAEVETRlreqlsdTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEA 665
Cdd:pfam17380 514 KRKLLEKEMEERQKAIYEEERRREAEEERR-------KQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEK 586
|
....
gi 1732428761 666 RKEE 669
Cdd:pfam17380 587 ARAE 590
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
161-669 |
1.43e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 161 EEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEaDMLRNQLSKTQEELE 240
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQK-REAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 241 AQVTLVESLRKYVGEQVLPEfPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRK--IQP 318
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQ-ERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQssIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 319 LDPLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDKTAQVEVER 398
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDI------LQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 399 MSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvHTIKGLM 478
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK-KAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 479 ARKVALAQLRVESSPPSEAAPPLDTDLS----VELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLIEVAQQ 554
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPgpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE-QMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 555 LEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEiygqALQEKVAEVETRLREQlsdtkrrlnEARREQ 634
Cdd:TIGR00618 575 LTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR----KLQPEQDLQDVRLHLQ---------QCSQEL 641
|
490 500 510
....*....|....*....|....*....|....*
gi 1732428761 635 AKAVVSLRQIQHKATQEKERNQELRRLQDEARKEE 669
Cdd:TIGR00618 642 ALKLTALHALQLTLTQERVREHALSIRVLPKELLA 676
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
84-380 |
2.11e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 84 SSALSQQAELISRQLQEL-RRLEEEVRSLRET--SLQQKMRLETQAVEldALAVAEKAGQAEAEGLrTALAGAEMVRKNL 160
Cdd:PRK10929 104 TDALEQEILQVSSQLLEKsRQAQQEQDRAREIsdSLSQLPQQQTEARR--QLNEIERRLQTLGTPN-TPLAQAQLTALQA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 161 EEAKHKELeeIQSLHQEQLSsltqahqkaldslASKAEGLEKSLNSLETKRAGEAKQLAMAqkeadmLRNQL-SKTQEEL 239
Cdd:PRK10929 181 ESAALKAL--VDELELAQLS-------------ANNRQELARLRSELAKKRSQQLDAYLQA------LRNQLnSQRQREA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 240 EAQVTLVESLRKYVGEqvLPEFPSQEWELERkELLDTLKHlKEDRADL------QATVELLQVRvQSLThmlALQE---- 309
Cdd:PRK10929 240 ERALESTELLAEQSGD--LPKSIVAQFKINR-ELSQALNQ-QAQRMDLiasqqrQAASQTLQVR-QALN---TLREqsqw 311
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732428761 310 --------EELTRKIQPLdplePEFPKKcRSLLRNwrekvfalMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQ 380
Cdd:PRK10929 312 lgvsnalgEALRAQVARL----PEMPKP-QQLDTE--------MAQLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQ 377
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
509-677 |
2.12e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 509 LEQLREERNRLDAELQLSAhliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAA 588
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEA---KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 589 SLRQELTQQQEIYGQALQEKVAEVEtrlreqlsdtkrRLNEARREQAKAVVsLRQIQHKAtqEKERNQELRRLQDEArKE 668
Cdd:PRK12704 121 QKQQELEKKEEELEELIEEQLQELE------------RISGLTAEEAKEIL-LEKVEEEA--RHEAAVLIKEIEEEA-KE 184
|
....*....
gi 1732428761 669 EGQRLTRRV 677
Cdd:PRK12704 185 EADKKAKEI 193
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
177-386 |
2.13e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 177 EQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQ 256
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 257 V-----------LPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLdplepe 325
Cdd:COG4942 110 LralyrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL------ 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1732428761 326 fpKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRA 386
Cdd:COG4942 184 --EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
483-640 |
2.60e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 483 ALAQLRVE-SSPPSEaappLDtDLSVELEQLREERNRLdaelqlsahliqqevgrAREQGEVERRRLievaQQLEQELQR 561
Cdd:COG0542 398 AAARVRMEiDSKPEE----LD-ELERRLEQLEIEKEAL-----------------KKEQDEASFERL----AELRDELAE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 562 AQESLAsvgqQLEAARRGQQESTEEAASLRQELTQQqeiYGQ--ALQEKVAEVETRLREQLSDTKRRLNEarrEQAKAVV 639
Cdd:COG0542 452 LEEELE----ALKARWEAEKELIEEIQELKEELEQR---YGKipELEKELAELEEELAELAPLLREEVTE---EDIAEVV 521
|
.
gi 1732428761 640 S 640
Cdd:COG0542 522 S 522
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
497-643 |
2.88e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 497 AAPPLDTDLSVELeqLRE--ERNR-LDAELQLSAHLiqQEVGRAREQGEVERRRLIEVAQ---QLEQELQRAQESLASVG 570
Cdd:PHA03247 842 APPPLATSPQAIL--LREllQRGQdLEAPADLAAWL--ASLGDAAGQGLVERKELDELARaihKINERQVRRSSGLAELE 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 571 --QQLEAARRGQQES-------------------TEEAASLRQE-LTQQQEIYGQALQEKVA-EVETRLREQLSDTKRRL 627
Cdd:PHA03247 918 rfEALDAALRQELESeaafvpapgaapyadagglSPETRRLAEDaLRQAKAMAAAKLTDELSpEARERLRARARAIEAML 997
|
170
....*....|....*.
gi 1732428761 628 NEArREQAKAVVSLRQ 643
Cdd:PHA03247 998 EEA-RERAEAARAARE 1012
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
500-620 |
4.04e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.13 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 500 PLDTDLSVELEQLREERNRLDAELQLSAHLIQQevgrareqgevERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRG 579
Cdd:pfam09787 40 DSSTALTLELEELRQERDLLREEIQKLRGQIQQ-----------LRTELQELEAQQQEEAESSREQLQELEEQLATERSA 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1732428761 580 QQESTEEAASLRQE-------LTQQQEIYGQALQEKVAEVEtRLREQL 620
Cdd:pfam09787 109 RREAEAELERLQEElryleeeLRRSKATLQSRIKDREAEIE-KLRNQL 155
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
98-629 |
4.39e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 98 LQELRRLEEEVRSLRETslqqkmrLETQAVELDALAVAEKAGQAEAEGLRTALAGAeMVRKNLEEAKHKELEEIQSLHQE 177
Cdd:PRK02224 250 REELETLEAEIEDLRET-------IAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 178 QLSSLTQA---HQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVG 254
Cdd:PRK02224 322 RDEELRDRleeCRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 255 EQvlpefPSQEWELE--RKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLAlqEEELTRKIQPLDplepEFPKKCRs 332
Cdd:PRK02224 402 DA-----PVDLGNAEdfLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVE----GSPHVET- 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 333 lLRNWREKVFALMVQLKAQDLQHRDSTSQLR--IQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQ---ME 407
Cdd:PRK02224 470 -IEEDRERVEELEAELEDLEEEVEEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELReraAE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 408 LDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQavaripsLSNRLSYAVRKVHTIKGLMARKVALAQL 487
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-------IRTLLAAIADAEDEIERLREKREALAEL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 488 RVESSppseaappldtdlsvelEQLREERNRLDaelQLSAHLIQQEVGRAREqgevERRRLIEVAQQLEQELQRAQESLA 567
Cdd:PRK02224 622 NDERR-----------------ERLAEKRERKR---ELEAEFDEARIEEARE----DKERAEEYLEQVEEKLDELREERD 677
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1732428761 568 SvgqqLEAARRGQQESTEEAASLRQELTQQQE-------IYGQA--LQEKVAEVETRLREQLSDT-KRRLNE 629
Cdd:PRK02224 678 D----LQAEIGAVENELEELEELRERREALENrvealeaLYDEAeeLESMYGDLRAELRQRNVETlERMLNE 745
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
497-680 |
4.75e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 497 AAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGE--------------VERRRLIEVAQQLEQELQRA 562
Cdd:PRK04863 827 LAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEglsalnrllprlnlLADETLADRVEEIREQLDEA 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 563 QESLASVGQ------QLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLR----------EQLSDT--- 623
Cdd:PRK04863 907 EEAKRFVQQhgnalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRrahfsyedaaEMLAKNsdl 986
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1732428761 624 ----KRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDeARKEEGQRLTRRVQEL 680
Cdd:PRK04863 987 neklRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYD-AKRQMLQELKQELQDL 1046
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
86-467 |
5.56e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 86 ALSQQAELISRQLQELRRLEEEVRSLRE--TSLQQKMRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEA 163
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAelEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 164 KH------KELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLET-----KRAGEAKQLAMAQKEADMLRNQL 232
Cdd:COG4717 162 EEeleeleAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEeleeaQEELEELEEELEQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 233 SKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEEL 312
Cdd:COG4717 242 EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 313 TRKIQPLDPLEPEFPKKCRSLLRNWREKVFALmvqLKAQDLQHRDSTSQLRIQVAELQEQVTSQSqEQAILQRALQDKTA 392
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELL---REAEELEEELQLEELEQEIAALLAEAGVED-EEELRAALEQAEEY 397
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1732428761 393 QVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYA 467
Cdd:COG4717 398 QELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
504-693 |
6.37e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 504 DLSVELEQLREeRNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQES 583
Cdd:pfam17380 369 EIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERARE 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 584 TEEAASLRQELTQQQEIYGQALQEK-----VAEVETRLREQLSDTKRRLNEARREQAKAVVsLRQIQHKATQEKERNQEL 658
Cdd:pfam17380 448 MERVRLEEQERQQQVERLRQQEEERkrkklELEKEKRDRKRAEEQRRKILEKELEERKQAM-IEEERKRKLLEKEMEERQ 526
|
170 180 190
....*....|....*....|....*....|....*
gi 1732428761 659 RRLQDEARKEEGQRLTRRVQELERDKNLMLQRLLA 693
Cdd:pfam17380 527 KAIYEEERRREAEEERRKQQEMEERRRIQEQMRKA 561
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
515-636 |
6.70e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 39.44 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 515 ERNRLDAELQLSAHLIQQEVgrareQGEVERRRLIEVAQQLEQELQRAQESLasvGQQLEAARRG--QQESTEEAASLRQ 592
Cdd:TIGR01541 22 DEKSLQSRSDEIIALIKLEK-----LLEEAEQKALEALKKLAEATASIRAQN---KRQLDRFGLGdkQRERLDARLQIDR 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1732428761 593 ELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAK 636
Cdd:TIGR01541 94 TFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHA 137
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
551-682 |
6.77e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 551 VAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrLREQLSDTKRRLNEA 630
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE----KDERIERLERELSEA 453
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1732428761 631 RREQAKAVVSLRQIQHKatqeKERNQELRRLQDEARkEEGQRLTRRVQELER 682
Cdd:COG2433 454 RSEERREIRKDREISRL----DREIERLERELEEER-ERIEELKRKLERLKE 500
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
346-679 |
8.69e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.55 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 346 VQLKAQDLQHRDSTSQLRIQVAELQEQVtsqSQEQAILQRA--LQDKTAQVEVErmstkSLQMELDQAQEARR---RQEQ 420
Cdd:COG3096 846 SELERELAQHRAQEQQLRQQLDQLKEQL---QLLNKLLPQAnlLADETLADRLE-----ELREELDAAQEAQAfiqQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 421 QIASAEEQLkfvvgamnstqAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppSEAAPP 500
Cdd:COG3096 918 ALAQLEPLV-----------AVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSY--------EDAVGL 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 501 L--DTDLSvelEQLREernRLdaelqlsahliqqevgrarEQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARR 578
Cdd:COG3096 979 LgeNSDLN---EKLRA---RL-------------------EQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQ 1033
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 579 GQQEsteeaasLRQELtQQQEIYGQALQEKVAEVE-TRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQE 657
Cdd:COG3096 1034 TLQE-------LEQEL-EELGVQADAEAEERARIRrDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQ 1105
|
330 340
....*....|....*....|..
gi 1732428761 658 LRRlQDEARKEEGQRLTRRVQE 679
Cdd:COG3096 1106 ERE-QVVQAKAGWCAVLRLARD 1126
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
505-648 |
9.58e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 38.94 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 505 LSVELEQLREERNRLDAELQLsahliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAAR------- 577
Cdd:pfam00529 63 AEAQLAKAQAQVARLQAELDR-----LQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRvlapigg 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1732428761 578 -RGQQESTEEA------ASLRQELTQQQEIYGQALQEkVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKA 648
Cdd:pfam00529 138 iSRESLVTAGAlvaqaqANLLATVAQLDQIYVQITQS-AAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRA 214
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
157-282 |
9.77e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 39.24 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732428761 157 RKNLEEAKHKELEEIQSLHQ--EQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADML---RNQ 231
Cdd:pfam05667 323 VETEEELQQQREEELEELQEqlEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLpdaEEN 402
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1732428761 232 LSKTQEELEAQVTLVESLrkyvgeqvlpefpSQEWELERKELLDTLKHLKE 282
Cdd:pfam05667 403 IAKLQALVDASAQRLVEL-------------AGQWEKHRVPLIEEYRALKE 440
|
|
| |
