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Conserved domains on  [gi|1797616253|ref|NP_001364416|]
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uncharacterized protein LOC4329997 [Oryza sativa Japonica Group]

Protein Classification

ribosomal mL41 family protein( domain architecture ID 5571)

mitochondrion-specific ribosomal mL41 family protein is a component of the mitochondrial ribosome (mitoribosome), a dedicated translation machinery responsible for the synthesis of mitochondrial genome-encoded proteins

Gene Ontology:  GO:0003735|GO:0005762|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-L27 super family cl10782
Mitochondrial ribosomal protein L27; Members of this family of proteins are components of the ...
 25-77 2.08e-18

Mitochondrial ribosomal protein L27; Members of this family of proteins are components of the mitochondrial ribosome large subunit. They are also involved in apoptosis and cell cycle regulation.


The actual alignment was detected with superfamily member pfam09809:

Pssm-ID: 286847  Cd Length: 97  Bit Score: 73.13  E-value: 2.08e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1797616253  25 LSSKRAPRDYYKGKNCKPTGFHTRKGGYVMVDEKLPRFVVPDLTDFKLKPYVS 77
Cdd:pfam09809   9 LTTKRGNKTFYKGTGARGIGRHTSSGRYVINWEKVRTFVVPNLEGFKLKPYVS 61
 
Name Accession Description Interval E-value
MRP-L27 pfam09809
Mitochondrial ribosomal protein L27; Members of this family of proteins are components of the ...
 25-77 2.08e-18

Mitochondrial ribosomal protein L27; Members of this family of proteins are components of the mitochondrial ribosome large subunit. They are also involved in apoptosis and cell cycle regulation.


Pssm-ID: 286847  Cd Length: 97  Bit Score: 73.13  E-value: 2.08e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1797616253  25 LSSKRAPRDYYKGKNCKPTGFHTRKGGYVMVDEKLPRFVVPDLTDFKLKPYVS 77
Cdd:pfam09809   9 LTTKRGNKTFYKGTGARGIGRHTSSGRYVINWEKVRTFVVPNLEGFKLKPYVS 61
 
Name Accession Description Interval E-value
MRP-L27 pfam09809
Mitochondrial ribosomal protein L27; Members of this family of proteins are components of the ...
 25-77 2.08e-18

Mitochondrial ribosomal protein L27; Members of this family of proteins are components of the mitochondrial ribosome large subunit. They are also involved in apoptosis and cell cycle regulation.


Pssm-ID: 286847  Cd Length: 97  Bit Score: 73.13  E-value: 2.08e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1797616253  25 LSSKRAPRDYYKGKNCKPTGFHTRKGGYVMVDEKLPRFVVPDLTDFKLKPYVS 77
Cdd:pfam09809   9 LTTKRGNKTFYKGTGARGIGRHTSSGRYVINWEKVRTFVVPNLEGFKLKPYVS 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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