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Conserved domains on  [gi|1790089372|ref|NP_001364261|]
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target of Nesh-SH3 isoform 11 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
533-1073 4.85e-17

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 88.07  E-value: 4.85e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  533 ERPKTTHRPDAPQIQP---GSKPPKQLLPKPQTTAEPDMPPTKSVSEPVPfeteaPSMtIVPTTDIEPVTVRTEATVTTL 609
Cdd:PHA03247  2481 RRPAEARFPFAAGAAPdpgGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH-----PRM-LTWIRGLEELASDDAGDPPPP 2554
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  610 APKTSQRTRTRRPRPKHKTTPRP-----ETLQTKLDFGP--ITPGTSSAPTTTTKRTRRPHPKPKTTPHPEVPQTklaTK 682
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRPAPRPsepavTSRARRPDAPPqsARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP---SP 2631
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  683 TSKRTRPPRPRPKTTPSPQAPETKPVPATVLEPVTLRPEASTTLASKTSQRTRRPRLRTKTTP-----RPEAPESKPVPt 757
Cdd:PHA03247  2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltslaDPPPPPPTPEP- 2710
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  758 aelkpvtlRTETWVT-TQAPKTSQRTRRPRPKTKTTPSPevpqtklvPSTDLEPGTLRTEAPKTMVVTTVLEPDTFRTKF 836
Cdd:PHA03247  2711 --------APHALVSaTPLPPGPAAARQASPALPAAPAP--------PAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  837 PETTLAPKTQRTRRPRPRPKTTS--SPEVPQNKSVSVTGFEPVVHSTDAPGTTFALTELQTLILKPVTSPSLEmtesqpv 914
Cdd:PHA03247  2775 PAAGPPRRLTRPAVASLSESRESlpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------- 2847
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  915 sdvlesvtlSTESPKETIAPAKTDYVYPTAKAPlwPEEPKTEVVESITYVSEPP-ETTLETSPLPSQSITLPSPDEPQTE 993
Cdd:PHA03247  2848 ---------PSLPLGGSVAPGGDVRRRPPSRSP--AAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAPPP 2916
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  994 PAPKQTPRAPPKPKTSPRPRiPQTQPvPKVPQrvtakPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRGIP 1073
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPP-PRPQP-PLAPT-----TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP 2989
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
1301-1392 8.59e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 57.12  E-value: 8.59e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1301 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNP 1378
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79
                           90
                   ....*....|....
gi 1790089372 1379 LGEGPVSNTVAFST 1392
Cdd:cd00063     80 GGESPPSESVTVTT 93
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
900-1258 2.21e-09

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 62.40  E-value: 2.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  900 PVTSPSLEMTESQPVSDVLESvtlstESPKETIAPAKTDYVYPTAKaplwPEEPKTEVVESITYVSEPPEttletspLPS 979
Cdd:PTZ00449   520 PPKAPGDKEGEEGEHEDSKES-----DEPKEGGKPGETKEGEVGKK----PGPAKEHKPSKIPTLSKKPE-------FPK 583
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  980 QSitlPSPDEPQtEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAkPKTSPSPevsyttPAPKDVLLPHKPYPEV 1059
Cdd:PTZ00449   584 DP---KHPKDPE-EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES-PKSPKRP------PPPQRPSSPERPEGPK 652
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1060 SQSEPAPLETRGIPFIPMI--------SPSPSQEELQTTLEETDQSTQEPFTTKIPRTTELAKTTQAPhrfYTTVRPRTS 1131
Cdd:PTZ00449   653 IIKSPKPPKSPKPPFDPKFkekfyddyLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRP---LPPKLPRDE 729
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1132 DKPHIRPGVKQAPRPSGADRNVSVDSthptKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGIISSGPITtpPLRST 1211
Cdd:PTZ00449   730 EFPFEPIGDPDAEQPDDIEFFTPPEE----ERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDS--PSEHE 803
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1790089372 1212 PRPTGTplerietdikQPTVPASGEELENI----TDFSSSPTR-ETDPLGKP 1258
Cdd:PTZ00449   804 DKPPGD----------HPSLPKKRHRLDGLalstTDLESDAGRiAKDASGKI 845
PHA03247 super family cl33720
large tegument protein UL36; Provisional
257-601 2.38e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 2.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  257 DSAKSPEKAPlggvilvHLIIPGLNETTVKLPASLMFEISDALKTQLAKNETLALPAESKTPEVEKISARPTTVTPETVP 336
Cdd:PHA03247  2703 PPPPTPEPAP-------HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  337 RSTKP--TTSSALDVSETTLASSEKPW--IVPTAKISEDSKVLQPQTAPQQ-----TTSIPStpkrrPRPKPPRTKPERT 407
Cdd:PHA03247  2776 AAGPPrrLTRPAVASLSESRESLPSPWdpADPPAAVLAPAAALPPAASPAGplpppTSAQPT-----APPPPPGPPPPSL 2850
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  408 TSAGTITPKISKSPEPTWTTPAPgktqfislKPKIPLSPEVTH-TKPAPEPQTLLPSQSTIGPETPGTKPSTTlaprktk 486
Cdd:PHA03247  2851 PLGGSVAPGGDVRRRPPSRSPAA--------KPAAPARPPVRRlARPAVSRSTESFALPPDQPERPPQPQAPP------- 2915
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  487 rpgrrprprPRPKTTPSPEVPKSKPALEPATIQPEPLVPTTASKPSERPK-TTHRPDAPQIQPGSKP-PKQLLPKPQTTA 564
Cdd:PHA03247  2916 ---------PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAvPRFRVPQPAPSR 2986
                          330       340       350
                   ....*....|....*....|....*....|....*....
gi 1790089372  565 EPDMPPTKSV-SEPVP-FETEAPSMTIVPTTDIEPVTVR 601
Cdd:PHA03247  2987 EAPASSTPPLtGHSLSrVSSWASSLALHEETDPPPVSLK 3025
FN3 super family cl21522
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
116-195 5.38e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


The actual alignment was detected with superfamily member pfam00041:

Pssm-ID: 473895 [Multi-domain]  Cd Length: 85  Bit Score: 40.48  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPND-RFYTIRYREKDKEKKWIFQICPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71

                   ...
gi 1790089372  193 GVK 195
Cdd:pfam00041   72 RVQ 74
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
533-1073 4.85e-17

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 88.07  E-value: 4.85e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  533 ERPKTTHRPDAPQIQP---GSKPPKQLLPKPQTTAEPDMPPTKSVSEPVPfeteaPSMtIVPTTDIEPVTVRTEATVTTL 609
Cdd:PHA03247  2481 RRPAEARFPFAAGAAPdpgGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH-----PRM-LTWIRGLEELASDDAGDPPPP 2554
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  610 APKTSQRTRTRRPRPKHKTTPRP-----ETLQTKLDFGP--ITPGTSSAPTTTTKRTRRPHPKPKTTPHPEVPQTklaTK 682
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRPAPRPsepavTSRARRPDAPPqsARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP---SP 2631
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  683 TSKRTRPPRPRPKTTPSPQAPETKPVPATVLEPVTLRPEASTTLASKTSQRTRRPRLRTKTTP-----RPEAPESKPVPt 757
Cdd:PHA03247  2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltslaDPPPPPPTPEP- 2710
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  758 aelkpvtlRTETWVT-TQAPKTSQRTRRPRPKTKTTPSPevpqtklvPSTDLEPGTLRTEAPKTMVVTTVLEPDTFRTKF 836
Cdd:PHA03247  2711 --------APHALVSaTPLPPGPAAARQASPALPAAPAP--------PAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  837 PETTLAPKTQRTRRPRPRPKTTS--SPEVPQNKSVSVTGFEPVVHSTDAPGTTFALTELQTLILKPVTSPSLEmtesqpv 914
Cdd:PHA03247  2775 PAAGPPRRLTRPAVASLSESRESlpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------- 2847
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  915 sdvlesvtlSTESPKETIAPAKTDYVYPTAKAPlwPEEPKTEVVESITYVSEPP-ETTLETSPLPSQSITLPSPDEPQTE 993
Cdd:PHA03247  2848 ---------PSLPLGGSVAPGGDVRRRPPSRSP--AAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAPPP 2916
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  994 PAPKQTPRAPPKPKTSPRPRiPQTQPvPKVPQrvtakPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRGIP 1073
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPP-PRPQP-PLAPT-----TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP 2989
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
1301-1392 8.59e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 57.12  E-value: 8.59e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1301 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNP 1378
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79
                           90
                   ....*....|....
gi 1790089372 1379 LGEGPVSNTVAFST 1392
Cdd:cd00063     80 GGESPPSESVTVTT 93
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
900-1258 2.21e-09

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 62.40  E-value: 2.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  900 PVTSPSLEMTESQPVSDVLESvtlstESPKETIAPAKTDYVYPTAKaplwPEEPKTEVVESITYVSEPPEttletspLPS 979
Cdd:PTZ00449   520 PPKAPGDKEGEEGEHEDSKES-----DEPKEGGKPGETKEGEVGKK----PGPAKEHKPSKIPTLSKKPE-------FPK 583
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  980 QSitlPSPDEPQtEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAkPKTSPSPevsyttPAPKDVLLPHKPYPEV 1059
Cdd:PTZ00449   584 DP---KHPKDPE-EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES-PKSPKRP------PPPQRPSSPERPEGPK 652
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1060 SQSEPAPLETRGIPFIPMI--------SPSPSQEELQTTLEETDQSTQEPFTTKIPRTTELAKTTQAPhrfYTTVRPRTS 1131
Cdd:PTZ00449   653 IIKSPKPPKSPKPPFDPKFkekfyddyLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRP---LPPKLPRDE 729
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1132 DKPHIRPGVKQAPRPSGADRNVSVDSthptKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGIISSGPITtpPLRST 1211
Cdd:PTZ00449   730 EFPFEPIGDPDAEQPDDIEFFTPPEE----ERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDS--PSEHE 803
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1790089372 1212 PRPTGTplerietdikQPTVPASGEELENI----TDFSSSPTR-ETDPLGKP 1258
Cdd:PTZ00449   804 DKPPGD----------HPSLPKKRHRLDGLalstTDLESDAGRiAKDASGKI 845
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
1302-1382 1.39e-07

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 50.31  E-value: 1.39e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  1302 PPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV-ISRENGSFSGKNKSIQMTNQTFS-TVENLKPNTSYEFQVKPKNPL 1379
Cdd:smart00060    3 PPSNLRVTDVT--STSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSyTLTGLKPGTEYEFRVRAVNGA 80

                    ...
gi 1790089372  1380 GEG 1382
Cdd:smart00060   81 GEG 83
PHA03247 PHA03247
large tegument protein UL36; Provisional
257-601 2.38e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 2.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  257 DSAKSPEKAPlggvilvHLIIPGLNETTVKLPASLMFEISDALKTQLAKNETLALPAESKTPEVEKISARPTTVTPETVP 336
Cdd:PHA03247  2703 PPPPTPEPAP-------HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  337 RSTKP--TTSSALDVSETTLASSEKPW--IVPTAKISEDSKVLQPQTAPQQ-----TTSIPStpkrrPRPKPPRTKPERT 407
Cdd:PHA03247  2776 AAGPPrrLTRPAVASLSESRESLPSPWdpADPPAAVLAPAAALPPAASPAGplpppTSAQPT-----APPPPPGPPPPSL 2850
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  408 TSAGTITPKISKSPEPTWTTPAPgktqfislKPKIPLSPEVTH-TKPAPEPQTLLPSQSTIGPETPGTKPSTTlaprktk 486
Cdd:PHA03247  2851 PLGGSVAPGGDVRRRPPSRSPAA--------KPAAPARPPVRRlARPAVSRSTESFALPPDQPERPPQPQAPP------- 2915
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  487 rpgrrprprPRPKTTPSPEVPKSKPALEPATIQPEPLVPTTASKPSERPK-TTHRPDAPQIQPGSKP-PKQLLPKPQTTA 564
Cdd:PHA03247  2916 ---------PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAvPRFRVPQPAPSR 2986
                          330       340       350
                   ....*....|....*....|....*....|....*....
gi 1790089372  565 EPDMPPTKSV-SEPVP-FETEAPSMTIVPTTDIEPVTVR 601
Cdd:PHA03247  2987 EAPASSTPPLtGHSLSrVSSWASSLALHEETDPPPVSLK 3025
fn3 pfam00041
Fibronectin type III domain;
1302-1385 4.02e-05

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 43.56  E-value: 4.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1302 PPTNLTVVTVEgcPSFVILDWEKP--LNDTVTEYEVISRENGSFSGKNkSIQMTNQTFS-TVENLKPNTSYEFQVKPKNP 1378
Cdd:pfam00041    2 APSNLTVTDVT--STSLTVSWTPPpdGNGPITGYEVEYRPKNSGEPWN-EITVPGTTTSvTLTGLKPGTEYEVRVQAVNG 78

                   ....*..
gi 1790089372 1379 LGEGPVS 1385
Cdd:pfam00041   79 GGEGPPS 85
fn3 pfam00041
Fibronectin type III domain;
116-195 5.38e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 40.48  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPND-RFYTIRYREKDKEKKWIFQICPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71

                   ...
gi 1790089372  193 GVK 195
Cdd:pfam00041   72 RVQ 74
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
117-195 5.53e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 40.29  E-value: 5.53e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372   117 PLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPNDRFYTIRYREKDKEKKWIFQICPA----TETIVENLKPNTVYEF 192
Cdd:smart00060    4 PSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTEYEF 72

                    ...
gi 1790089372   193 GVK 195
Cdd:smart00060   73 RVR 75
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
720-1046 6.55e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 44.18  E-value: 6.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  720 PEASTTLASKTSQRT-RRPRLRTKTTPRPEAPESKPVPTAELKPVTLRTETWVTTQAPKTSQRTRRPRPKTKTTPSPEVP 798
Cdd:pfam17823   66 APAPVTLTKGTSAAHlNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAP 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  799 QTKlVPSTdlePGTLRTEAPKTMVVTTVLEPDTFRTKFPETTLAPKTQRTRRPRPRPKTTS----SPEVPQNKSVSVTGF 874
Cdd:pfam17823  146 RAA-ACRA---NASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSApatlTPARGISTAATATGH 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  875 EPVVHSTDAPGTTFALTELQTLILKPVTSPSLEMTESQPVSDVLESVTLSTESP-KETIAPAKTDYVYPTAKAPLWPEEP 953
Cdd:pfam17823  222 PAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPhARRLSPAKHMPSDTMARNPAAPMGA 301
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  954 KTEVVESITYVSEPPETTlETSPLPSQSITLPSPDEPQ-----------TEPAPKQTPRAPPKP--KTSPRPRI----PQ 1016
Cdd:pfam17823  302 QAQGPIIQVSTDQPVHNT-AGEPTPSPSNTTLEPNTPKsvastnlavvtTTKAQAKEPSASPVPvlHTSMIPEVeatsPT 380
                          330       340       350
                   ....*....|....*....|....*....|
gi 1790089372 1017 TQPVPKVPQRVTAKPKTSPSPEVSYTTPAP 1046
Cdd:pfam17823  381 TQPSPLLPTQGAAGPGILLAPEQVATEATA 410
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
1296-1440 7.28e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 44.22  E-value: 7.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1296 TSPPQnPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV--ISRENGSFSGKNKSIqmtNQTFSTVENLKPNTSYEFQV 1373
Cdd:COG3401    324 LTPPA-APSGLTATAVG--SSSITLSWTASSDADVTGYNVyrSTSGGGTYTKIAETV---TTTSYTDTGLTPGTTYYYKV 397
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1790089372 1374 KPKNPLG-EGPVSNTVAFSTESADPRVSEPVSAGRDAIWTERPFNSDSYSECKGKQYVKRTWYKKFVG 1440
Cdd:COG3401    398 TAVDAAGnESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTG 465
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
1093-1397 9.81e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 43.84  E-value: 9.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1093 ETDQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHIRPGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLP 1172
Cdd:COG3401     23 VNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGS 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1173 PRPTHPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRET 1252
Cdd:COG3401    103 VGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVAT 182
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1253 DPLGKPRFKGPHVRYIQKPDNS----PCSITDSVKRFPKEEATEGNATSPPqNPPTNLTVVTVEgcPSFVILDWEKPLND 1328
Cdd:COG3401    183 TSLTVTSTTLVDGGGDIEPGTTyyyrVAATDTGGESAPSNEVSVTTPTTPP-SAPTGLTATADT--PGSVTLSWDPVTES 259
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1329 TVTEYEvISRENGSfSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNPLG-EGPVSNTVAFSTESADP 1397
Cdd:COG3401    260 DATGYR-VYRSNSG-DGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPP 327
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
872-1066 1.72e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 42.91  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  872 TGFEPVVHSTDAPGTTFALTELQTLILKPVTSPSLEMTESQPVSDVLESVTLSTESPKETIAPAKTDYVYPTAKAPLWPE 951
Cdd:COG3266    159 EEQLLLLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAE 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  952 EPKTEVVESITYV----SEPPETTLETSPLPSQsitLPSPDEPQTEPAPKQTPRAPPKPKTSPrpripQTQPVPKVPQRV 1027
Cdd:COG3266    239 VLTARLVLLLLIIgsalKAPSQASSASAPATTS---LGEQQEVSLPPAVAAQPAAAAAAQPSA-----VALPAAPAAAAA 310
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1790089372 1028 TAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAP 1066
Cdd:COG3266    311 AAAPAEAAAPQPTAAKPVVTETAAPAAPAPEAAAAAAAP 349
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
116-195 2.40e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 38.63  E-value: 2.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  116 KPLQLVVGTLTPSSVFLSWgfliNPHHDWTLPSHcpndrFYTIRYREKDKE--KKWIFQICPATETIVENLKPNTVYEFG 193
Cdd:cd00063      3 PPTNLRVTDVTSTSVTLSW----TPPEDDGGPIT-----GYVVEYREKGSGdwKEVEVTPGSETSYTLTGLKPGTEYEFR 73

                   ..
gi 1790089372  194 VK 195
Cdd:cd00063     74 VR 75
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
533-1073 4.85e-17

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 88.07  E-value: 4.85e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  533 ERPKTTHRPDAPQIQP---GSKPPKQLLPKPQTTAEPDMPPTKSVSEPVPfeteaPSMtIVPTTDIEPVTVRTEATVTTL 609
Cdd:PHA03247  2481 RRPAEARFPFAAGAAPdpgGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH-----PRM-LTWIRGLEELASDDAGDPPPP 2554
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  610 APKTSQRTRTRRPRPKHKTTPRP-----ETLQTKLDFGP--ITPGTSSAPTTTTKRTRRPHPKPKTTPHPEVPQTklaTK 682
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRPAPRPsepavTSRARRPDAPPqsARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP---SP 2631
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  683 TSKRTRPPRPRPKTTPSPQAPETKPVPATVLEPVTLRPEASTTLASKTSQRTRRPRLRTKTTP-----RPEAPESKPVPt 757
Cdd:PHA03247  2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltslaDPPPPPPTPEP- 2710
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  758 aelkpvtlRTETWVT-TQAPKTSQRTRRPRPKTKTTPSPevpqtklvPSTDLEPGTLRTEAPKTMVVTTVLEPDTFRTKF 836
Cdd:PHA03247  2711 --------APHALVSaTPLPPGPAAARQASPALPAAPAP--------PAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  837 PETTLAPKTQRTRRPRPRPKTTS--SPEVPQNKSVSVTGFEPVVHSTDAPGTTFALTELQTLILKPVTSPSLEmtesqpv 914
Cdd:PHA03247  2775 PAAGPPRRLTRPAVASLSESRESlpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP------- 2847
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  915 sdvlesvtlSTESPKETIAPAKTDYVYPTAKAPlwPEEPKTEVVESITYVSEPP-ETTLETSPLPSQSITLPSPDEPQTE 993
Cdd:PHA03247  2848 ---------PSLPLGGSVAPGGDVRRRPPSRSP--AAKPAAPARPPVRRLARPAvSRSTESFALPPDQPERPPQPQAPPP 2916
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  994 PAPKQTPRAPPKPKTSPRPRiPQTQPvPKVPQrvtakPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRGIP 1073
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPP-PRPQP-PLAPT-----TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP 2989
PHA03247 PHA03247
large tegument protein UL36; Provisional
506-1060 1.17e-15

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 83.45  E-value: 1.17e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  506 VPKSKPALEPatiqPEPLVPTTASKPSERPKTThRPDAPQIQPGSkPPKQLLPKPQTTAEPDMPPTKSVSEPVPFETEAP 585
Cdd:PHA03247  2568 VPPPRPAPRP----SEPAVTSRARRPDAPPQSA-RPRAPVDDRGD-PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPH 2641
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  586 SMTIVPttdiEPVTVRTEATVTTLA-PKTSQRTRTRRPRPKHKTTPRPETLQTkldfgPITPGTSSApttttkRTRRPHP 664
Cdd:PHA03247  2642 PPPTVP----PPERPRDDPAPGRVSrPRRARRLGRAAQASSPPQRPRRRAARP-----TVGSLTSLA------DPPPPPP 2706
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  665 KPKTTPHPEVPQTKLATKTSKRTRPPRPRpkttpsPQAPETKPVPATVLEPVTLRPeasttlasktsqrtrrprlrtktT 744
Cdd:PHA03247  2707 TPEPAPHALVSATPLPPGPAAARQASPAL------PAAPAPPAVPAGPATPGGPAR-----------------------P 2757
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  745 PRPEAPESKPVPTAELKPVTlrtetwvTTQAPKTSQRTRRPRPKTKTTPSPEVPQTKLVPSTDLEPGTLRTEAPKtmvvt 824
Cdd:PHA03247  2758 ARPPTTAGPPAPAPPAAPAA-------GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA----- 2825
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  825 tvlepdtfrtkfpeTTLAPKTQRTRRPRPRPKTTSSPEVPQNKSVsvtgfepvvhstdAPGTTFAltelqtlilkpvtsp 904
Cdd:PHA03247  2826 --------------GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV-------------APGGDVR--------------- 2863
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  905 slemtESQPVSDVLESVTLSTESPKETIA-PAKTDYVYPTAKAPLWPEEPKTevvesityvSEPPETTLETSPLPSQSIT 983
Cdd:PHA03247  2864 -----RRPPSRSPAAKPAAPARPPVRRLArPAVSRSTESFALPPDQPERPPQ---------PQAPPPPQPQPQPPPPPQP 2929
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1790089372  984 LPSPdEPQTEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVS 1060
Cdd:PHA03247  2930 QPPP-PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005
PHA03247 PHA03247
large tegument protein UL36; Provisional
332-809 1.13e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 70.35  E-value: 1.13e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  332 PETVPRSTKPTTSSALDVSETTLASSEKPWIVPTAKISEDSKVLQPQTAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAG 411
Cdd:PHA03247  2560 PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD 2639
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  412 TITPKISKSPEPTWTTPAPGKTQF-----ISLKPKIPLSPEVTHTKPAPEPqTLLPSQSTIGPETPGTKPSTTLAPRKTK 486
Cdd:PHA03247  2640 PHPPPTVPPPERPRDDPAPGRVSRprrarRLGRAAQASSPPQRPRRRAARP-TVGSLTSLADPPPPPPTPEPAPHALVSA 2718
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  487 RPGRRPRPRPRPKTTPSPEVPKSKPAlePATiqpePLVPTTASKPSERPKTTHRPD-APQIQPGSKPPKQLLPKPQTTAE 565
Cdd:PHA03247  2719 TPLPPGPAAARQASPALPAAPAPPAV--PAG----PATPGGPARPARPPTTAGPPApAPPAAPAAGPPRRLTRPAVASLS 2792
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  566 PDMPPTKSVSEPVPFETEAPSMTIVPTTDIEPVT-VRTEATVTTLAPKTSQRTRTRRPRPKHKTTP------RPETLQTk 638
Cdd:PHA03247  2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGpLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrrRPPSRSP- 2871
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  639 ldfgPITPGTSSAPTTTTKRTRRPHPKPKTTPHPEVPQTKLATKTSKRTRPPRPRPKTTPSPQ-APETKPVPatvlePVT 717
Cdd:PHA03247  2872 ----AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpPPPPPPRP-----QPP 2942
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  718 LRPEASTTLASKTSQRTRRPRLRTKTTPRPEAPESKPVPTAELKPvtlrtetwvtTQAPKTSQRTRRPRPKT-------- 789
Cdd:PHA03247  2943 LAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE----------APASSTPPLTGHSLSRVsswassla 3012
                          490       500
                   ....*....|....*....|...
gi 1790089372  790 ---KTTPSPEVPQTKLVPSTDLE 809
Cdd:PHA03247  3013 lheETDPPPVSLKQTLWPPDDTE 3035
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
1301-1392 8.59e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 57.12  E-value: 8.59e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1301 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNP 1378
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79
                           90
                   ....*....|....
gi 1790089372 1379 LGEGPVSNTVAFST 1392
Cdd:cd00063     80 GGESPPSESVTVTT 93
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
900-1258 2.21e-09

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 62.40  E-value: 2.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  900 PVTSPSLEMTESQPVSDVLESvtlstESPKETIAPAKTDYVYPTAKaplwPEEPKTEVVESITYVSEPPEttletspLPS 979
Cdd:PTZ00449   520 PPKAPGDKEGEEGEHEDSKES-----DEPKEGGKPGETKEGEVGKK----PGPAKEHKPSKIPTLSKKPE-------FPK 583
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  980 QSitlPSPDEPQtEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAkPKTSPSPevsyttPAPKDVLLPHKPYPEV 1059
Cdd:PTZ00449   584 DP---KHPKDPE-EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES-PKSPKRP------PPPQRPSSPERPEGPK 652
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1060 SQSEPAPLETRGIPFIPMI--------SPSPSQEELQTTLEETDQSTQEPFTTKIPRTTELAKTTQAPhrfYTTVRPRTS 1131
Cdd:PTZ00449   653 IIKSPKPPKSPKPPFDPKFkekfyddyLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRP---LPPKLPRDE 729
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1132 DKPHIRPGVKQAPRPSGADRNVSVDSthptKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGIISSGPITtpPLRST 1211
Cdd:PTZ00449   730 EFPFEPIGDPDAEQPDDIEFFTPPEE----ERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDS--PSEHE 803
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1790089372 1212 PRPTGTplerietdikQPTVPASGEELENI----TDFSSSPTR-ETDPLGKP 1258
Cdd:PTZ00449   804 DKPPGD----------HPSLPKKRHRLDGLalstTDLESDAGRiAKDASGKI 845
PHA03247 PHA03247
large tegument protein UL36; Provisional
310-817 1.13e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 1.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  310 ALPAESKTPEVEKISARPTT-VTPETVPRSTKPTTSSALDV-------SETTLASSEKPWIVPTAKISEDSKVLQP---Q 378
Cdd:PHA03247  2581 AVTSRARRPDAPPQSARPRApVDDRGDPRGPAPPSPLPPDThapdpppPSPSPAANEPDPHPPPTVPPPERPRDDPapgR 2660
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  379 TAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPkiSKSPEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPePQ 458
Cdd:PHA03247  2661 VSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTS--LADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL-PA 2737
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  459 TLLPSQSTIGPETPGT-----KPSTTLAPrkTKRPGRRPRPRPRPKTTPSPEVPKSKPALEPATIQPEPLVPTTASKPSE 533
Cdd:PHA03247  2738 APAPPAVPAGPATPGGparpaRPPTTAGP--PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  534 RPKTTHRPDAPQIQPGSKPPKQLLPKPQTTAEPDMPPTKSVSEPVPFETEAPSMTIVPTtdiepVTVRTEATVTTLA-PK 612
Cdd:PHA03247  2816 AALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAK-----PAAPARPPVRRLArPA 2890
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  613 TSQRTRTRRPRPKHKTTPRPETLQTKldfgPITPGTSSAPttttkrtRRPHPKPKTTPHPEvPQTKLATKTSKRTRPPRP 692
Cdd:PHA03247  2891 VSRSTESFALPPDQPERPPQPQAPPP----PQPQPQPPPP-------PQPQPPPPPPPRPQ-PPLAPTTDPAGAGEPSGA 2958
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  693 RPKTTPSPQAPETKPVPATVLEPVTLRPEASttlASKTSQRTRRPRLRTKTTPRPEAPESKPVPtaelKPVTLRTETWV- 771
Cdd:PHA03247  2959 VPQPWLGALVPGRVAVPRFRVPQPAPSREAP---ASSTPPLTGHSLSRVSSWASSLALHEETDP----PPVSLKQTLWPp 3031
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*...
gi 1790089372  772 --TTQAPKTSQRTRRPRPKTKTTPSPEVPQTKLVPSTDLEPGTLRTEA 817
Cdd:PHA03247  3032 ddTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGA 3079
PRK10263 PRK10263
DNA translocase FtsK; Provisional
511-1086 2.49e-08

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 58.94  E-value: 2.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  511 PALEPATIQPEPLVPTTASKPSERPKTTHRPDAPQiqpgskpPKQLLPKPQTtAEPDMPPTKSVSEPVPFETE--APSMT 588
Cdd:PRK10263   342 QTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPA-------PEGYPQQSQY-AQPAVQYNEPLQQPVQPQQPyyAPAAE 413
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  589 IVPTTDIEPVTVRTEATVTTLAPKTSQRTRTRRPRPKhkttPRPETLQTKLDFGPITPGTSSAPTTTTKRTRRPHPKPKT 668
Cdd:PRK10263   414 QPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAE----EQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  669 T-PHPEVPQTKLATKTSKRTRPPRPRPKTTPSPQAPETKPVPATVLEPVTLRPEASTTLASKTSqrtrrprlrtkttPRP 747
Cdd:PRK10263   490 VePEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVP-------------PVE 556
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  748 EAPESKPVpTAELKPVTLRTETWVTTQAPKTSQRTR-RPRPKTKTTPSPEVPQtklvpstdlepgtlrteaPKTMVVTTV 826
Cdd:PRK10263   557 AAAAVSPL-ASGVKKATLATGAAATVAAPVFSLANSgGPRPQVKEGIGPQLPR------------------PKRIRVPTR 617
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  827 LEPDTFRTKFPETTLAPKTQRTRRPRPRPKTTS----------SPEVPQNKSVSVTGFEPVVHSTDAPGTT--------- 887
Cdd:PRK10263   618 RELASYGIKLPSQRAAEEKAREAQRNQYDSGDQynddeidamqQDELARQFAQTQQQRYGEQYQHDVPVNAedadaaaea 697
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  888 -----FALTELQTLILKPVTSP---SLEMTESQPVSDVLEsvtlstESPKEtiaPAKTDYVYPTAKaPLWPEEPKTEVVE 959
Cdd:PRK10263   698 elarqFAQTQQQRYSGEQPAGAnpfSLDDFEFSPMKALLD------DGPHE---PLFTPIVEPVQQ-PQQPVAPQQQYQQ 767
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  960 SITYVSEPPETTLETSPLPSQsitlPSPDEPQTEPAPKQTPRAPPKPkTSPRPRIPQTQPvPKVPQRVTAKPKTSPSpev 1039
Cdd:PRK10263   768 PQQPVAPQPQYQQPQQPVAPQ----PQYQQPQQPVAPQPQYQQPQQP-VAPQPQYQQPQQ-PVAPQPQYQQPQQPVA--- 838
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 1790089372 1040 syttPAPKDVLLpHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEE 1086
Cdd:PRK10263   839 ----PQPQDTLL-HPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVE 880
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
1302-1382 1.39e-07

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 50.31  E-value: 1.39e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  1302 PPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV-ISRENGSFSGKNKSIQMTNQTFS-TVENLKPNTSYEFQVKPKNPL 1379
Cdd:smart00060    3 PPSNLRVTDVT--STSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSyTLTGLKPGTEYEFRVRAVNGA 80

                    ...
gi 1790089372  1380 GEG 1382
Cdd:smart00060   81 GEG 83
PHA03247 PHA03247
large tegument protein UL36; Provisional
663-1160 3.96e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 3.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  663 HPKPKTTPHPEVPQTKLATKTSKRTRPPRPRPKTTPSPQAPETKPvPATVLEPVTLRPEA----STTLASKTSQRTRRPR 738
Cdd:PHA03247  2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILP-DEPVGEPVHPRMLTwirgLEELASDDAGDPPPPL 2555
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  739 LRTKTTPRPE--APESKPVPTAELKPVTLRTEtwvTTQAPKTSQRTRRPR-----PKTKTTPSPEVPQTKLVPSTDLEPG 811
Cdd:PHA03247  2556 PPAAPPAAPDrsVPPPRPAPRPSEPAVTSRAR---RPDAPPQSARPRAPVddrgdPRGPAPPSPLPPDTHAPDPPPPSPS 2632
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  812 TLRTEAPKTMVVTTVLEPDTFRTKFPETTLAPKtqRTRRPRPRPKTTSSPEVPQNKSV-----SVTGF----------EP 876
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR--RARRLGRAAQASSPPQRPRRRAArptvgSLTSLadpppppptpEP 2710
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  877 VVHSTDA-----PGTTFALTELQTLILKPVTSPSLEmTESQPVSDVLESVTLSTESPKETIAPAktdyVYPTAKAPLWPE 951
Cdd:PHA03247  2711 APHALVSatplpPGPAAARQASPALPAAPAPPAVPA-GPATPGGPARPARPPTTAGPPAPAPPA----APAAGPPRRLTR 2785
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  952 EPKTEVVESITYVSEPPETTLETSPLPSQSITLPSPDEPQT--EPAPKQTPRAPPKPKTSPRPRIPQTQPV-PKVPqrVT 1028
Cdd:PHA03247  2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplPPPTSAQPTAPPPPPGPPPPSLPLGGSVaPGGD--VR 2863
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1029 AKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAPletrgipfiPMISPSPSQEELQTTLEETDQSTQEPFTTKIPR 1108
Cdd:PHA03247  2864 RRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP---------PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1790089372 1109 TTELAKTTQAPHRFYTTVRPRTSDKP-----HIRPGVKQAPR---PSGAD-RNVSVDSTHP 1160
Cdd:PHA03247  2935 PPPRPQPPLAPTTDPAGAGEPSGAVPqpwlgALVPGRVAVPRfrvPQPAPsREAPASSTPP 2995
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
405-813 8.12e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 50.84  E-value: 8.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  405 ERTTSAGTITPKISKSPEPTWTT-----PAPGKTQFISLKPKIPLSPEVTHTKPAP-EPQTLLPSQSTIGPETPGTKPST 478
Cdd:PTZ00449   533 EHEDSKESDEPKEGGKPGETKEGevgkkPGPAKEHKPSKIPTLSKKPEFPKDPKHPkDPEEPKKPKRPRSAQRPTRPKSP 612
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  479 TLaprktkrpgrrprprprpktTPSPEVPKSKPALEPATIQPEPLVPTtaskpseRPKTTHRPDAPQIQPGSKPPKQllP 558
Cdd:PTZ00449   613 KL--------------------PELLDIPKSPKRPESPKSPKRPPPPQ-------RPSSPERPEGPKIIKSPKPPKS--P 663
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  559 KPqttaepdmpptksvsepvPFEteaPSMTIVPTTDIEPVTVRTEATVTTLAPKTSQRTRTRRPRPKHKTTPR------P 632
Cdd:PTZ00449   664 KP------------------PFD---PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFttprplP 722
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  633 ETLQTKLDFGPITPGTSSAPTTTTKRTRRPhPKPKTTPHPEVPQTKLATKTSKRTRPPRPRPKTTPSPQAPETKPvpatv 712
Cdd:PTZ00449   723 PKLPRDEEFPFEPIGDPDAEQPDDIEFFTP-PEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRP----- 796
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  713 LEPVTLRPEASTTLASKTSQRTRRPRLRTKTTPRpEAPESKPVPTAELKPVTLR-------------------------- 766
Cdd:PTZ00449   797 DSPSEHEDKPPGDHPSLPKKRHRLDGLALSTTDL-ESDAGRIAKDASGKIVKLKrsksfddlttveeaeemgaearkivv 875
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1790089372  767 ---------TETWVTTQAPKTSQRTRRPRPKTKTTPSPEVPQTKLVPSTDLEPGTL 813
Cdd:PTZ00449   876 dddgteaddEDTHPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPKKPDSAFIPSII 931
PHA03247 PHA03247
large tegument protein UL36; Provisional
257-601 2.38e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 2.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  257 DSAKSPEKAPlggvilvHLIIPGLNETTVKLPASLMFEISDALKTQLAKNETLALPAESKTPEVEKISARPTTVTPETVP 336
Cdd:PHA03247  2703 PPPPTPEPAP-------HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  337 RSTKP--TTSSALDVSETTLASSEKPW--IVPTAKISEDSKVLQPQTAPQQ-----TTSIPStpkrrPRPKPPRTKPERT 407
Cdd:PHA03247  2776 AAGPPrrLTRPAVASLSESRESLPSPWdpADPPAAVLAPAAALPPAASPAGplpppTSAQPT-----APPPPPGPPPPSL 2850
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  408 TSAGTITPKISKSPEPTWTTPAPgktqfislKPKIPLSPEVTH-TKPAPEPQTLLPSQSTIGPETPGTKPSTTlaprktk 486
Cdd:PHA03247  2851 PLGGSVAPGGDVRRRPPSRSPAA--------KPAAPARPPVRRlARPAVSRSTESFALPPDQPERPPQPQAPP------- 2915
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  487 rpgrrprprPRPKTTPSPEVPKSKPALEPATIQPEPLVPTTASKPSERPK-TTHRPDAPQIQPGSKP-PKQLLPKPQTTA 564
Cdd:PHA03247  2916 ---------PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAvPRFRVPQPAPSR 2986
                          330       340       350
                   ....*....|....*....|....*....|....*....
gi 1790089372  565 EPDMPPTKSV-SEPVP-FETEAPSMTIVPTTDIEPVTVR 601
Cdd:PHA03247  2987 EAPASSTPPLtGHSLSrVSSWASSLALHEETDPPPVSLK 3025
fn3 pfam00041
Fibronectin type III domain;
1302-1385 4.02e-05

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 43.56  E-value: 4.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1302 PPTNLTVVTVEgcPSFVILDWEKP--LNDTVTEYEVISRENGSFSGKNkSIQMTNQTFS-TVENLKPNTSYEFQVKPKNP 1378
Cdd:pfam00041    2 APSNLTVTDVT--STSLTVSWTPPpdGNGPITGYEVEYRPKNSGEPWN-EITVPGTTTSvTLTGLKPGTEYEVRVQAVNG 78

                   ....*..
gi 1790089372 1379 LGEGPVS 1385
Cdd:pfam00041   79 GGEGPPS 85
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
969-1063 5.71e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.88  E-value: 5.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  969 ETTLETSPLPSQ-SITLPSPDEPQTEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPK 1047
Cdd:PRK14950   357 EALLVPVPAPQPaKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436
                           90
                   ....*....|....*.
gi 1790089372 1048 DVLLPHKPYPEVSQSE 1063
Cdd:PRK14950   437 PVDEKPKYTPPAPPKE 452
PRK10263 PRK10263
DNA translocase FtsK; Provisional
943-1214 5.87e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 48.16  E-value: 5.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  943 TAKAPLW--PEEPKTEVVESITYVSEPPETTLETSPLPSqsitlPSPDEPQTEPAPKQTPRAPPKPKTSPRPRIPQTQPV 1020
Cdd:PRK10263   327 TTATQSWaaPVEPVTQTPPVASVDVPPAQPTVAWQPVPG-----PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1021 PkvPQRVTAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQ---SEPAPLETRGIPFIPMISPSPSQEELQTTLEET--- 1094
Cdd:PRK10263   402 Q--PQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQpvaGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPlyq 479
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1095 -DQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHIRPGVKQaPRPSGADRNVSVDSTHPTKKPGTRRPPLPP 1173
Cdd:PRK10263   480 qPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQ-PIPEPVKEPEPIKSSLKAPSVAAVPPVEAA 558
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1790089372 1174 RPTHPRRKPLppNNVTGKPGSAGIISSgPITTPPLRSTPRP 1214
Cdd:PRK10263   559 AAVSPLASGV--KKATLATGAAATVAA-PVFSLANSGGPRP 596
PHA03247 PHA03247
large tegument protein UL36; Provisional
745-1323 1.00e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 1.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  745 PRPEAPESKPVPTAEL-------KPVTLRTETWVTTQAPKTSQRTRRPRPKTKTTPSPEVPQtKLVPSTDLEPgtlrtEA 817
Cdd:PHA03247  2504 PDPDAPPAPSRLAPAIlpdepvgEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPD-RSVPPPRPAP-----RP 2577
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  818 PKTMVVTTVLEPDTfrtkfPETTLAPKTQRTRRPRPRPKTTSSPEVPQNKSVSVTGFEPVVHSTDAPGTTFALTELQTLI 897
Cdd:PHA03247  2578 SEPAVTSRARRPDA-----PPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  898 LKPVTSPSLEMTESQPVSDVLESVTLSTESPKETIAPAKTDYVYPTAKAPLWPEEPKTEVVESITYVSEPPETTLETSPL 977
Cdd:PHA03247  2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  978 PSQSITlPSPdepqtePAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPqrvtAKPKTSPSPEVSYTTPAPKDVLLPHKPYP 1057
Cdd:PHA03247  2733 PALPAA-PAP------PAVPAGPATPGGPARPARPPTTAGPPAPAPP----AAPAAGPPRRLTRPAVASLSESRESLPSP 2801
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1058 EVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLEETDQSTQEPFTTKIPRTTELAkttqaphrfyttvrprtsdkphir 1137
Cdd:PHA03247  2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA------------------------ 2857
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1138 PGVKQAPRPsgadrnvsvdsthPTKkpgtrrpplpPRPTHPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPRPTGT 1217
Cdd:PHA03247  2858 PGGDVRRRP-------------PSR----------SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1218 PLERIETDIKQPTVPASGEELENITDFSSSPTRETDPLGKPRfkgPHVRYIQKPDNSPCSITDSVKRFPkEEATEGNATS 1297
Cdd:PHA03247  2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS---GAVPQPWLGALVPGRVAVPRFRVP-QPAPSREAPA 2990
                          570       580
                   ....*....|....*....|....*.
gi 1790089372 1298 PPQNPPTNLTVVTVEGCPSFVILDWE 1323
Cdd:PHA03247  2991 SSTPPLTGHSLSRVSSWASSLALHEE 3016
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
988-1075 1.15e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.86  E-value: 1.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  988 DEPQTEPAPKQTPRAPPKPKTSPRP-RIPQTQPVPKVPQRVTAKPKTSPSPEvSYTTPAPKDVLLPHKPYPEVSQSEPAP 1066
Cdd:PRK14954   374 VRNDGGVAPSPAGSPDVKKKAPEPDlPQPDRHPGPAKPEAPGARPAELPSPA-SAPTPEQQPPVARSAPLPPSPQASAPR 452

                   ....*....
gi 1790089372 1067 LETRGIPFI 1075
Cdd:PRK14954   453 NVASGKPGV 461
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
923-1304 1.50e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  923 LSTESPKETIAPAKTDYVYPTAKAPLWPE-EPKTEVV--ESITYVSEPPETTLETSPLPSQSITLPSPDEPQTEPAPKQT 999
Cdd:PHA03307    44 VSDSAELAAVTVVAGAAACDRFEPPTGPPpGPGTEAPanESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP 123
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1000 PRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPKDVLlphkPYPEVSQSEPAPletrgipfipmis 1079
Cdd:PHA03307   124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL----PLSSPEETARAP------------- 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1080 PSPSQEelqttleetdqstqepfttkIPRTTELAKTTQAPHRFYTTVRPRTSDkPHIRPGVKQAPRPSGAdrnvSVDSTH 1159
Cdd:PHA03307   187 SSPPAE--------------------PPPSTPPAAASPRPPRRSSPISASASS-PAPAPGRSAADDAGAS----SSDSSS 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1160 PTKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGiiSSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELE 1239
Cdd:PHA03307   242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP--SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS 319
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1790089372 1240 NITDFSSSPTRETDPlgKPRfkGPHVRYIQKPDNSPCSITDSVKRFPKEEATEGNATSPPQNPPT 1304
Cdd:PHA03307   320 SSRESSSSSTSSSSE--SSR--GAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380
PRK10263 PRK10263
DNA translocase FtsK; Provisional
870-1147 2.48e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.85  E-value: 2.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  870 SVTgfEPVVHSTDAPGTTFALTELQTLILKPVTSPSLEMTESQPVSDVLESVTLSTESPkeTIAPAKTDYV-YPTAKAPL 948
Cdd:PRK10263   315 PIT--EPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEP--VIAPAPEGYPqQSQYAQPA 390
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  949 WP-----EEPKTEVVESITYVSEPPETTLETSPLPSQSITLPSPDEPQTEPAPKQTPRAPPK-----PKTSPRPRIPQTQ 1018
Cdd:PRK10263   391 VQyneplQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQqstfaPQSTYQTEQTYQQ 470
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1019 PVPK-----VPQRVTAKPKTSPSPEVSYTTPAPKdvllPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLEE 1093
Cdd:PRK10263   471 PAAQeplyqQPQPVEQQPVVEPEPVVEETKPARP----PLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKA 546
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1790089372 1094 TDQSTQEPFT---TKIPRTTELAKTTQAPHRFYTTVRPRTS------DKPHIRPGV-KQAPRPS 1147
Cdd:PRK10263   547 PSVAAVPPVEaaaAVSPLASGVKKATLATGAAATVAAPVFSlansggPRPQVKEGIgPQLPRPK 610
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
625-1023 3.72e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 45.45  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  625 KHKTTPRPETLQTKLDFGPITPGTSSAPTTTtkrtrrPHPKPKTTPHPEVPQTKLATKTSKRTRPPRPRPKTTPSPQAPE 704
Cdd:PTZ00449   493 KKKLAPIEEEDSDKHDEPPEGPEASGLPPKA------PGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKE 566
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  705 TKPVPATVLepvTLRPEASTTLAS----KTSQRTRRPRLRTKTT--PRPEAPESKPVPTAELKPvtlrtETWVTTQAPKT 778
Cdd:PTZ00449   567 HKPSKIPTL---SKKPEFPKDPKHpkdpEEPKKPKRPRSAQRPTrpKSPKLPELLDIPKSPKRP-----ESPKSPKRPPP 638
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  779 SQRTRRPR----PKT-KTTPSPEVPQTKLVPS------TDLEPGTLRTEAPKTMVVTTVLEPDTFRTKFPETTLAPKTQR 847
Cdd:PTZ00449   639 PQRPSSPErpegPKIiKSPKPPKSPKPPFDPKfkekfyDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTP 718
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  848 TRRPRPRPKTTSSPEVPQNksvsvtgfEPVVHSTDaPGTTFALTELQTLILKpvtspslEMTESQPVSDVL------ESV 921
Cdd:PTZ00449   719 RPLPPKLPRDEEFPFEPIG--------DPDAEQPD-DIEFFTPPEEERTFFH-------ETPADTPLPDILaeefkeEDI 782
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  922 TLSTESPKETIAPAKTDYVYPTAKAPLWPEEPK-----------------------------------TEVVESITYVSE 966
Cdd:PTZ00449   783 HAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKkrhrldglalsttdlesdagriakdasgkivklkrSKSFDDLTTVEE 862
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1790089372  967 PPETTLETSPLPSQSITLPSPDEpQTEPA------------PKQTPRAPPKPKTSPRPRIPQTQPVPKV 1023
Cdd:PTZ00449   863 AEEMGAEARKIVVDDDGTEADDE-DTHPPeekhksevrrrrPPKKPSKPKKPSKPKKPKKPDSAFIPSI 930
fn3 pfam00041
Fibronectin type III domain;
116-195 5.38e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 40.48  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPND-RFYTIRYREKDKEKKWIFQICPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71

                   ...
gi 1790089372  193 GVK 195
Cdd:pfam00041   72 RVQ 74
PRK11633 PRK11633
cell division protein DedD; Provisional
944-1047 5.42e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.07  E-value: 5.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  944 AKAPLWP---EEPKTEVVESITYV--SEPPETTLE-----TSPLPSQSITLPSPDEPQTEPAPKqtPRAPPKPKtsPRPR 1013
Cdd:PRK11633    39 AAIPLVPkpgDRDEPDMMPAATQAlpTQPPEGAAEavragDAAAPSLDPATVAPPNTPVEPEPA--PVEPPKPK--PVEK 114
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1790089372 1014 iPQTQPVPKVPQRVTAKPKTSPSPEVSyTTPAPK 1047
Cdd:PRK11633   115 -PKPKPKPQQKVEAPPAPKPEPKPVVE-EKAAPT 146
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
117-195 5.53e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 40.29  E-value: 5.53e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372   117 PLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPNDRFYTIRYREKDKEKKWIFQICPA----TETIVENLKPNTVYEF 192
Cdd:smart00060    4 PSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTEYEF 72

                    ...
gi 1790089372   193 GVK 195
Cdd:smart00060   73 RVR 75
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
720-1046 6.55e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 44.18  E-value: 6.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  720 PEASTTLASKTSQRT-RRPRLRTKTTPRPEAPESKPVPTAELKPVTLRTETWVTTQAPKTSQRTRRPRPKTKTTPSPEVP 798
Cdd:pfam17823   66 APAPVTLTKGTSAAHlNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAP 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  799 QTKlVPSTdlePGTLRTEAPKTMVVTTVLEPDTFRTKFPETTLAPKTQRTRRPRPRPKTTS----SPEVPQNKSVSVTGF 874
Cdd:pfam17823  146 RAA-ACRA---NASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSApatlTPARGISTAATATGH 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  875 EPVVHSTDAPGTTFALTELQTLILKPVTSPSLEMTESQPVSDVLESVTLSTESP-KETIAPAKTDYVYPTAKAPLWPEEP 953
Cdd:pfam17823  222 PAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPhARRLSPAKHMPSDTMARNPAAPMGA 301
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  954 KTEVVESITYVSEPPETTlETSPLPSQSITLPSPDEPQ-----------TEPAPKQTPRAPPKP--KTSPRPRI----PQ 1016
Cdd:pfam17823  302 QAQGPIIQVSTDQPVHNT-AGEPTPSPSNTTLEPNTPKsvastnlavvtTTKAQAKEPSASPVPvlHTSMIPEVeatsPT 380
                          330       340       350
                   ....*....|....*....|....*....|
gi 1790089372 1017 TQPVPKVPQRVTAKPKTSPSPEVSYTTPAP 1046
Cdd:pfam17823  381 TQPSPLLPTQGAAGPGILLAPEQVATEATA 410
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
1296-1440 7.28e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 44.22  E-value: 7.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1296 TSPPQnPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV--ISRENGSFSGKNKSIqmtNQTFSTVENLKPNTSYEFQV 1373
Cdd:COG3401    324 LTPPA-APSGLTATAVG--SSSITLSWTASSDADVTGYNVyrSTSGGGTYTKIAETV---TTTSYTDTGLTPGTTYYYKV 397
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1790089372 1374 KPKNPLG-EGPVSNTVAFSTESADPRVSEPVSAGRDAIWTERPFNSDSYSECKGKQYVKRTWYKKFVG 1440
Cdd:COG3401    398 TAVDAAGnESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTG 465
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
408-806 8.59e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.14  E-value: 8.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  408 TSAGTITPKI--SKSPEPTWTTPAPGKTQFISLKPKIPLsPEVTH-----TKPA---PEPQTLLPSQSTIGPETPGTKPS 477
Cdd:pfam05109  410 TNATTTTHKVifSKAPESTTTSPTLNTTGFAAPNTTTGL-PSSTHvptnlTAPAstgPTVSTADVTSPTPAGTTSGASPV 488
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  478 T-TLAPRKTKRPGRRPRPRPRPKTTPSPEVPKSKPALEPATIQPEPLVPTTASKPSERPKTTHRPDAPQIQPGSKPPKql 556
Cdd:pfam05109  489 TpSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPT-- 566
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  557 lPKPQTTAEPDMPPTKSVSEPVPFETEAPSMTIVPTTDIEPVTV--RTEATVTTLAPKTSQRTRTRRPRPKHKTTPRPET 634
Cdd:pfam05109  567 -PNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLggTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMS 645
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  635 LQTKLDFGPITPGTSSAPTTTTKRTRRPHP---KPKTTPHPEVPQTKLATKTSKRTRPPRPRPKTTPSPQAPETKPVPAT 711
Cdd:pfam05109  646 LRPSSISETLSPSTSDNSTSHMPLLTSAHPtggENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVN 725
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  712 VLEPVTlrPEASTTLASKTSQRTRRPRLRTK------------TTPRPEAPESKPVPTAELKPVTLRTETWVTTQAPKTS 779
Cdd:pfam05109  726 VTKGTP--PKNATSPQAPSGQKTAVPTVTSTggkansttggkhTTGHGARTSTEPTTDYGGDSTTPRTRYNATTYLPPST 803
                          410       420
                   ....*....|....*....|....*..
gi 1790089372  780 QRTRRPRPKTKTTPSPEVPQTKLVPST 806
Cdd:pfam05109  804 SSKLRPRWTFTSPPVTTAQATVPVPPT 830
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
511-579 9.61e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.64  E-value: 9.61e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1790089372  511 PALEPATIQPEPLVPTtASKPSERPKTTHRPDAPQIQPGSKPPKQLLPKPQTTAEPDMPPTKSVSEPVP 579
Cdd:PRK14950   362 PVPAPQPAKPTAAAPS-PVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAP 429
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
1093-1397 9.81e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 43.84  E-value: 9.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1093 ETDQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHIRPGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLP 1172
Cdd:COG3401     23 VNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGS 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1173 PRPTHPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRET 1252
Cdd:COG3401    103 VGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVAT 182
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1253 DPLGKPRFKGPHVRYIQKPDNS----PCSITDSVKRFPKEEATEGNATSPPqNPPTNLTVVTVEgcPSFVILDWEKPLND 1328
Cdd:COG3401    183 TSLTVTSTTLVDGGGDIEPGTTyyyrVAATDTGGESAPSNEVSVTTPTTPP-SAPTGLTATADT--PGSVTLSWDPVTES 259
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1329 TVTEYEvISRENGSfSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNPLG-EGPVSNTVAFSTESADP 1397
Cdd:COG3401    260 DATGYR-VYRSNSG-DGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPP 327
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
888-1131 1.09e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 1.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  888 FALTELQTLILKPVTSPSlemtESQPVSDVLESVTLSTE--SPKETIAPAKTDYVYPTAKAPLwPEEPKTEVVESITYVS 965
Cdd:PRK12323   353 FTMTLLRMLAFRPGQSGG----GAGPATAAAAPVAQPAPaaAAPAAAAPAPAAPPAAPAAAPA-AAAAARAVAAAPARRS 427
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  966 EPPEttletsplPSQSITLPSPDEPQTEPAPkqTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPA 1045
Cdd:PRK12323   428 PAPE--------ALAAARQASARGPGGAPAP--APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1046 PKDVLLPHKPYPEVSQSEPApletrgipfipmispsPSQEELQTTLEETDQSTQEPFTTKIPRTT--ELAKTTQAPHRFY 1123
Cdd:PRK12323   498 PWEELPPEFASPAPAQPDAA----------------PAGWVAESIPDPATADPDDAFETLAPAPAaaPAPRAAAATEPVV 561

                   ....*...
gi 1790089372 1124 TTVRPRTS 1131
Cdd:PRK12323   562 APRPPRAS 569
PRK10263 PRK10263
DNA translocase FtsK; Provisional
339-646 1.15e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.92  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  339 TKPTTSSAldvSETTLASSekpWIVPTAKISEDSKVLQPQTAPQQTTsipstpkrrprpkpprtkPERTTSAGTITPK-- 416
Cdd:PRK10263   317 TEPVAVAA---AATTATQS---WAAPVEPVTQTPPVASVDVPPAQPT------------------VAWQPVPGPQTGEpv 372
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  417 IskSPEPTWTTPAPGKTQfislkpkiplsPEVTHTKPAPEPQTLLPSQSTIGPETPGTKPSTTLAPRKTKRPGRRPRPRP 496
Cdd:PRK10263   373 I--APAPEGYPQQSQYAQ-----------PAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPE 439
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  497 RPKTTPSPEVPKSKPALEP-ATIQPEPLV--PTTASKPSERPKTTHRPDAPQIQPG------SKPP-------------- 553
Cdd:PRK10263   440 QPVAGNAWQAEEQQSTFAPqSTYQTEQTYqqPAAQEPLYQQPQPVEQQPVVEPEPVveetkpARPPlyyfeeveekrare 519
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  554 -KQLLPKPQTTAEPDMPPtksvsEPVPFETEAPSMTIVPTTDIEPVTVRTEATV--TTLAPKTSQRTRTRRPRPKHKTTP 630
Cdd:PRK10263   520 rEQLAAWYQPIPEPVKEP-----EPIKSSLKAPSVAAVPPVEAAAAVSPLASGVkkATLATGAAATVAAPVFSLANSGGP 594
                          330
                   ....*....|....*.
gi 1790089372  631 RPetlQTKLDFGPITP 646
Cdd:PRK10263   595 RP---QVKEGIGPQLP 607
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
872-1066 1.72e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 42.91  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  872 TGFEPVVHSTDAPGTTFALTELQTLILKPVTSPSLEMTESQPVSDVLESVTLSTESPKETIAPAKTDYVYPTAKAPLWPE 951
Cdd:COG3266    159 EEQLLLLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAE 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  952 EPKTEVVESITYV----SEPPETTLETSPLPSQsitLPSPDEPQTEPAPKQTPRAPPKPKTSPrpripQTQPVPKVPQRV 1027
Cdd:COG3266    239 VLTARLVLLLLIIgsalKAPSQASSASAPATTS---LGEQQEVSLPPAVAAQPAAAAAAQPSA-----VALPAAPAAAAA 310
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1790089372 1028 TAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAP 1066
Cdd:COG3266    311 AAAPAEAAAPQPTAAKPVVTETAAPAAPAPEAAAAAAAP 349
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
967-1075 2.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.46  E-value: 2.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  967 PPETTLETSPLPSQSITLPSPDEPQTEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAp 1046
Cdd:PRK14971   391 QPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPS- 469
                           90       100
                   ....*....|....*....|....*....
gi 1790089372 1047 kdVLLPHKPYPEVSQSEPAPLETRGIPFI 1075
Cdd:PRK14971   470 --TLRPIQEKAEQATGNIKEAPTGTQKEI 496
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
116-195 2.40e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 38.63  E-value: 2.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  116 KPLQLVVGTLTPSSVFLSWgfliNPHHDWTLPSHcpndrFYTIRYREKDKE--KKWIFQICPATETIVENLKPNTVYEFG 193
Cdd:cd00063      3 PPTNLRVTDVTSTSVTLSW----TPPEDDGGPIT-----GYVVEYREKGSGdwKEVEVTPGSETSYTLTGLKPGTEYEFR 73

                   ..
gi 1790089372  194 VK 195
Cdd:cd00063     74 VR 75
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
672-843 3.08e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  672 PEVPQTKLATKTSKRTRPPRPRPKTTPSPQAPETKPVPATVLEPVTLRPEA-STTLASKTSQRTRRPRLRTKTTPRPEAP 750
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPAPAP 454
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  751 ESKPVPTAELKPVTLRTETWVTTQAPKTSQRTRRPRPKTKTTPS-PEVPQTKLVPS-TDLEPGTLRTEAPKTMVVTTVLE 828
Cdd:PRK12323   455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPwEELPPEFASPApAQPDAAPAGWVAESIPDPATADP 534
                          170
                   ....*....|....*
gi 1790089372  829 PDTFRTKFPETTLAP 843
Cdd:PRK12323   535 DDAFETLAPAPAAAP 549
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
440-666 5.00e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 5.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  440 PKIPLSPEVTHTKPAPEPQTLLPSQSTIGPETPGTKPSTTLAPRktkrpgrrprprprpKTTPSPEVPKSKPALEPATIQ 519
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAAR---------------AVAAAPARRSPAPEALAAARQ 438
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  520 PEPLVPTTASKPSERPKTTHRPDAPQIQPGSKPPKQLLPKPQTTAEPDMPPTKSVSEPVPFETEAPSMTIVPTTDIEPVT 599
Cdd:PRK12323   439 ASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1790089372  600 VRTEAtvttlapktsqrtrtrrprpkhKTTPRPETLQTKLDFGPITPGTSSAPTTTTKRTRRPHPKP 666
Cdd:PRK12323   519 AGWVA----------------------ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
966-1253 5.13e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.60  E-value: 5.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  966 EPPETTlETSPLPSQSITLPSPDEPQTEPAPK-QTPRAPPKPKTSPRPRIPQtQPVPKVPQRVTAKPKTSPSPEVSYTTP 1044
Cdd:PTZ00449   509 EPPEGP-EASGLPPKAPGDKEGEEGEHEDSKEsDEPKEGGKPGETKEGEVGK-KPGPAKEHKPSKIPTLSKKPEFPKDPK 586
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1045 APKDVLLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTlEETDQSTQEPFTTKIPRTTELAKTTQAPHRFYT 1124
Cdd:PTZ00449   587 HPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKS-PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372 1125 TVRPRTSDK---PHIRPGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGIISSG 1201
Cdd:PTZ00449   666 PFDPKFKEKfydDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPD 745
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1790089372 1202 PI--TTPPLRSTPR----PTGTPLERIETD-IKQPTVPASGEELENITDFSSSPTRETD 1253
Cdd:PTZ00449   746 DIefFTPPEEERTFfhetPADTPLPDILAEeFKEEDIHAETGEPDEAMKRPDSPSEHED 804
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
964-1066 6.77e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 6.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  964 VSEPPETTLETSPLPSQSI-TLPSPDEPQTEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVtakpktsPSPEVSYT 1042
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAaPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV-------ALAPAPPA 453
                           90       100
                   ....*....|....*....|....*.
gi 1790089372 1043 TPAPKDVLLPHK--PYPEVSQSEPAP 1066
Cdd:PRK14951   454 QAAPETVAIPVRvaPEPAVASAAPAP 479
PRK10819 PRK10819
transport protein TonB; Provisional
957-1070 7.35e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 40.05  E-value: 7.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  957 VVESITYVSEPPETTLETSPLP-SQSITLPSPDEPQTEPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSP 1035
Cdd:PRK10819    26 VVAGLLYTSVHQVIELPAPAQPiSVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKP 105
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1790089372 1036 SPEvsyttPAPKDVLLPHKPYPEVSQSEPAPLETR 1070
Cdd:PRK10819   106 KPK-----PVKKVEEQPKREVKPVEPRPASPFENT 135
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
774-1015 8.30e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 40.68  E-value: 8.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  774 QAPKTSQRTRRPRPktktTPSPEVPQTKLVPSTDLEPGTLRTEAPKTMVVTTV---LEPDTFRTKFPETTLAPKTQRTRR 850
Cdd:PLN03209   328 VPPKESDAADGPKP----VPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAyedLKPPTSPIPTPPSSSPASSKSVDA 403
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  851 PRPRPKTTSSPEVPQNKSVSVTGFEPVVHSTDAPGTTFALTElqtlILKPVTSPSleMTESQPVSDVLESVTLSTESPKE 930
Cdd:PLN03209   404 VAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYE----DLKPPTSPS--PTAPTGVSPSVSSTSSVPAVPDT 477
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  931 TIAPAKTDYVYPTAKA--PLWPE------EPKTEVVESITYVSEPPETTLETSPLPSQSITLPSPDEpQTEPAPKQTPRA 1002
Cdd:PLN03209   478 APATAATDAAAPPPANmrPLSPYavyddlKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADE-QHHAQPKPRPLS 556
                          250
                   ....*....|....*....
gi 1790089372 1003 P------PKPKTSPRPRIP 1015
Cdd:PLN03209   557 PytmyedLKPPTSPTPSPV 575
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
924-1061 8.43e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.62  E-value: 8.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790089372  924 STESPKETIAPAKTDYVYPTAKAPLWPEEPKTE--VVESITYVSEPPETTLETSPLPSQSITLPSPDEPQTEPAPKQTPR 1001
Cdd:PRK07994   367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVppPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1790089372 1002 APPKPKTSPRPRIPQTQPVPKVPQ---------RVTAKPKTSPSPEVSYTTPAPKDVLLPHKPyPEVSQ 1061
Cdd:PRK07994   447 SRARPVNSALERLASVRPAPSALEkapakkeayRWKATNPVEVKKEPVATPKALKKALEHEKT-PELAA 514
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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