|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
513-1286 |
9.48e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 106.29 E-value: 9.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 513 QYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKI 592
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 593 VAYSSIAAKNAELEQELMEKNEKIRSLETNINTEhekiclafekakkihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT 672
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESL---------------EAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 673 MSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEEtikVRQLDSALEICKEELVLHLNQLEGNKE 752
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE---LQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 753 KFEKQLKKKSEEVYCLQKELKIKN------HSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSK-LE 825
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQarldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAaLG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 826 QELQKQRESSAEKLRK----MEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMH 901
Cdd:TIGR02168 545 GRLQAVVVENLNAAKKaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 902 LSQLDMIldQTKTELEKKTN---------------------AVKELEKLQHSTETELTEALQKREVLETELQNAHGELKS 960
Cdd:TIGR02168 625 VLVVDDL--DNALELAKKLRpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 961 TLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLdmtiREHRG 1040
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1120
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1121 QYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVRE 1200
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1201 AHLEARmqaeikklsaevesLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEK-------AKLELEEAQDTVSN 1273
Cdd:TIGR02168 939 DNLQER--------------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDF 1004
|
810
....*....|...
gi 1803357890 1274 LHQQVQDRNEVIE 1286
Cdd:TIGR02168 1005 LTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
645-1312 |
6.48e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.13 E-value: 6.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 645 HKEMEKQIERLEAQLEKKdQQFKEQEKTMSMLQQDIICKQ--HHLESLDRLLtESKGEMKKENMKKDEALKALQNQVSEE 722
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-ERYKELKAELRELELALLVLRleELREELEELQ-EELKEAEEELEELTAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 723 TIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQmlqq 802
Cdd:TIGR02168 273 RLEVSELEEEIEELQKEL----YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE---- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 803 etirngELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELS 882
Cdd:TIGR02168 345 ------KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 883 KMEKEIMHLKRDGENKAMHLSQldMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTL 962
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 963 RQLQELRD-------VLQKA------------QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDqALKERNWELKQ 1023
Cdd:TIGR02168 496 RLQENLEGfsegvkaLLKNQsglsgilgvlseLISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIA-FLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1024 RAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIML-------- 1089
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRivtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1090 ------------QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQ 1157
Cdd:TIGR02168 655 vrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1158 QVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQ-----------------AEIKKLSAEVES 1220
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEeleaqieqlkeelkalrEALDELRAELTL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1221 LKEAYH---MEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKES 1297
Cdd:TIGR02168 815 LNEEAAnlrERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730
....*....|....*
gi 1803357890 1298 ELTRLQAKISGHEKA 1312
Cdd:TIGR02168 895 ELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-1306 |
2.32e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.12 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 603 AELEQELMEKNEKIRSLETNINTEHEKiclAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIIC 682
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLE---ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 683 KQHHLESLDRLLTEskgeMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVL---HLNQLEGNKEKFEKQLK 759
Cdd:TIGR02168 286 LQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 760 KKSEEvyclQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGE----LEDTQTKLEKQVSKLEQELQK-QRES 834
Cdd:TIGR02168 362 ELEAE----LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerLEDRRERLQQEIEELLKKLEEaELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 835 SAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKaMHLSQLDMILDQTKT 914
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-EGFSEGVKALLKNQS 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 915 ELEKKTNAVKELEKLQHSTETELTEALQKR-EVLETELQNAHGELKSTLRQLQELR-----------DVLQKAQLSLEEK 982
Cdd:TIGR02168 517 GLSGILGVLSELISVDEGYEAAIEAALGGRlQAVVVENLNAAKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 983 YTTIKDLTAELRECKMEIEDKKQELL-------EMDQALKERNwELKQRAAQVTHLDMTIREH-------------RGEM 1042
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAK-KLRPGYRIVTLDGDLVRPGgvitggsaktnssILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1043 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqEQY 1122
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-------EER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1123 IATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAH 1202
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1203 LEARM----------QAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS 1272
Cdd:TIGR02168 829 LERRIaaterrledlEEQIEELSEDIESLAA----EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
730 740 750
....*....|....*....|....*....|....
gi 1803357890 1273 NLHQQVQDRNEVIEAANEALLTKESELTRLQAKI 1306
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
557-1306 |
3.67e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 3.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 557 QEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNIntehekiclafek 636
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------------- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 637 akKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ 716
Cdd:TIGR02168 305 --QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 717 NQVSEETIKVRQLDSaLEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQ 796
Cdd:TIGR02168 383 TLRSKVAQLELQIAS-LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 797 QQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 876
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 877 YKEE---------LSKMEKEIMHLKRDGENKAMHLSqLDMILDQTKTEleKKTNAVKELEKLQHSTETELTEALQKREVL 947
Cdd:TIGR02168 542 ALGGrlqavvvenLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQG--NDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 948 ETELQNAH--GELKSTLRQLQELR----------DVL----------QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ 1005
Cdd:TIGR02168 619 SYLLGGVLvvDDLDNALELAKKLRpgyrivtldgDLVrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1006 ELLEMDQALKERNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1082
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1083 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQ 1162
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1163 REIERLSSELEdmkQLSKEKDAHGNHLAEELGASKVREAHLEArMQAEIKKLSAEVESLKEAYhmemishqenhakwkis 1242
Cdd:TIGR02168 859 AEIEELEELIE---ELESELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRREL----------------- 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1803357890 1243 aDSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTK-ESELTRLQAKI 1306
Cdd:TIGR02168 918 -EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
512-1168 |
2.16e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 2.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 592 IVAYS-------SIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEM----EKQIERLEAQLE 660
Cdd:TIGR02168 385 RSKVAqlelqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEleelQEELERLEEALE 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 661 KKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLT--ESKGEMKKENMKKDEALKALQNQVSeETIKVrqlDSALEICKE 738
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGILGVLS-ELISV---DEGYEAAIE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 739 E-LVLHLNQLEGNKEKFEKQ---LKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL---- 810
Cdd:TIGR02168 541 AaLGGRLQAVVVENLNAAKKaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsy 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 811 --------EDTQTKLEKQVSK--------LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEM 874
Cdd:TIGR02168 621 llggvlvvDDLDNALELAKKLrpgyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 875 DQYKEELSKMEKEIMHLKRDGEnkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNA 954
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 955 HGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQVTHL 1031
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERriaATERRLEDLEEQIEELSED 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1032 DMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKE 1111
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1803357890 1112 MESVMKEQEQYIATQYKEAIDLGQELRLTREqvqnshTELAEARHQQVQAQREIERL 1168
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIE------DDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-865 |
1.31e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 112 EIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQA--------ASVPILEEQIINLEAEVS 183
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaNEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 184 AQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKL 263
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 264 EKVQAEEEILERNltncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKnsEVMAQLTESRQSILKL 343
Cdd:TIGR02168 393 LQIASLNNEIERL------------------EARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 344 ESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELF-GFKSYLSkyQMSS 422
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsGILGVLS--ELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 423 FSNKEDRCI----GCCEANKLVISELRIKLAI---KEAEIQKLH------ANLTANQLSQSLITCNDSQESSKLSSLETE 489
Cdd:TIGR02168 531 VDEGYEAAIeaalGGRLQAVVVENLNAAKKAIaflKQNELGRVTflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 490 PVK--------LGGHQVAESVKDQNQhtMNKQYeKERQRLVTGIEELRTK--LIQIEAENSDLKVnmahrtsqfqliqee 559
Cdd:TIGR02168 611 DPKlrkalsylLGGVLVVDDLDNALE--LAKKL-RPGYRIVTLDGDLVRPggVITGGSAKTNSSI--------------- 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 560 lLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKK 639
Cdd:TIGR02168 673 -LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 640 IHLEQhKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENM---KKDEALKALQ 716
Cdd:TIGR02168 752 LSKEL-TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 717 NQVSEETIKVRQLDSALEICKEE---LVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTL 793
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1803357890 794 QQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEAdlkRQKVIELTG 865
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA---RRRLKRLEN 979
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
915-1205 |
6.39e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 6.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 915 ELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyttikdLTAELR 994
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-------LLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 995 ECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKL 1074
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAE-----------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1075 QNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEA 1154
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1803357890 1155 RHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEA 1205
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1012-1319 |
3.55e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 3.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1012 QALKErnwELKQRAAQVTHLDM-TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1090
Cdd:COG1196 216 RELKE---ELKELEAELLLLKLrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1091 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSS 1170
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1171 ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLsAEVESLKEAYHMEMISHQENHAKWKISADSQKSSV 1250
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-ERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 1251 QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLP 1319
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
809-1184 |
4.10e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 4.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 809 ELEDTQTKLEKqVSKLEQELQKQRESsaeklrkmeekcesaaheadLKRQKvieltGTARQVKiemdQYKEELSKMEKEI 888
Cdd:COG1196 180 KLEATEENLER-LEDILGELERQLEP--------------------LERQA-----EKAERYR----ELKEELKELEAEL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 889 MHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQEL 968
Cdd:COG1196 230 LLLKLR---------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 969 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLdmtirehrgemEQKIIK 1048
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA-----------EEALLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1049 LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYK 1128
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 1129 EAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDA 1184
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-1119 |
4.68e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 4.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 245 AEELSKAFQQYKK--KVAEKLEKVQAEEEILERnltncekenkrlqercGLYKSELEILKEKLRQLKEENNNGKEKLRIM 322
Cdd:TIGR02168 195 LNELERQLKSLERqaEKAERYKELKAELRELEL----------------ALLVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 323 AVKNSEVMAQLTESRQSILKLESELENKDEILrdkFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKiisql 402
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEAQLEELES----- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 403 plKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSK 482
Cdd:TIGR02168 331 --KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 483 LSSLEtepvklggHQVAESVKDQNQHTMNKQyEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLe 562
Cdd:TIGR02168 409 LERLE--------DRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD- 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 563 kasnssKLESEMTKKCSQLLTLEKQLEEkivaYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEkiclaFEKAKKIHL 642
Cdd:TIGR02168 479 ------AAERELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGILGVLSELISVDEG-----YEAAIEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 643 EQHKEMeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMK--KENMKKDEALKALQNQVS 720
Cdd:TIGR02168 544 GGRLQA-VVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvaKDLVKFDPKLRKALSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 721 EETIKVRQLDSALEICKE------------ELVL------------HLNQLEGNKE--KFEKQLKKKSEEVYCLQKELKI 774
Cdd:TIGR02168 623 GGVLVVDDLDNALELAKKlrpgyrivtldgDLVRpggvitggsaktNSSILERRREieELEEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 775 KNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESsAEKLRKMEEKCESAAHEAD 854
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 855 LKRQkviELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTE 934
Cdd:TIGR02168 782 AEIE---ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 935 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQAL 1014
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1015 KernwELKQRAAQVTHLDMtirehrGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE----KEFImlq 1090
Cdd:TIGR02168 939 D----NLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEElkerYDFL--- 1005
|
890 900
....*....|....*....|....*....
gi 1803357890 1091 nEQEISQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:TIGR02168 1006 -TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
558-1102 |
1.10e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 76.26 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 558 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKA 637
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 638 KKihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRL------LTESKGEMKKENMKKDEA 711
Cdd:PRK03918 283 KE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 712 LKALQN--QVSEETIKVRQLDSALEIckEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 789
Cdd:PRK03918 361 HELYEEakAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 790 QHTLQQQQQMLQQETIRN------------GELEDTQTKLEKQVSKLEQELQKQRESSaeKLRKMEEKCESAahEADLKR 857
Cdd:PRK03918 439 PVCGRELTEEHRKELLEEytaelkriekelKEIEEKERKLRKELRELEKVLKKESELI--KLKELAEQLKEL--EEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 858 QKVIELTGTARqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETEL 937
Cdd:PRK03918 515 YNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 938 TEALQKREvletELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD-QALKE 1016
Cdd:PRK03918 591 EERLKELE----PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELRE 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1017 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSElELKECNKQIESLNDKLQNAKEQLRE-KEFIMLQNEQEI 1095
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKyKALLKERALSKV 745
|
....*..
gi 1803357890 1096 SQLKKEI 1102
Cdd:PRK03918 746 GEIASEI 752
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
559-1311 |
4.28e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 559 ELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivAYSSIAAKNAELEQELMEKNEKIRSLEtnINTEHEKICL-AFEKA 637
Cdd:TIGR02169 157 KIIDEIAGVAEFDRKKEKALEELEEVEENIER---LDLIIDEKRQQLERLRREREKAERYQA--LLKEKREYEGyELLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 638 KKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMsmlqqdiickqhhlESLDRLLTESKGEMKKenmKKDEALKALQN 717
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRL--------------EEIEQLLEELNKKIKD---LGEEEQLRVKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 718 QVSEETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQ 797
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKEREL----EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 798 QMLQQETIRNGELEDTQTKLEKQVSKLEQELQkqrESSAEKLRKMEEKCESAAHEADLkRQKVIELTGTARQVKIEMDQY 877
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREIN---ELKRELDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDK 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 878 KEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGe 957
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 958 lksTLRQLQELRDVLQKA------------------------QLSLEEK--------YTTIKDLTAELRECKME-IEDKK 1004
Cdd:TIGR02169 526 ---TVAQLGSVGERYATAievaagnrlnnvvveddavakeaiELLKRRKagratflpLNKMRDERRDLSILSEDgVIGFA 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1005 QELLEMDQALKERNWELKQRAAQVTHLDmTIREHRGEMeqKIIKLEGTL-EKSELELKECNKQIESLNDKLQNAKE--QL 1081
Cdd:TIGR02169 603 VDLVEFDPKYEPAFKYVFGDTLVVEDIE-AARRLMGKY--RMVTLEGELfEKSGAMTGGSRAPRGGILFSRSEPAElqRL 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1082 REKEFIMlqnEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNShtelaearhqqvqa 1161
Cdd:TIGR02169 680 RERLEGL---KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL-------------- 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1162 QREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARM-QAEIKKLSAEVESLKEaYHMEmISHQENHAKWK 1240
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEE-EVSR-IEARLREIEQK 820
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 1241 ISADSQK-----SSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:TIGR02169 821 LNRLTLEkeyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
512-1119 |
4.35e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 4.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 592 IVAYSSIAAKNAELEQELMEKNEKIRSLEtninTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEK 671
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAE----EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 672 TMSMLQQDIICKQHHLESLDRLLTEsKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNK 751
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEE-LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 752 EKFEKQLKKKSEEVycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQ 831
Cdd:COG1196 477 AALAELLEELAEAA--ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 832 RESSAEKLrkmeekcesAAHEADLKRQKVIELTGTARQVKiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQ 911
Cdd:COG1196 555 DDEVAAAA---------IEYLKAAKAGRATFLPLDKIRAR-AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 912 TKTELEKKTNAVKELEKLqhstETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTA 991
Cdd:COG1196 625 RTLVAARLEAALRRAVTL----AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 992 ELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL- 1070
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALg 780
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1803357890 1071 --NdklQNAKEQLRE----KEFIMLQNEqeisQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:COG1196 781 pvN---LLAIEEYEEleerYDFLSEQRE----DLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
712-1306 |
5.90e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 5.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 712 LKALQNQvSEETIKVRQLDSALEICK-EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQnviLQ 790
Cdd:COG1196 202 LEPLERQ-AEKAERYRELKEELKELEaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE---LE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 791 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLeQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERR-RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 871 KIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 950
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 951 LQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTH 1030
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1031 LDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLND---KLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQ 1107
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1108 RMKEMESVMKEQEQYIATQYKEAIDLGQELRLTReqvqnshtELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGN 1187
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAA--------RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1188 HLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQEnhakwkisADSQKSSVQQLNEQLEKAKLELEEA 1267
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE--------RLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|....*....
gi 1803357890 1268 QDTVSNLHQQVQDRNEVIEAANEALltkESELTRLQAKI 1306
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDLEEL---ERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
552-1115 |
6.64e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 6.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 552 QFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivayssIAAKNAELEQELMEKNEKIRSLETNINTEHEKIc 631
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEE-------LRLELEELELELEEAQAEEYELLAELARLEQDI- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 632 lAFEKAKKIHLEQHK-EMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDE 710
Cdd:COG1196 305 -ARLEERRRELEERLeELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 711 ALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 790
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 791 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 871 KIEMDQYK--EELSKMEKEIMHLKRDGENKAMHLSQLDM------ILDQTKTELEKKTNAVKELEKLQHSTETELTEALQ 942
Cdd:COG1196 544 LAAALQNIvvEDDEVAAAAIEYLKAAKAGRATFLPLDKIraraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 943 KREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELK 1022
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1023 QRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKEcnkqieslndklqnAKEQLREKEFIMLQNEQEISQLKKEI 1102
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE--------------EEELLEEEALEELPEPPDLEELEREL 769
|
570
....*....|...
gi 1803357890 1103 ERTQQRMKEMESV 1115
Cdd:COG1196 770 ERLEREIEALGPV 782
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
558-1185 |
7.44e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.45 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 558 EELLEKASNSS-KLESEMTKKCSQLLTLEKQLEEKIVAysSIAAKNAELEQELMEKNEKIRSLETNINTEHEkiclAFEK 636
Cdd:PRK02224 165 EEYRERASDARlGVERVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARE----TRDE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 637 AKKIhLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKkDEALKALQ 716
Cdd:PRK02224 239 ADEV-LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-AEAVEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 717 NQVSEETIKVRQldsALEICKEELVLHLNQLEGNKEK---FEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTL 793
Cdd:PRK02224 317 EELEDRDEELRD---RLEECRVAAQAHNEEAESLREDaddLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 794 QQQQQMLQQETIRNGELED-------TQTKLEKQVSKLEQELQKQRESSAEKLRKMEE-KC-------ESAAH--EADLK 856
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDfleelreERDELREREAELEATLRTARERVEEAEALLEAgKCpecgqpvEGSPHveTIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 857 RQKVIELTGtarqvkiEMDQYKEELSKMEKEIMHLKRdgenkamhlsqldmiLDQTKTELEKKTNAVKELEKLQHSTETE 936
Cdd:PRK02224 474 RERVEELEA-------ELEDLEEEVEEVEERLERAED---------------LVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 937 LTEalqKREVLEtELQNAHGELKStlrQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIE--DKKQELLEMDQAL 1014
Cdd:PRK02224 532 IEE---KRERAE-ELRERAAELEA---EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADA 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1015 KERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSelelkecnkQIESLNDKLQNAKEQLREKEFIMLQNEQE 1094
Cdd:PRK02224 605 EDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA---------RIEEAREDKERAEEYLEQVEEKLDELREE 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1095 ISQLKKEIERTQQRMKEMESVMKEQE------QYIATQYKEAidlgqelrltrEQVQNSHTEL-AEARhqqvqaQREIER 1167
Cdd:PRK02224 676 RDDLQAEIGAVENELEELEELRERREalenrvEALEALYDEA-----------EELESMYGDLrAELR------QRNVET 738
|
650
....*....|....*...
gi 1803357890 1168 LSSELEDMKQLSKEKDAH 1185
Cdd:PRK02224 739 LERMLNETFDLVYQNDAY 756
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-1221 |
3.58e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 3.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLkvnMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKA---ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 592 IVAYSSIAAKNAELEQELMEKNEKIRSLetninTEHEKICLafekAKKIHleqhkEMEKQIERLEAQLEKKDQQFKEQEK 671
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDL-----GEEEQLRV----KEKIG-----ELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 672 TMSMLQQDIICKQHHLESLDRLLTESKGE---MKKENMKKDEALKALQNQVSEETIK---VRQLDSALEICKEELVLHLN 745
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRrdkLTEEYAELKEELEDLRAELEEVDKEfaeTRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 746 QLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSL----------------QETSEQNVILQHTLQQQQQMLQQETIRngE 809
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleeekedkaleikkQEWKLEQLAADLSKYEQELYDLKEEYD--R 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 810 LEDTQTKLEKQVSKLEQELQKQRESSAE--------------------KLRKMEEK----CESAAH--------EADLKR 857
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGgraveevlkasiqgvhgtvaQLGSVGERyataIEVAAGnrlnnvvvEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 858 QKVIELtgtARQVKI---------EMDQYKEELSKMEKEIMH-------------------------LKRDGENKAMHLS 903
Cdd:TIGR02169 561 KEAIEL---LKRRKAgratflplnKMRDERRDLSILSEDGVIgfavdlvefdpkyepafkyvfgdtlVVEDIEAARRLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 904 QLDM-------------ILDQTKTELEKKTNAVKELEKLQH------STETELTEALQKREVLETELQNAHGELKSTLRQ 964
Cdd:TIGR02169 638 KYRMvtlegelfeksgaMTGGSRAPRGGILFSRSEPAELQRlrerleGLKRELSSLQSELRRIENRLDELSQELSDASRK 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 965 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM--------TIR 1036
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripEIQ 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1037 EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1116
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1117 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELedmKQLSKEKDAHGNHLAEELGAS 1196
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL---SEIEDPKGEDEEIPEEELSLE 954
|
810 820
....*....|....*....|....*
gi 1803357890 1197 KVreahlearmQAEIKKLSAEVESL 1221
Cdd:TIGR02169 955 DV---------QAELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
647-1224 |
8.82e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 8.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 647 EMEKQIERLEAQLEK--KDQQFKEQEKtmsmlQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEA---LKALQNQVSE 721
Cdd:COG1196 197 ELERQLEPLERQAEKaeRYRELKEELK-----ELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 722 ETIKVRQLDSALEICKEELVLHLNQLEgnkeKFEKQLKKKSEEvyclqkelkIKNHSLQETSEQNVILQHTLQQQQQMLQ 801
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEER---------RRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 802 QETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQ------KVIELTGTARQVKIEMD 875
Cdd:COG1196 339 LEELEE-ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAaaelaaQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 876 QYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKRE-------VLE 948
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAeaaarllLLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 949 TELQNAHGELKSTLRQLQEL---RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwelKQRA 1025
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAglrGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK---AGRA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1026 AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERT 1105
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1106 QQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAH 1185
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1803357890 1186 GNHLAEELGASKVREAHLEARMQ--AEIKKLSAEVESLKEA 1224
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPepPDLEELERELERLERE 775
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1090-1325 |
1.01e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.56 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1090 QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLS 1169
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1170 SELEDMKQLSkEKDAHGNHLAEELGASKVREAhleARMQAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSS 1249
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSPEDFLDA---VRRLQYLKYLAPARREQAE----ELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 1250 VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLPAPFTSP 1325
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
579-1224 |
1.38e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 1.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 579 SQLLTLEKQleekivaySSIAAKNAELEQELMEKNE-----KIRSLETNINTEHEKIcLAFEKAKKIHLEQHKEMEKQIE 653
Cdd:COG1196 200 RQLEPLERQ--------AEKAERYRELKEELKELEAellllKLRELEAELEELEAEL-EELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 654 RLEAQLEKKDQQFKEQEKTMSMLQQDIIckqhHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSAL 733
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 734 EICKEELVLHLNQLEGNKEKFEKQLKKKSEEvycLQKELKIKNHSLQETSEQNVILQHTLQQQQqmlqqetirngELEDT 813
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEA---EEELEELAEELLEALRAAAELAAQLEELEE-----------AEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 814 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 893
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 894 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALqkREVLETELQNAHGElksTLRQLQELRDVLQ 973
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVE---DDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 974 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERnwELKQRAAQVTHLDMTIREHRGEMEQKIIK-LEGT 1052
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA--DARYYVLGDTLLGRTLVAARLEAALRRAVtLAGR 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1053 LEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAID 1132
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1133 LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE-DMKQLSKEKDAHG--NHLA-EELGASKVREAHLEarmq 1208
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELErELERLEREIEALGpvNLLAiEEYEELEERYDFLS---- 801
|
650
....*....|....*.
gi 1803357890 1209 AEIKKLSAEVESLKEA 1224
Cdd:COG1196 802 EQREDLEEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
109-700 |
5.85e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 5.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 109 VDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSML-ESAQQQAASVPILEEQIINLEAEVSAQDK 187
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 188 VLREAENKL--EQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKafqqykkkVAEKLEK 265
Cdd:TIGR02168 380 QLETLRSKVaqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE--------LEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 266 VQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLK--EENNNGKEKLRIMAVKNSEVMAQLTESRQSILKL 343
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 344 ESELE----------------NKDEILRDKFSLMNENRELKV--------RVAAQNERLDLCQQEIESSRVELRSLEKII 399
Cdd:TIGR02168 532 DEGYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 400 SQLP----------------------LKRELFGF-------KSYLSKYQMSSFSNKEDRCIGCCEANklvISELRIKLAI 450
Cdd:TIGR02168 612 PKLRkalsyllggvlvvddldnalelAKKLRPGYrivtldgDLVRPGGVITGGSAKTNSSILERRRE---IEELEEKIEE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 451 KEAEIQKLHANLTANQLSQSLITCNDSQ-------ESSKLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVT 523
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELEQlrkeleeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 524 GIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNA 603
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 604 ELEQELMEKNEKIRSLETNINTEHEKIclafekakKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICK 683
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
650
....*....|....*..
gi 1803357890 684 QHHLESLDRLLTESKGE 700
Cdd:TIGR02168 921 REKLAQLELRLEGLEVR 937
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
647-1314 |
6.83e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 6.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 647 EMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDE-ALKALQNQVSEETIK 725
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSmSTMHFRSLGSAISKI 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 726 VRQLDSALEICKEELVLHLNQLEG----NKEKFEKQLKKKSEEVYCLQKELKIKNHSLQET-----SEQNVILQHTLQQQ 796
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEAlkseSQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarSQANSIQSQLEIIQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 797 QQMLQQETIRNGELEDtqtkLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 876
Cdd:pfam15921 306 EQARNQNSMYMRQLSD----LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 877 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKL--------QHSTETELTEALQKREVLE 948
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNESLE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 949 tELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 1028
Cdd:pfam15921 462 -KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1029 THLDmtirehrgemeqkiiKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQR 1108
Cdd:pfam15921 541 DHLR---------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1109 MKEMESVMKEQEQYIatqyKEAIDLGQELRLTREQVQNSHTELAEA----RHQQVQAQREIERLSSELEDMKQLSKEKDA 1184
Cdd:pfam15921 606 LQEFKILKDKKDAKI----RELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKR 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1185 HGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEM---ISHQENHAKWKISADSQKSSVQQLNEQLEKAK 1261
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 1262 LELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAED 1314
Cdd:pfam15921 762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
810-1314 |
1.19e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 810 LEDTQTKLEKQVSKLEQELqKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV---KIEMDQYKEELSKMEK 886
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLekeVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 887 EIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLEtELQNAHGELKSTLRQLQ 966
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLD-ELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 967 ELRDVLQKAQlSLEEKYTTIKDLTAELRECKMEIEdKKQELLEMDQALKERNWELKQRAAQVTHLDM-----TIREHRGE 1041
Cdd:PRK03918 325 GIEERIKELE-EKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLekeleELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1042 MEQKIIKLE---GTLEKSELELKECNKQIESLNDKLQNAKEQLRE--KEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1116
Cdd:PRK03918 403 IEEEISKITariGELKKEIKELKKAIEELKKAKGKCPVCGRELTEehRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1117 KEQEQYIATQ-----YKEAIDLGQELR-----LTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1186
Cdd:PRK03918 483 RELEKVLKKEselikLKELAEQLKELEeklkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1187 NHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYhmemishqenhaKWKISADSQKSSVQQLNEQLEKAKLELEE 1266
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFY------------NEYLELKDAEKELEREEKELKKLEEELDK 630
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1267 AQDTVSNLHQQVQDRNEVIEAAN------------EALLTKESELTRLQAKISGHEKAED 1314
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEkkyseeeyeelrEEYLELSRELAGLRAELEELEKRRE 690
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
810-1122 |
1.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 810 LEDTQTKLEKQVSKLEQELQKqressAEKLRKMEEKCESAAHEAdlkrqkvieLTGTARQVKIEMDQYKEELSKMEKEIM 889
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEK-----AERYKELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 890 HLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELR 969
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 970 DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ----- 1044
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrr 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1045 ----------KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:TIGR02168 417 erlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
....*...
gi 1803357890 1115 VMKEQEQY 1122
Cdd:TIGR02168 497 LQENLEGF 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
634-1223 |
1.80e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 634 FEKAKKIHLEQHKEMEKQIERLEAQLEKK---DQQFKEQEKTMSMLQQDIICKQHHLESLdrlltESKGEMKKENMKKDE 710
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPEL-----REELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 711 ALKALQNQVSEETIKVRQLDSALEICKEELvlhlnqlegnkEKFEKQLKKKSEEVYCLQKELKiknhSLQETSEQNVILQ 790
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIREL-----------EERIEELKKEIEELEEKVKELK----ELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 791 HTLQQQQQMLQqetirngELEDTQTKLEKQVSKLEQELQKqRESSAEKLRKMEEKCESAAHEADLKRQKViELTGTARQV 870
Cdd:PRK03918 300 EFYEEYLDELR-------EIEKRLSRLEEEINGIEERIKE-LEEKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 871 KIEMDQYKEELS-----KMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTET---ELTEALQ 942
Cdd:PRK03918 371 KEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 943 KREVLE--TELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKdltaeLRECKMEIEDKKQELLEMDQALKERNWE 1020
Cdd:PRK03918 451 KELLEEytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-----LKELAEQLKELEEKLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1021 LKQraaqvthldmTIREHRGEMEQKIIKLEGTLEKSEL---ELKECNKQIESLNDKLQNAKEQLREKEFimlqneqeisq 1097
Cdd:PRK03918 526 EYE----------KLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGF----------- 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1098 lkKEIERTQQRMKEMESVMKEqeqyiatqYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1177
Cdd:PRK03918 585 --ESVEELEERLKELEPFYNE--------YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1803357890 1178 LSKEKDahgnhlaeelgASKVREAHLEARMqaEIKKLSAEVESLKE 1223
Cdd:PRK03918 655 KYSEEE-----------YEELREEYLELSR--ELAGLRAELEELEK 687
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-995 |
4.16e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 4.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 138 MTKFESIHFELtqsRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDkvLREAENKLEQSQKMVIEKEQSLQESKEEC 217
Cdd:TIGR02168 188 LDRLEDILNEL---ERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 218 IKLKVDLLEQTKQGKRAERQRNEA---LYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLY 294
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELqkeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 295 KSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELEnkdeilrdkfSLMNENRELKVRVAAQ 374
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA----------SLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 375 NERLDLCQQEIESSRVELRSLEKiisqlplkrelfgfksylskyqmssfsnkeDRCIGCCEANKLVISELRIKLAIKEAE 454
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAEL------------------------------KELQAELEELEEELEELQEELERLEEA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 455 IQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTMN-------------KQYEKE---- 517
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgvlselisvdEGYEAAieaa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 518 ----RQRLVTGIEELRTKLIQIEAENSDLKVNMahrtsqfqLIQEELLEKASNSSKLESEMTKKCSQ--LLTLEKQLEEK 591
Cdd:TIGR02168 543 lggrLQAVVVENLNAAKKAIAFLKQNELGRVTF--------LPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 592 IVAYSSIAA--KNAELEQELMEKNEKIRSLETNINTEHEKI----CLAFEKAKKIHLEQHKEMEkqIERLEAQLEKKDQQ 665
Cdd:TIGR02168 615 RKALSYLLGgvLVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggVITGGSAKTNSSILERRRE--IEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 666 FKEQEKTMSMLQQDIICKQHHLESLDRLLTEskgemkkenmkKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLN 745
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEE-----------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 746 QLEGNKEKFEKqlkkkseevycLQKELKiknhslqetseqnvilqhtlqqqqqmlqqetirngELEDTQTKLEKQVSKLE 825
Cdd:TIGR02168 762 EIEELEERLEE-----------AEEELA-----------------------------------EAEAEIEELEAQIEQLK 795
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 826 QELQKQRESSAEklrkmeekcesaaheadlKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQL 905
Cdd:TIGR02168 796 EELKALREALDE------------------LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 906 DMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTT 985
Cdd:TIGR02168 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
890
....*....|
gi 1803357890 986 IKDLTAELRE 995
Cdd:TIGR02168 938 IDNLQERLSE 947
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
252-1122 |
4.33e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 4.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 252 FQQYKKKVAEKLEKVQAEEEILErnltncekenkrlqercglykSELEILKEKLRQLKEENNNgkeklrimAVKNSEVMA 331
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLD---------------------LIIDEKRQQLERLRREREK--------AERYQALLK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 332 QLTESRQSILkleselenkdeiLRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGF 411
Cdd:TIGR02169 219 EKREYEGYEL------------LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 412 KSYLS-KYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTanQLSQSLitcndSQESSKLSSLETEp 490
Cdd:TIGR02169 287 EEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE--ELEREI-----EEERKRRDKLTEE- 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 491 vklgghqvaesvkdqnqhtmnkqYEKERQRLvtgiEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKL 570
Cdd:TIGR02169 359 -----------------------YAELKEEL----EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 571 ESEMTKKCSQLLTLEKQLEekivaysSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIclafEKAKKihleQHKEMEK 650
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIA-------GIEAKINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQ----ELYDLKE 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 651 QIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ-------NQVSEET 723
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnrlNNVVVED 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 724 IKVRQldSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEE----------VYCLQKELKIKNHSLQETSEQNVILQHTL 793
Cdd:TIGR02169 557 DAVAK--EAIELLKRRKAGRATFLPLNKMRDERRDLSILSEdgvigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARR 634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 794 QQQQQMLQ----------------QETIRNGELEDTQTKLE-KQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLK 856
Cdd:TIGR02169 635 LMGKYRMVtlegelfeksgamtggSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA 714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 857 RQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTET 935
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEaRLSHSRIP 794
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 936 ELTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 1015
Cdd:TIGR02169 795 EIQAELSK---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1016 ERNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMlQNE 1092
Cdd:TIGR02169 872 ELEAALRDLESRLGDLKKERDELEaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP-EEE 950
|
890 900 910
....*....|....*....|....*....|.
gi 1803357890 1093 QEISQLKKEIERTQQRMKEMESV-MKEQEQY 1122
Cdd:TIGR02169 951 LSLEDVQAELQRVEEEIRALEPVnMLAIQEY 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
497-1213 |
4.37e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 4.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 497 QVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEEllEKASNSSKLESEMTK 576
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEA--RKAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 577 KCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELmEKNEKIRSLETNINTEHEKiclAFEKAKKIHLEQHKEMEKQIErlE 656
Cdd:PTZ00121 1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEEL-RKAEDARKAEAARKAEEER---KAEEARKAEDAKKAEAVKKAE--E 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 657 AQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEIC 736
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 737 KEELVLHLNQLEGNKE-----KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELE 811
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKadaakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 812 DTQTKLEKQVSKLEQELQKQRESS-AEKLRKMEE---KCESAAHEADLKRqKVIELTGTARQVKIEMDQYKEELSKMEKE 887
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKkADEAKKKAEekkKADEAKKKAEEAK-KADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 888 IMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLET--ELQNAHGELKS-TLRQ 964
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdELKK 1553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 965 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemdQALKERNWELKQRAAQVthldmtirehRGEMEQ 1044
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-----EVMKLYEEEKKMKAEEA----------KKAEEA 1618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1045 KIIKLEgtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYI- 1123
Cdd:PTZ00121 1619 KIKAEE--LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKk 1696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1124 -ATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAH 1202
Cdd:PTZ00121 1697 eAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
730
....*....|.
gi 1803357890 1203 LEARMQAEIKK 1213
Cdd:PTZ00121 1777 KEAVIEEELDE 1787
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
877-1290 |
5.14e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 5.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 877 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHG 956
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR----ETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK---QELLEMDQALKERNWELKQRAAqvthldm 1033
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLEERAE------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1034 TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKefimlqnEQEISQLKKEIERTQQRMKEME 1113
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA-------EDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1114 SVMKEQEQYIAtqykEAIDL---------GQELRLT---------REQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1175
Cdd:PRK02224 433 ATLRTARERVE----EAEALleagkcpecGQPVEGSphvetieedRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1176 KQLSKEKDAHGNhlAEELGASKVREAHLEARMQAEIKKLSAEVESlkeayhmEMISHQENHAKWKISADSQKSSVQQLNE 1255
Cdd:PRK02224 509 DRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEA-------EAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1803357890 1256 QLEKAKLELE------EAQDTVSNLHQQVQDRNEVIEAANE 1290
Cdd:PRK02224 580 KLAELKERIEslerirTLLAAIADAEDEIERLREKREALAE 620
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-781 |
5.35e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 5.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 151 SRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMV--------------IEKEQSLQESKEE 216
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeeqlrvkekIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 217 CIKLKVDLLEQT-KQGKRAERQRNEALYNAEELSKAFQQYKKKVA---EKLEKVQAEEEILERNLTNCEKENKRLQERCG 292
Cdd:TIGR02169 309 SIAEKERELEDAeERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 293 LYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVA 372
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 373 AQNERLDLCQQEIESsrvELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNK--------------EDRCIGCCEA-- 436
Cdd:TIGR02169 469 QELYDLKEEYDRVEK---ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqlgsvGERYATAIEVaa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 437 -----NKLVISELRIKLAIKEAEIQKL--HANLTANQLSQS------------------LITCNDSQESS---------- 481
Cdd:TIGR02169 546 gnrlnNVVVEDDAVAKEAIELLKRRKAgrATFLPLNKMRDErrdlsilsedgvigfavdLVEFDPKYEPAfkyvfgdtlv 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 482 --------------KLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMA 547
Cdd:TIGR02169 626 vedieaarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 548 HRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINT-- 625
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDle 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 626 ---EHEKICLAFEKAKKIHlEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIickqhhlesldRLLTESKGEMK 702
Cdd:TIGR02169 786 arlSHSRIPEIQAELSKLE-EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR-----------IDLKEQIKSIE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 703 KENMKKDEALKALQNQVSEETIKVRQLDSALEICK---EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSL 779
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
..
gi 1803357890 780 QE 781
Cdd:TIGR02169 934 SE 935
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
646-1183 |
9.07e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 9.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 646 KEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIK 725
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 726 VRQldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVilqhtlqqqqqmlqqeti 805
Cdd:TIGR04523 116 KEQ--------KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE------------------ 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 806 rngELEDTQTKLEKQVSKLEQELQKQR------ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKE 879
Cdd:TIGR04523 170 ---ELENELNLLEKEKLNIQKNIDKIKnkllklELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 880 ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVK----ELEKLQHSTETELTEALQKR-EVLETELQNA 954
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlksEISDLNNQKEQDWNKELKSElKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 955 HGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemDQALKERNWELKQRAAQVTHLDMT 1034
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 1115 VMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKD 1183
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
932-1138 |
9.55e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 9.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 932 STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 1011
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1012 QALKERNWELkQRAAQVTHLDMTIR-EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1090
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1803357890 1091 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1138
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
111-661 |
1.14e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 111 QEIKSLREKLNKLRQQnacLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLR 190
Cdd:COG1196 274 LELEELELELEEAQAE---EYELLAELARLEQDIARLEERRRELEERLEELEEELAE---LEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 191 EAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEE 270
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 271 EILERNLTNCEKENKRLQERcglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENK 350
Cdd:COG1196 428 EALAELEEEEEEEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 351 DEILRDKFSLMNENRELKVRVAAQNERLDlcqqEIESSRVELRSLEKIISQLPLKRElfgfksylskyqmssfsNKEDRC 430
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGV----EAAYEAALEAALAAALQNIVVEDD-----------------EVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 431 IGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLetepvklgghQVAESVKDQNQHTM 510
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL----------GDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 511 nkqyEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEE 590
Cdd:COG1196 633 ----EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1803357890 591 KIVAYSSIAAKNAELEQELMEKNEKIRSLEtNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEK 661
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELL-EELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
936-1315 |
1.26e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 936 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTTIKDLTAELRECKMEIEDKKQELlemdQA 1013
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERL----EE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1014 LKERNWELKQRAAQVTHLDMTIREHRGEMEQKiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1093
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEEL---LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1094 EISQLKKEIERTQ--QRMKEMESV------------MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQV 1159
Cdd:COG4717 228 ELEQLENELEAAAleERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1160 QAQREIERLSSE--LEDMKQLSKEKDAHGNHLAEELG-ASKVREAHLEARM---QAEIKKLSAEVESLKEAYHMEMISHQ 1233
Cdd:COG4717 308 QALPALEELEEEelEELLAALGLPPDLSPEELLELLDrIEELQELLREAEEleeELQLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1234 ENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS--NLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
....
gi 1803357890 1312 AEDI 1315
Cdd:COG4717 468 DGEL 471
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
179-950 |
1.27e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 179 EAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEAlynAEELSKAFQQYKKK 258
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE-------ISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 259 VAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngkekLRIMAVKNSEVMAQLTESRQ 338
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-------IEEERKRRDKLTEEYAELKE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 339 SILKLESELENKDEilrdkfslmnENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKY 418
Cdd:TIGR02169 365 ELEDLRAELEEVDK----------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 419 QMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLtaNQLSQSLitcndSQESSKLSSLET-----EPVKL 493
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY--DRVEKEL-----SKLQRELAEAEAqarasEERVR 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 494 GGHQVAESVKDQNQ--HTMNKQYEKERQRLVTGIE-------------------------------------------EL 528
Cdd:TIGR02169 508 GGRAVEEVLKASIQgvHGTVAQLGSVGERYATAIEvaagnrlnnvvveddavakeaiellkrrkagratflplnkmrdER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 529 RTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCS-QLLTLEKQLEEK-------IVAYSSIAA 600
Cdd:TIGR02169 588 RDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKyRMVTLEGELFEKsgamtggSRAPRGGIL 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 601 KNAELEQELMEKNEKIRSLETNINTEHEKIC----LAFEKAKKIHL--EQHKEMEKQIERLEAQLEKKDQQFKEQEKTMS 674
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRrienRLDELSQELSDasRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 675 MLQQDIICKQHHLESLDrlltESKGEMKKENMKKDEALKALQNQVSEETIK-VRQLDSALEICKEELVLHLNQLEG--NK 751
Cdd:TIGR02169 748 SLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHSRIPeIQAELSKLEEEVSRIEARLREIEQklNR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 752 EKFEKQ-LKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlqqetirNGELEDTQTKLEKQVSKLEQ---- 826
Cdd:TIGR02169 824 LTLEKEyLEKEIQELQEQRIDLKEQIKSIEKEIENL--------------------NGKKEELEEELEELEAALRDlesr 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 827 --ELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEimhlkrdgenkamhlSQ 904
Cdd:TIGR02169 884 lgDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI---------------PE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 905 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEAL-------QKREVLETE 950
Cdd:TIGR02169 949 EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLkrldelkEKRAKLEEE 1001
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-1301 |
1.64e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 558 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKA 637
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 638 KKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALK---- 713
Cdd:pfam02463 256 SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKkeke 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 714 ---ALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 790
Cdd:pfam02463 336 eieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 791 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLR--KMEEKCESAAHEADLKRQKVIELTGTAR 868
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELelKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 869 QVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLD----------MILDQTKTELEKKTNAVKELEKLQHSTETELT 938
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDlgvavenykvAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1019 WELKQRA-AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1097
Cdd:pfam02463 656 EGLAEKSeVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1098 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1177
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1178 LSKEKDAHGNHLAEELgASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQL 1257
Cdd:pfam02463 816 LLEEEQLLIEQEEKIK-EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1803357890 1258 EKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1301
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-972 |
2.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 441 ISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEpvklgghqVAESVKDQN-QHTMNKQYEKERQ 519
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE--------LARLEQDIArLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 520 RLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIA 599
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 600 AKNAELEQELMEKNEKIRSLETNINTEHEKIcLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQD 679
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEAL-AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 680 IICKQHHLESLDRLLtESKGEMKKENMKKDEALKALQN---------QVSEETIKVRQLDSALEICKEELVLHLN-QLEG 749
Cdd:COG1196 479 LAELLEELAEAAARL-LLLLEAEADYEGFLEGVKAALLlaglrglagAVAVLIGVEAAYEAALEAALAAALQNIVvEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 750 NKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTqTKLEKQVSKLEQELQ 829
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT-LLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 830 KQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMIL 909
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 910 DQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVL 972
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
816-1305 |
2.37e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 816 KLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDG 895
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKK----EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 896 ENKAMHLSQLDMiLDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 975
Cdd:TIGR04523 197 LKLELLLSNLKK-KIQKNKSLESQIS---ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 976 QLSLEEKYTTIKDLTAELRECKMEIEDKKQE--------------------------LLEMDQALKERNWELKQRAAQVT 1029
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwnkelkselknqekkleeiqnqISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1030 HLDMTIREHRGEMEQK---IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQ 1106
Cdd:TIGR04523 353 NSESENSEKQRELEEKqneIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1107 QRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1186
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1187 NHLAEELGASKVREAHLEarmqAEIKKLSAEVESLKEayHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1266
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLE----SEKKEKESKISDLED--ELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEE 586
|
490 500 510
....*....|....*....|....*....|....*....
gi 1803357890 1267 AQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAK 1305
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1095-1314 |
3.18e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1095 ISQLKKEIERTQQRMKEMES-------VMKEQEQYI---------ATQYKE---------AIDLGQELRLTREQVQNSHT 1149
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnlerledILGELERQLeplerqaekAERYRElkeelkeleAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1150 ELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAyHMEM 1229
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1230 ISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGH 1309
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
....*
gi 1803357890 1310 EKAED 1314
Cdd:COG1196 406 EEAEE 410
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1035-1224 |
3.24e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 3.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1115 VMKEQEQ---------------------YIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE 1173
Cdd:COG4942 112 ALYRLGRqpplalllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1803357890 1174 DMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1224
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
985-1299 |
3.72e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 3.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 985 TIKDLTAELRECKMEIEDKKQELLEM---------DQALkernwELKQRAA---QVTHLDMTIREH---RGEMEQKIIKL 1049
Cdd:COG4913 156 DIRALKARLKKQGVEFFDSFSAYLARlrrrlgigsEKAL-----RLLHKTQsfkPIGDLDDFVREYmleEPDTFEAADAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1050 EG---TLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIM-----LQNEQEISQLKKEIERTQQRMKEMEsv 1115
Cdd:COG4913 231 VEhfdDLERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRaalrlWFAQRRLELLEAELEELRAELARLE-- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1116 mkEQEQyiatqykeaiDLGQELRLTREQVQNSHTELAEARHQQVQA-QREIERLSSELEDMKQLSKEKDAhgnhLAEELG 1194
Cdd:COG4913 309 --AELE----------RLEARLDALREELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEA----LLAALG 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1195 ASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEmishqenhakwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNL 1274
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEA--------------LAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
330 340
....*....|....*....|....*
gi 1803357890 1275 HQQVQdrnEVIEAANEALLTKESEL 1299
Cdd:COG4913 439 PARLL---ALRDALAEALGLDEAEL 460
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-402 |
5.82e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLE-SAQQQAASVPILEEQIINLEAEVSAQDKVL 189
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaQIEQLKEELKALREALDELRAELTLLNEEA 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 190 REAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAF---QQYKKKVAEKLEKV 266
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELEEL 899
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 267 QAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEE-NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLES 345
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1803357890 346 ELENKDEIlrdKFSLMNENRELKvrvaaqnERLDLCQQEIESSRVELRSLEKIISQL 402
Cdd:TIGR02168 980 KIKELGPV---NLAAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
721-1319 |
1.09e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 721 EETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKEL--KIKNHSLQETSEQNVILQHTLQQQQQ 798
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRRERekAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 799 MLQQETIRN--GELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESaahEADLKRQKVIELTGTARQVKIEMDQ 876
Cdd:TIGR02169 236 ERQKEAIERqlASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 877 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKlqhstetELTEALQKREVLETELQNAHG 956
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------ELEDLRAELEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVthldMTIR 1036
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL----EQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1037 EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE----KEFIMLQNEQEISQLKKEIERTQQRMKEM 1112
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGgravEEVLKASIQGVHGTVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1113 ESVMKEQEQYIATQ----YKEAIDLGQELRLTR------EQVQNSHTEL----------------------AEARHQQVQ 1160
Cdd:TIGR02169 542 EVAAGNRLNNVVVEddavAKEAIELLKRRKAGRatflplNKMRDERRDLsilsedgvigfavdlvefdpkyEPAFKYVFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1161 AQREIERLSSELEDMKQ----------LSKEKDAHGNHLAEELGAS-KVREAHLEARMQAEIKKLSAEVESLkeayhMEM 1229
Cdd:TIGR02169 622 DTLVVEDIEAARRLMGKyrmvtlegelFEKSGAMTGGSRAPRGGILfSRSEPAELQRLRERLEGLKRELSSL-----QSE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1230 ISHQENH---AKWKISADSQKSS-----VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1301
Cdd:TIGR02169 697 LRRIENRldeLSQELSDASRKIGeiekeIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
650
....*....|....*...
gi 1803357890 1302 LQAKISGHEKAEDIKFLP 1319
Cdd:TIGR02169 777 LEEALNDLEARLSHSRIP 794
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1084-1330 |
1.32e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.18 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1084 KEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtQYKEA---IDLGQELRLTREQVQNSHTELAEARHQQVQ 1160
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE-EFRQKnglVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1161 AQREIERLSSELEDMKQLSKE--KDAHGNHLAEELGASKVREAHLEARMQAE---IKKLSAEVESLKEAYHMEMishQEN 1235
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNhpdVIALRAQIAALRAQLQQEA---QRI 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1236 HAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRnEVIEAANEALLTKeseltRLQAKISGHEKAEDI 1315
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV-EVARELYESLLQR-----LEEARLAEALTVGNV 388
|
250
....*....|....*
gi 1803357890 1316 KFLPAPFTSPTEIMP 1330
Cdd:COG3206 389 RVIDPAVVPLKPVSP 403
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-680 |
2.21e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 147 ELTQSRAKVSMLESAQQQaasvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 254 ELEELEAELAELEAELEE------LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 227 QTKQGKRAERQRNEALYNAEELSKAFQQykkkVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEE----AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 307 QLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 387 SSRVELRSLEKIISQLPLKRELFGFKSYLSKyqmssfsNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANq 466
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAAL-------LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED- 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 467 lSQSLITCNDSQESSK--------LSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAE 538
Cdd:COG1196 556 -DEVAAAAIEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 539 NSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRS 618
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1803357890 619 LETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDI 680
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
562-1146 |
2.46e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 562 EKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAyssiaaknaelEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIH 641
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQEQLQA-----------ETELCAEAEEMRARLAARKQELEEILHELESRLEEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 642 LEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDR---LLTESKGEMKKENMKKDEALKALQNQ 718
Cdd:pfam01576 88 EERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEdilLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 719 VSEETIKVR---QLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQ 795
Cdd:pfam01576 168 LAEEEEKAKslsKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 796 QQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQR--ESSAEKLRK------------MEEKCESAAHEADLKRQKVI 861
Cdd:pfam01576 248 ALARLEEETAQKNNALKKIRELEAQISELQEDLESERaaRNKAEKQRRdlgeelealkteLEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 862 ELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNavkELEKLQHSTETELTEAL 941
Cdd:pfam01576 328 EVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENA---ELQAELRTLQQAKQDSE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 942 QKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKErnwEL 1021
Cdd:pfam01576 405 HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE---ET 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1022 KQRAAQVTHLDMTIREHRGEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKE 1101
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQ--------LEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1803357890 1102 IERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQN 1146
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSN 598
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-394 |
2.62e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 110 DQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQ-QQAASVPILEEQIINLEAEVSAQDKV 188
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 189 LREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQA 268
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAE-------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 269 eeeiLERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngKEKLRIMAVKNSEVMAQLTESRQSilkLESELE 348
Cdd:TIGR02168 829 ----LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL----IEELESELEALLNERASLEEALAL---LRSELE 897
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1803357890 349 NKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRS 394
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-402 |
2.71e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 147 ELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 223 KELEAELLLLKLRELEAELEE---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 227 QTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 307 QLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250
....*....|....*.
gi 1803357890 387 SSRVELRSLEKIISQL 402
Cdd:COG1196 460 ALLELLAELLEEAALL 475
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
500-1076 |
3.67e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 500 ESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKAS----NSSKLESEMT 575
Cdd:pfam15921 248 EALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLESTVS 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 576 KKCSQLLTLEKQLEEKIvayssiaaknAELEQELMEKNEKIrsleTNINTEHEKIClafekakkihlEQHKEMEKQIERL 655
Cdd:pfam15921 328 QLRSELREAKRMYEDKI----------EELEKQLVLANSEL----TEARTERDQFS-----------QESGNLDDQLQKL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 656 EAQLEKKDQQF---KEQEK-----------TMSMLQQDIICKQHHLESLDRLLTESKGEMKKEnmkKDEALKALQNQvSE 721
Cdd:pfam15921 383 LADLHKREKELsleKEQNKrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ---MERQMAAIQGK-NE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 722 ETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQ-KELKIKNHSLQETSEQNVILQHTLQQQQQML 800
Cdd:pfam15921 459 SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQeKERAIEATNAEITKLRSRVDLKLQELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 801 QQETIRNGELEDTQTKLE-----KQVSKLEQEL--------QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTA 867
Cdd:pfam15921 539 EGDHLRNVQTECEALKLQmaekdKVIEILRQQIenmtqlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDA 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 868 RQVKIEmdqykEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVL 947
Cdd:pfam15921 619 KIRELE-----ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN---ELNSLSEDYEVLKRNFRNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 948 ETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWE---LKQR 1024
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEE 770
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1803357890 1025 AAQVTHLDMTIREHRGEM--------------EQKIIKLEGTLEKSELELKECNKQI-----ESLNDKLQN 1076
Cdd:pfam15921 771 KNKLSQELSTVATEKNKMagelevlrsqerrlKEKVANMEVALDKASLQFAECQDIIqrqeqESVRLKLQH 841
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1043-1224 |
4.30e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1043 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1122
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1123 IATQYKEAIDLGQ----ELRLTREQVQNS------HTELAEARHQQVQAQR----EIERLSSELEDMKQLSKEKDAHGNH 1188
Cdd:COG4942 106 LAELLRALYRLGRqpplALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRadlaELAALRAELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 1803357890 1189 LAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1224
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
960-1168 |
4.48e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 960 STLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECkmeiedkkQELLEMDQALKERNWELKQRAAqvthLDMTIREHR 1039
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDAL--------QERREALQRLAEYSWDEIDVAS----AEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1040 GEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:COG4913 675 AELER--------LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1803357890 1120 EQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHqqvQAQREIERL 1168
Cdd:COG4913 747 LRALLEERFAAALGDAVERELRENLEERIDALRARLN---RAEEELERA 792
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
725-1301 |
6.87e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 6.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 725 KVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEvycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQET 804
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREA---LQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 805 IRNGE--LEDTQTKLEKQVSK---------LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQkviELTGTARQVKIE 873
Cdd:TIGR00618 272 LRAQEavLEETQERINRARKAaplaahikaVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ---QSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 874 MDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAV-KELEKLQHSTETELTEaLQKREVLETELQ 952
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLcKELDILQREQATIDTR-TSAFRDLQGQLA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 953 NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLD 1032
Cdd:TIGR00618 428 HAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLC 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1033 MTIREHRGEMEQKIIK--LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1110
Cdd:TIGR00618 508 GSCIHPNPARQDIDNPgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1111 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHgnhla 1190
Cdd:TIGR00618 588 NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE----- 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1191 eELGASKVREAHLEARMQAEIKKLSAEVESLkeAYHMEMISH-------QENHAK--------WKISADSQKSSVQQLNE 1255
Cdd:TIGR00618 663 -HALSIRVLPKELLASRQLALQKMQSEKEQL--TYWKEMLAQcqtllreLETHIEeydrefneIENASSSLGSDLAARED 739
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1803357890 1256 QLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1301
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
906-1314 |
7.50e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 7.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 906 DMILDQTKTElEKKTNAVKELEKLqHSTETELTEALQKREVLE--TELQNAHGELKSTLRQLQELRDVL-----QKAQLS 978
Cdd:COG4913 215 EYMLEEPDTF-EAADALVEHFDDL-ERAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALrlwfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 979 LEEKYTT----IKDLTAELRECKMEIEDKKQELLEMDQALKERNW----ELKQRAAQVTHLDMTIREHRGEMEQKIIKLE 1050
Cdd:COG4913 293 LEAELEElraeLARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1051 GTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFimlQNEQEISQLKKEIERTQQRMKEMES---------------- 1114
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALA---EAEAALRDLRRELRELEAEIASLERrksniparllalrdal 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1115 -------------------VMKEQ-------EQYI----------------ATQYKEAIDLGQELRLTREQVQNSHTELA 1152
Cdd:COG4913 450 aealgldeaelpfvgelieVRPEEerwrgaiERVLggfaltllvppehyaaALRWVNRLHLRGRLVYERVRTGLPDPERP 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1153 EARHQQVQAQREIER------LSSEL---------EDMKQLSKEKDA-------HGNHLAEE------------LGAS-K 1197
Cdd:COG4913 530 RLDPDSLAGKLDFKPhpfrawLEAELgrrfdyvcvDSPEELRRHPRAitragqvKGNGTRHEkddrrrirsryvLGFDnR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1198 VREAHLEARM---QAEIKKLSAEVESLKEAYHmEMISHQENHAKWK------ISADSQKSSVQQLNEQLEkaklELEEAQ 1268
Cdd:COG4913 610 AKLAALEAELaelEEELAEAEERLEALEAELD-ALQERREALQRLAeyswdeIDVASAEREIAELEAELE----RLDASS 684
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1803357890 1269 DTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAED 1314
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
954-1174 |
7.94e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 7.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 954 AHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM 1033
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1034 TIREHRGEMEQKIIKLEGTLEKSELEL---KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1110
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1803357890 1111 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNshtELAEARHQQVQAQREIERLSSELED 1174
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAA 238
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
948-1155 |
9.37e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 9.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 948 ETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAA- 1026
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARa 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1027 ------QVTHLDM------------------TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1082
Cdd:COG3883 95 lyrsggSVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 1083 EKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR 1155
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
804-1281 |
1.11e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 804 TIRNGELEDTQTKLEKQVSKLEQELQKQR-ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK-IEMDQYKEEL 881
Cdd:COG4913 268 RERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 882 SKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEkktNAVKELEKLQHSTETELTEALQKRevleTELQNAHGELKST 961
Cdd:COG4913 348 ERLERELEERERRRARLEALLAALGLPLPASAEEFA---ALRAEAAALLEALEEELEALEEAL----AEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 962 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAElrECKMEIEDKK--QELLEMDQalKERNWEL----------------KQ 1023
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAE--ALGLDEAELPfvGELIEVRP--EEERWRGaiervlggfaltllvpPE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1024 RAAQV------THLDMTIREHRGEMEQKIIKLEGTLEKS---ELELKEcNKQIESLNDKLQ------------------- 1075
Cdd:COG4913 497 HYAAAlrwvnrLHLRGRLVYERVRTGLPDPERPRLDPDSlagKLDFKP-HPFRAWLEAELGrrfdyvcvdspeelrrhpr 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1076 -----------------NAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1138
Cdd:COG4913 576 aitragqvkgngtrhekDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1139 LTREQVqnshtELAEARHQQVQAQREIERL---SSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLE---ARMQAEIK 1212
Cdd:COG4913 656 YSWDEI-----DVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEkelEQAEEELD 730
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 1213 KLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDR 1281
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
814-1209 |
1.24e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 53.21 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 814 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 893
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 894 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREvletELQNAHGELKSTLRQLQELRDVLQ 973
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE----ELQERLDLLKAKASEAEQLRQNLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 974 KAQLSLEEKYTTIKDLTAELR---ECKMEIEDKKQELLEMDQALKernwELKQRAAQVTHLDMTIR-------------- 1036
Cdd:pfam05557 160 KQQSSLAEAEQRIKELEFEIQsqeQDSEIVKNSKSELARIPELEK----ELERLREHNKHLNENIEnklllkeevedlkr 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1037 --EHRGEMEQKIIKLEGTLEKSELELKECNK-----------------QIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1097
Cdd:pfam05557 236 klEREEKYREEAATLELEKEKLEQELQSWVKlaqdtglnlrspedlsrRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1098 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQReIERLSSELEDMKQ 1177
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER-IEEAEDMTQKMQA 394
|
410 420 430
....*....|....*....|....*....|..
gi 1803357890 1178 LSKEKDAHGNHLAEELGASKVREAHLEARMQA 1209
Cdd:pfam05557 395 HNEEMEAQLSVAEEELGGYKQQAQTLERELQA 426
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
505-1154 |
1.26e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 505 QNQHTMNKQYEKERQRLVTGIEELRTKLIqiEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTL 584
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQLLKQLRARIE--ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 585 EKQLEEKIVAYSSIAAKNAELEQElmeknekiRSLETNINTEHEKICLAFEKAKKI--HLEQHKEMEKQIERLEAQLEKK 662
Cdd:TIGR00618 320 MRSRAKLLMKRAAHVKQQSSIEEQ--------RRLLQTLHSQEIHIRDAHEVATSIreISCQQHTLTQHIHTLQQQKTTL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 663 DQQFKEQEKTMSMLQ--QDIICKQHHLESLDRL-LTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEE 739
Cdd:TIGR00618 392 TQKLQSLCKELDILQreQATIDTRTSAFRDLQGqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 740 LvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKiknhSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEK 819
Cdd:TIGR00618 472 E-----QQLQTKEQIHLQETRKKAVVLARLLELQ----EEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 820 QVSKLEQELQKQRESSAEKLRKMEEKCESAAHEAdLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENK- 898
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT-QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 899 --AMHLSQLDMILDQTKTELEKKTNAVK--ELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQK 974
Cdd:TIGR00618 622 qpEQDLQDVRLHLQQCSQELALKLTALHalQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 975 AQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLE 1054
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELS 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1055 KSELELKECNKQIESLNDKLQNAKEQLREK-EFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEAIDL 1133
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE----ITHQLLKYEEC 857
|
650 660
....*....|....*....|.
gi 1803357890 1134 GQELRLTREQVQNSHTELAEA 1154
Cdd:TIGR00618 858 SKQLAQLTQEQAKIIQLSDKL 878
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
809-1028 |
1.52e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 809 ELEDTQTKLEKQVSKLEQeLQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEI 888
Cdd:COG4942 28 ELEQLQQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 889 MHLKRDGEnKAMHLSQLDMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQE 967
Cdd:COG4942 107 AELLRALY-RLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1803357890 968 LRDVLQKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 1028
Cdd:COG4942 186 ERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1048-1212 |
1.68e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 52.47 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1048 KLEGTLEKSELELKECNKQIESLN-DKLQNAKEQLREKEfimLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQ 1126
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKkEALLEAKEEIHKLR---NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1127 YKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE------LEDMKQLSKEkDAhgnhlaeelgASKVRE 1200
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARH-EA----------AVLIKE 177
|
170
....*....|..
gi 1803357890 1201 AHLEARMQAEIK 1212
Cdd:PRK12704 178 IEEEAKEEADKK 189
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
505-1268 |
2.26e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 505 QNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEmtkkcSQLLTL 584
Cdd:TIGR00606 308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATR-----LELDGF 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 585 EKQleekivAYSSIAAKNA-ELEQELMEknEKIRSLETNINTEHEKICLAFEKAKKIHLEQhKEMEKQIERLEAQLEKKD 663
Cdd:TIGR00606 383 ERG------PFSERQIKNFhTLVIERQE--DEAKTAAQLCADLQSKERLKQEQADEIRDEK-KGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 664 QQFKEQEKTMSMLQ---QDIICKQHHLESLDRLLTESKGEMKKENMKKDEalKALQNQVSEETIKVRQLDSALEickeel 740
Cdd:TIGR00606 454 EELKFVIKELQQLEgssDRILELDQELRKAERELSKAEKNSLTETLKKEV--KSLQNEKADLDRKLRKLDQEME------ 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 741 vlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKIK-NHSLQETSEQNVILQHTLQQQQQMLQQETIRngELEDTQTKLEK 819
Cdd:TIGR00606 526 -----QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKsRHSDELTSLLGYFPNKKQLEDWLHSKSKEIN--QTRDRLAKLNK 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 820 QVSKLEQ---ELQKQRESSAEKLRKMEEK----CESAAHEADLKRQKViELTGTARQVKI------EMDQYKEELSKMEK 886
Cdd:TIGR00606 599 ELASLEQnknHINNELESKEEQLSSYEDKlfdvCGSQDEESDLERLKE-EIEKSSKQRAMlagataVYSQFITQLTDENQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 887 EIMHL-KRDGENKAmhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQL 965
Cdd:TIGR00606 678 SCCPVcQRVFQTEA----ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 966 QELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-QELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ 1044
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE 833
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1045 KIIKLEGTLEKSELELK---ECNKQIESLNDK---LQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKE------- 1111
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKliqDQQEQIQHLKSKtneLKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDakeqdsp 913
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1112 ----MESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE--------ARHQQVQAQREIERLSSELEDMKQLS 1179
Cdd:TIGR00606 914 letfLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdgKDDYLKQKETELNTVNAQLEECEKHQ 993
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1180 KEKDAHGNHLAEELGASKVREAHLEARM-----QAEIKKLSAEVES-LKEAYHMEMISHQENHAKWKISADSQKSS---- 1249
Cdd:TIGR00606 994 EKINEDMRLMRQDIDTQKIQERWLQDNLtlrkrENELKEVEEELKQhLKEMGQMQVLQMKQEHQKLEENIDLIKRNhvla 1073
|
810 820
....*....|....*....|..
gi 1803357890 1250 ---VQQLNEQLEKAKLELEEAQ 1268
Cdd:TIGR00606 1074 lgrQKGYEKEIKHFKKELREPQ 1095
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
873-1085 |
2.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 873 EMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQ 952
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 953 NAHGELKSTLRQLQELRD-------VLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRA 1025
Cdd:COG4942 101 AQKEELAELLRALYRLGRqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1026 AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKE 1085
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
879-1266 |
2.49e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 879 EELSKMEKEIMHLKrDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGEL 958
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 959 ---KSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwELKQRAAQVthldMTI 1035
Cdd:PRK03918 224 eklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEY----IKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqneqeisQLKKEIERTQQRMKEMESV 1115
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-----------ELEKRLEELEERHELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1116 MKEQEQyiATQYKEaidlgqelRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGA 1195
Cdd:PRK03918 368 KAKKEE--LERLKK--------RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 1196 SKV--------REAHLEARMQAEIKKLSAEVESLKEAyhMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1266
Cdd:PRK03918 438 CPVcgrelteeHRKELLEEYTAELKRIEKELKEIEEK--ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
534-1217 |
3.55e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 534 QIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKcSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKN 613
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQEN-KDLIKENNATRHLCNLLKETCARSAEKTKKYEYER 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 614 EKIRSLETNINTEHEKICLAFE----KAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLES 689
Cdd:pfam05483 179 EETRQVYMDLNNNIEKMILAFEelrvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKD 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 690 LDRLLTESKGEMKKenmkKDEALKALQNQVSEETIKVRQLDSALEickeELVLHLNQLEGNKEKFEKQLKKKSEEVYCL- 768
Cdd:pfam05483 259 LTFLLEESRDKANQ----LEEKTKLQDENLKELIEKKDHLTKELE----DIKMSLQRSMSTQKALEEDLQIATKTICQLt 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 769 -QKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRN------GELEDTQTKLEKQVSKLEQ--ELQKQRESSAEKL 839
Cdd:pfam05483 331 eEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQrlekneDQLKIITMELQKKSSELEEmtKFKNNKEVELEEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 840 RKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildqtKTELEKK 919
Cdd:pfam05483 411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL-------KTELEKE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 920 TNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQkaqlSLEEKYTTIKDltaelreckmE 999
Cdd:pfam05483 484 KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE----NLEEKEMNLRD----------E 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1000 IEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKE 1079
Cdd:pfam05483 550 LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENK 629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1080 QLREKEFIMLQNEQEISQLKKEIER-TQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE----A 1154
Cdd:pfam05483 630 QLNAYEIKVNKLELELASAKQKFEEiIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEmvalM 709
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 1155 RHQQVQAQREIERLSSELEDMKqlSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAE 1217
Cdd:pfam05483 710 EKHKHQYDKIIEERDSELGLYK--NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKE 770
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
512-1046 |
3.58e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 592 ---IVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIhLEQHKEMEKQIERLEAQLEKKDQQFKE 668
Cdd:TIGR04523 214 kslESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI-KKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 669 QEKTMSMLQQDiicKQHHLESldrllteskgEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlNQLE 748
Cdd:TIGR04523 293 LKSEISDLNNQ---KEQDWNK----------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL----TNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 749 GNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQEL 828
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 829 QKQRE---SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHL---KRDGENKAMHL 902
Cdd:TIGR04523 436 IKNNSeikDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 903 ----SQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLE-----TELQNAHGELKSTLRQLQELRDVLQ 973
Cdd:TIGR04523 516 tkkiSSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEknkeiEELKQTQKSLKKKQEEKQELIDQKE 595
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 974 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKI 1046
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKI 668
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
593-1226 |
4.03e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 593 VAYSSIAAKNAELEQELMEkneKIRSLETNINTEhEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT 672
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEK---KLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 673 MSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEAlKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKE 752
Cdd:TIGR04523 98 INKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKEN-KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 753 KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLeQELQKQR 832
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI-SNTQTQL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 833 ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEE-----LSKMEKEIMHLKRDGENKAMHLSQLDM 907
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNK 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 908 ILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK 987
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 988 DLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTirehRGEMEQKIIKLEGTLEKSELELKECNKQI 1067
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT----RESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1068 ESLNDKLQNAKEQLRekefimlQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQElrLTREQVQNS 1147
Cdd:TIGR04523 492 KSKEKELKKLNEEKK-------ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE--LKKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1148 HTELAEARHQQVQAQREIERLSSEL-EDMKQLSKEKDAHGNHLAEELGASKVREAHLEaRMQAEIKKLSAEVESLKEAYH 1226
Cdd:TIGR04523 563 IDEKNKEIEELKQTQKSLKKKQEEKqELIDQKEKEKKDLIKEIEEKEKKISSLEKELE-KAKKENEKLSSIIKNIKSKKN 641
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
190-830 |
4.11e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 190 REAENKLEQSQkmviEKEQSLQeskeeciklkvDLL-EQTKQGKRAERQRNEALyNAEELSKAFQQYKKKV-AEKLEKVQ 267
Cdd:COG1196 175 EEAERKLEATE----ENLERLE-----------DILgELERQLEPLERQAEKAE-RYRELKEELKELEAELlLLKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRimavknsEVMAQLTESRQSIlklESEL 347
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-------ELLAELARLEQDI---ARLE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 348 ENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELfgfksylskyQMSSFSNKE 427
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE----------AEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 428 DrcigccEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQ 507
Cdd:COG1196 379 E------ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 508 htmnkQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLE--------KASNSSKLESEMTKKCS 579
Cdd:COG1196 453 -----ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflegvKAALLLAGLRGLAGAVA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 580 QLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKnEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQ-----IER 654
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAA-AAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlVAS 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 655 LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSAle 734
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL-- 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 735 icKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQ 814
Cdd:COG1196 685 --AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
650
....*....|....*.
gi 1803357890 815 TKLEKQVSKLEQELQK 830
Cdd:COG1196 763 EELERELERLEREIEA 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
909-1121 |
4.67e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 909 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD 988
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 989 LTAELreCKMEIEDKKQELL---------EMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELE 1059
Cdd:COG4942 109 LLRAL--YRLGRQPPLALLLspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1803357890 1060 LKECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKEIERTQQRMKEMESVMKEQEQ 1121
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELA-------AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1036-1312 |
5.31e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLN------DKLQNAKEQLREKEFIMLQNEqeISQLKKEIERTQQRM 1109
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLR--LEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1110 KEMESVMKEQEQYIATqykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLsselEDMKQLSKEKDAHGNHL 1189
Cdd:TIGR02168 249 KEAEEELEELTAELQE-------LEEKLEELRLEVSELEEEIEELQKELYALANEISRL----EQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1190 AEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWkisadsqkssvQQLNEQLEKAKLELEEAQD 1269
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-----------EELESRLEELEEQLETLRS 386
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1803357890 1270 TVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKA 1312
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
487-995 |
5.43e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 5.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 487 ETEPV-KLGGHQVAESVKDQNQHTMNKQYEKERQRL------VTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEE 559
Cdd:PRK02224 201 EKDLHeRLNGLESELAELDEEIERYEEQREQARETRdeadevLEEHEERREELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 560 LLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKK 639
Cdd:PRK02224 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 640 IHlEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQ---DIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ 716
Cdd:PRK02224 361 LR-EEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 717 NQVSEEtikvRQLDSA-------LEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKiKNHSLQETSEQnvIL 789
Cdd:PRK02224 440 ERVEEA----EALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE-RAEDLVEAEDR--IE 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 790 QHTLQQQQQMLQQETIRNG--ELEDTQTKLEKQVSKLEQELQKQRESSAEklrkmeekcesAAHEADLKRQKVIELTGTA 867
Cdd:PRK02224 513 RLEERREDLEELIAERRETieEKRERAEELRERAAELEAEAEEKREAAAE-----------AEEEAEEAREEVAELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 868 RQVKIEMDQYkEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKEL---------EKLQHSTET--- 935
Cdd:PRK02224 582 AELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELeaefdeariEEAREDKERaee 660
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 936 ---ELTEALQKREVLETELQNAHGELKSTLRQLQELRD---VLQKAQLSLEEKY-------TTIKDLTAELRE 995
Cdd:PRK02224 661 yleQVEEKLDELREERDDLQAEIGAVENELEELEELRErreALENRVEALEALYdeaeeleSMYGDLRAELRQ 733
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
114-923 |
6.79e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 6.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 114 KSLREKLNKLRQQNACLVTQNHSLMTKFESIHfELTQSRAKVSMLESAQQQAAsvpilEEQIINLEAEVSAQDKVLREAE 193
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEK-KLQEEELKLLAKEEEELKSE-----LLKLERRKVDDEEKLKESEKEK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 194 NKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEIL 273
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 274 ERNLtncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEI 353
Cdd:pfam02463 404 EKEA-----------------QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 354 LRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKII---SQLPLKRELFGFKSYLSKYQMSSFSNKEDRC 430
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLlalIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 431 IGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTM 510
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 511 NKQYEKERQRLVTGIEELRTKLIQIEaENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEE 590
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGV-SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 591 KIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIhleQHKEMEKQIERLEAQLEKKDQQFKEQE 670
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS---RLKKEEKEEEKSELSLKEKELAEEREK 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 671 KTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGN 750
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 751 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 830
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLL 942
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 831 QRESSAEklrKMEEKCESAAHEADLKRQKVIELTgtaRQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILD 910
Cdd:pfam02463 943 EEADEKE---KEENNKEEEEERNKRLLLAKEELG---KVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETC 1016
|
810
....*....|...
gi 1803357890 911 QTKTELEKKTNAV 923
Cdd:pfam02463 1017 QRLKEFLELFVSI 1029
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
111-1002 |
7.19e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 7.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 111 QEIKSLREKLNKLRQ----QNACLVTQNHSLMTKFESIHFElTQSRAKVSMLESaQQQAASVPILEEQIINLEAEVSAQD 186
Cdd:pfam15921 85 HQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRES-QSQEDLRNQLQNTVHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 187 KVLREAENKLEQSQKMVIEKEQSLQESKeeciKLKVDLLEQTkqGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKV 266
Cdd:pfam15921 163 DMLEDSNTQIEQLRKMMLSHEGVLQEIR----SILVDFEEAS--GKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 267 QAEEEILERNLTNCEKENK------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAV----KNSEVM 330
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQnkielllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnQNSMYM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 331 AQLTESRQSILKLESELENKDEILRDKFslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFG 410
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 411 FKSYLSKYQMSSFSNKEdrcigccEANKLVISELRIKLAIKEAEIQKLHAnltanqLSQSLITCNDSQESSKLSSLEtep 490
Cdd:pfam15921 391 KELSLEKEQNKRLWDRD-------TGNSITIDHLRRELDDRNMEVQRLEA------LLKAMKSECQGQMERQMAAIQ--- 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 491 vklGGHQVAESVKdqnqhTMNKQYEKERQRLVTGIEELRTKLIQIEAEN---SDLKVNMAHRTSQFQLIQEELlekasns 567
Cdd:pfam15921 455 ---GKNESLEKVS-----SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvSDLTASLQEKERAIEATNAEI------- 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 568 SKLESEMTKKCSQLLTLEKQLEEkivaYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIclafekakkihlEQHKE 647
Cdd:pfam15921 520 TKLRSRVDLKLQELQHLKNEGDH----LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV------------GQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 648 MEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDiicKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETikvr 727
Cdd:pfam15921 584 TAGAMQVEKAQLEKEINDRRLELQEFKILKDK---KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD---- 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 728 QLDSALEICKEElvlhLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlqQETIRN 807
Cdd:pfam15921 657 QLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT---------------RNTLKS 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 808 GELEDTQT-KLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEK 886
Cdd:pfam15921 718 MEGSDGHAmKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 887 EIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELeKLQHSTETELTE--------ALQKREVLETELQNAHGEL 958
Cdd:pfam15921 798 QERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL-KLQHTLDVKELQgpgytsnsSMKPRLLQPASFTRTHSNV 876
|
890 900 910 920
....*....|....*....|....*....|....*....|....
gi 1803357890 959 KSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1002
Cdd:pfam15921 877 PSSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPT 920
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
755-1298 |
8.17e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.59 E-value: 8.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 755 EKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTlqqqqqmlqqetirngELEDTQ-TKLEKQVSKLEQELQKQRE 833
Cdd:pfam10174 198 EVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVI----------------EMKDTKiSSLERNIRDLEDEVQMLKT 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 834 SSaekLRKMEEkcesaaHEADLKRQKVIEltGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 913
Cdd:pfam10174 262 NG---LLHTED------REEEIKQMEVYK--SHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 914 TELEKKTNAVKELEKLQHSTETELTEA---LQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKyttIKDLT 990
Cdd:pfam10174 331 ESLTAKEQRAAILQTEVDALRLRLEEKesfLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKK---IENLQ 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 991 AELReckmeieDKKQELLEmdqaLKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEgtlEKSELELKECNKQIESL 1070
Cdd:pfam10174 408 EQLR-------DKDKQLAG----LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLK---EQREREDRERLEELESL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1071 NDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTRE-------- 1142
Cdd:pfam10174 474 KKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNaeeavrtn 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1143 -----QVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLaeelgASKVREAHLEARMQAEIKKLSAE 1217
Cdd:pfam10174 554 peindRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAEL-----ESLTLRQMKEQNKKVANIKHGQQ 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1218 VESLKEAYHMEMISHQENHAKwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRN--------------- 1282
Cdd:pfam10174 629 EMKKKGAQLLEEARRREDNLA----DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDghltnlraerrkqle 704
|
570
....*....|....*.
gi 1803357890 1283 EVIEAANEALLTKESE 1298
Cdd:pfam10174 705 EILEMKQEALLAAISE 720
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
850-1208 |
9.38e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 9.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 850 AHEADLKRQKVI----ELTGTARQVKIEMDQYKE---ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTktelEKKTNA 922
Cdd:COG3096 277 ANERRELSERALelrrELFGARRQLAEEQYRLVEmarELEELSARESDLEQDYQAASDHLNLVQTALRQQ----EKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 923 VKELEKL------QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQ-------KAQLSLEE--KYTTIK 987
Cdd:COG3096 353 QEDLEELterleeQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqQAVQALEKarALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 988 DLTAElreckmEIEDKKQELLEMDQALKERNWELKQRAAQVthlDMTIREHRGEMeQKIIKLEGTLEKSelelkecnkqi 1067
Cdd:COG3096 433 DLTPE------NAEDYLAAFRAKEQQATEEVLELEQKLSVA---DAARRQFEKAY-ELVCKIAGEVERS----------- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1068 eslnDKLQNAKEQLRE-KEFIML-QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQ 1145
Cdd:COG3096 492 ----QAWQTARELLRRyRSQQALaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLE 567
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 1146 NSHTELAEARHQQVQAQREIERLSselEDMKQLSK------EKDAHGNHLAEELGASKVREAHLEARMQ 1208
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLR---ARIKELAArapawlAAQDALERLREQSGEALADSQEVTAAMQ 633
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1041-1224 |
9.60e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 9.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1120
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1121 -------------------------QYIATQYKEAID----LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE 1171
Cdd:COG3883 100 gsvsyldvllgsesfsdfldrlsalSKIADADADLLEelkaDKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1803357890 1172 LED-MKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1224
Cdd:COG3883 180 QEAlLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
940-1174 |
1.17e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 940 ALQKREVLETE---LQNAHGELKSTLRQLQELRDVLQKAQLS---LEEKYTTIKDLTAELRECkMEIEDKKQELLEMDQA 1013
Cdd:COG4913 608 NRAKLAALEAElaeLEEELAEAEERLEALEAELDALQERREAlqrLAEYSWDEIDVASAEREI-AELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1014 LKernwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1093
Cdd:COG4913 687 LA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1094 EISQLKKEIERTQQRMKEM-----ESVMKEQEQYIATQYKEAIDLGQELRlTREQVQNSHTELAE---ARHQQ------- 1158
Cdd:COG4913 763 VERELRENLEERIDALRARlnraeEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDRLEEdglPEYEErfkelln 841
|
250
....*....|....*.
gi 1803357890 1159 VQAQREIERLSSELED 1174
Cdd:COG4913 842 ENSIEFVADLLSKLRR 857
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
908-1291 |
1.25e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 908 ILDQTKTELEKKTNAVKELEklqhstETELTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSL---EEKYT 984
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKE------EKDLHERLNG---LESELAELDEEIERYEEQREQARETRDEADEVLeehEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 985 TIKDLTAELRECKMEIEDKKQEllemDQALKERnwelkqraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKEcN 1064
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETERE----REELAEE-----------------VRDLRERLEELEEERDDLLAEAGLDDAD-A 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1065 KQIESLNDKLQNAKEQLREKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQyiatqykEAIDLGQELRLTREQV 1144
Cdd:PRK02224 310 EAVEARREELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEELRE-------EAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1145 QNSHTELAEARhqqvqaqREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQaEIKKLSAEVESLKEA 1224
Cdd:PRK02224 380 EDRREEIEELE-------EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR-TARERVEEAEALLEA 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1803357890 1225 YHMEMISHQenhakwkISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEA 1291
Cdd:PRK02224 452 GKCPECGQP-------VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI 511
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
936-1304 |
1.50e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 936 ELTEALQKREVLETELQNAHGEL---KSTLRQ----------LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1002
Cdd:COG3096 314 ELEELSARESDLEQDYQAASDHLnlvQTALRQqekieryqedLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1003 KKQELLEMDQALKErnweLKQRAAQVthldmtirehrgemeQKIIKlegTLEKSELELKECNKQIESLNDKLQNAKEQLR 1082
Cdd:COG3096 394 LKSQLADYQQALDV----QQTRAIQY---------------QQAVQ---ALEKARALCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1083 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQY-KEAIDLGQELRLTREQVQNSHTELAEARhQQVQA 1161
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTaRELLRRYRSQQALAQRLQQLRAQLAELE-QRLRQ 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1162 QREIERLSSELEdmKQLSKEKDAhgnhlAEELgaskvreAHLEARMQAEIKKLSAEVESLKEAyHMEMiSHQENHAKWKI 1241
Cdd:COG3096 531 QQNAERLLEEFC--QRIGQQLDA-----AEEL-------EELLAELEAQLEELEEQAAEAVEQ-RSEL-RQQLEQLRARI 594
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1803357890 1242 SADSQKSSV------------QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEvIEAANEALltkESELTRLQA 1304
Cdd:COG3096 595 KELAARAPAwlaaqdalerlrEQSGEALADSQEVTAAMQQLLEREREATVERDE-LAARKQAL---ESQIERLSQ 665
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
935-1208 |
1.56e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 935 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD--------LTAELRECKMEIEDKKQE 1006
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqwkekrdeLNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1007 LLEMD-QALKERNWELKQRAAQVTHLDmTIREHRGEMEQKIIKLEGTLEKSELELK--------ECNKQIESLNDKLQNA 1077
Cdd:pfam12128 324 LEALEdQHGAFLDADIETAAADQEQLP-SWQSELENLEERLKALTGKHQDVTAKYNrrrskikeQNNRDIAGIKDKLAKI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1078 KEQL-REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELrltrEQVQNSHTELAEARH 1156
Cdd:pfam12128 403 REARdRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELL----LQLENFDERIERARE 478
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1803357890 1157 QQVQAQREIERLSSELEDMKQLSKEKDAHgnHLAEELGASKVREAHLEARMQ 1208
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEA--LRQASRRLEERQSALDELELQ 528
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
817-1292 |
1.70e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 817 LEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGE 896
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 897 NKAMH--LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQK 974
Cdd:COG4717 127 LLPLYqeLEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 975 AQLSLEEKYTTIKDLTAELREcKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--------- 1045
Cdd:COG4717 207 RLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1046 IIKLEGTLEKSELELKECNKQIESLN--DKLQNA--KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQ 1121
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPalEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1122 yiatqykeaIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMkqlskekdahgnhLAEELGASKVR-E 1200
Cdd:COG4717 366 ---------EELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ-------------LEELLGELEELlE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1201 AHLEARMQAEIKKLSAEVESLKEayHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE----------AQDT 1270
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEE--ELEELREELAELEAELEQLEEDGELAELLQELEELKAELRElaeewaalklALEL 501
|
490 500
....*....|....*....|....
gi 1803357890 1271 VSNLHQQVQDRN--EVIEAANEAL 1292
Cdd:COG4717 502 LEEAREEYREERlpPVLERASEYF 525
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
936-1285 |
1.88e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 936 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 1015
Cdd:pfam07888 42 ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1016 ERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR------------- 1082
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRslskefqelrnsl 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1083 -EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKE----QEQYIATQYKEAIdLGQELRLTREQVQNSHTELAEARHQ 1157
Cdd:pfam07888 202 aQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEElrslQERLNASERKVEG-LGEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1158 QVQAQREIERLSSEL-EDMKQLSKEKDAhgnhLAEELGASKVReahlearmqaeIKKLSAEVESLKEAYHMEMISHQENH 1236
Cdd:pfam07888 281 AAQLTLQLADASLALrEGRARWAQERET----LQQSAEADKDR-----------IEKLSAELQRLEERLQEERMEREKLE 345
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1803357890 1237 AKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVI 1285
Cdd:pfam07888 346 VELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
232-1070 |
2.04e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTnCEKENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLL-YLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 312 NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVE 391
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 392 LRSLEKIISQLPLKRELfgFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIK---LAIKEAEIQKLHANLTANQLS 468
Cdd:pfam02463 340 LEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKeeeLELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 469 QSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAH 548
Cdd:pfam02463 418 EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 549 RTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHE 628
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 629 KICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKK 708
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 709 DEALKALQNQVSEETIkvRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVI 788
Cdd:pfam02463 658 LAEKSEVKASLSELTK--ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 789 LQHTLQQQQQMLQQEtirngELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTAR 868
Cdd:pfam02463 736 EELKLLKQKIDEEEE-----EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEEL 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 869 QVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKEL--EKLQHSTETELTEALQKREV 946
Cdd:pfam02463 811 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELlqELLLKEEELEEQKLKDELES 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 947 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAA 1026
Cdd:pfam02463 891 KEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKE 970
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1803357890 1027 QVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL 1070
Cdd:pfam02463 971 ELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
751-1041 |
2.42e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.70 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 751 KEKFEKQLKKKSEEVyclqKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 830
Cdd:COG2433 349 KNKFERVEKKVPPDV----DRDEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 831 QRESSAEKLRKMEEKCESAAH-EADLKRqkvieltgtARQVKIEMDQYKEELSKMEKEIMHLKRDgenkamhLSQLDMIL 909
Cdd:COG2433 425 LEAEVEELEAELEEKDERIERlERELSE---------ARSEERREIRKDREISRLDREIERLERE-------LEEERERI 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 910 DqtktELEKKTNAVKELEKLQHSTETELT---EALQKREVLETE------------LQNAHGELKSTLRQLQEL--RDVL 972
Cdd:COG2433 489 E----ELKRKLERLKELWKLEHSGELVPVkvvEKFTKEAIRRLEeeyglkegdvvyLRDASGAGRSTAELLAEAgpRAVI 564
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 973 QKAQLSlEEKYTTIKDLT-AELRECKMEIEDK------KQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGE 1041
Cdd:COG2433 565 VPGELS-EAADEVLFEEGiPVLPAEDVTIQEVddlavvDEEELEAAIEDWEERAEERRREKKAEMLERLISEYRAE 639
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
909-1113 |
2.49e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 909 LDQTKTELEKKTNAVKELeKLQH---STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyTT 985
Cdd:COG3206 184 LPELRKELEEAEAALEEF-RQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE--LL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 986 IKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREhrgEMEQKIIKLEGTLEKSELELKECNK 1065
Cdd:COG3206 261 QSPVIQQLRA---QLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQA 334
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1803357890 1066 QIESLNDKLQNAKEQlrEKEFIMLQNEQEISQlkKEIERTQQRMKEME 1113
Cdd:COG3206 335 QLAQLEARLAELPEL--EAELRRLEREVEVAR--ELYESLLQRLEEAR 378
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
565-1113 |
2.92e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.74 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 565 SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIrsleTNINTEHEKICLAFEKAKKIHLEQ 644
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDY----NNLKSALNELSSLEDMKNRYESEI 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 645 hkemeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHH-----------LESLDRLLTESKGEMKK--ENMKKDEA 711
Cdd:PRK01156 259 -----KTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNyindyfkykndIENKKQILSNIDAEINKyhAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 712 LKALQNQVSEETIKvrqldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSeevyclQKELKIKNHSLQETSEQNVILQH 791
Cdd:PRK01156 334 LQKDYNDYIKKKSR-----------YDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 792 TLQQQQQMLQQETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEkcesaaheadLKRQKVIELTGT---AR 868
Cdd:PRK01156 397 LKIQEIDPDAIKKELN-EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEM----------LNGQSVCPVCGTtlgEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 869 QVKIEMDQYKEELSKMEKEIMHLKRDG---ENKAMHLSQLDMILDqtKTELEKKTNAVKELEKLQHS------TETELTE 939
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEVkdiDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADledikiKINELKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 940 ALQKREVLETELQNAH-GELKSTLRQLQELRDV-----LQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-------QE 1006
Cdd:PRK01156 544 KHDKYEEIKNRYKSLKlEDLDSKRTSWLNALAVislidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidksiRE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1007 LLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK 1084
Cdd:PRK01156 624 IENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLEST 703
|
570 580
....*....|....*....|....*....
gi 1803357890 1085 EFIMLQNEQEISQLKKEIERTQQRMKEME 1113
Cdd:PRK01156 704 IEILRTRINELSDRINDINETLESMKKIK 732
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
170-348 |
3.02e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 170 ILEEQIINLEAEVsaqDKVLREAENKLEQsqkmviEKEQSLQESKEECIKLKvdlleqtkqgkraerqrnealynaEELS 249
Cdd:PRK12704 28 IAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLR------------------------NEFE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 250 KAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLrimavknsEV 329
Cdd:PRK12704 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--------ER 146
|
170 180
....*....|....*....|..
gi 1803357890 330 MAQLT--ESRQSIL-KLESELE 348
Cdd:PRK12704 147 ISGLTaeEAKEILLeKVEEEAR 168
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
563-1223 |
4.97e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 4.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 563 KASNSSKLESEMTKKCSQLLTLEkqLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI--CLAFEKAKKI 640
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLC--TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQeeQLKKQQLLKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 641 HLEQHKEMEKQIERLEAQLEKKDQQFKEQEktmsmlqqdIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVS 720
Cdd:TIGR00618 265 LRARIEELRAQEAVLEETQERINRARKAAP---------LAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 721 EEtikvrqldSALEICKEELVLHLNQLEGNKEKFEKQLKKKseEVYCLQKELKIKNHSLQETSEqnvilqhTLQQQQQML 800
Cdd:TIGR00618 336 QQ--------SSIEEQRRLLQTLHSQEIHIRDAHEVATSIR--EISCQQHTLTQHIHTLQQQKT-------TLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 801 QQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK--IEMDQYK 878
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKerEQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 879 EELSKMEKEImhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHGEL 958
Cdd:TIGR00618 479 EQIHLQETRK---KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT----RRMQRGEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 959 KSTLRQLQELRDVLQKAQ---LSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHlDMTI 1035
Cdd:TIGR00618 552 TSERKQRASLKEQMQEIQqsfSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD-LQDV 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNA-KEQLREKEFIMLQNE-QEISQLKKEIERTQQRMKEME 1113
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKeLLASRQLALQKMQSEkEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1114 SVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMkqlskekdahgnhlAEEL 1193
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA--------------ALQT 776
|
650 660 670
....*....|....*....|....*....|
gi 1803357890 1194 GAskvREAHLEARMQAEIKKLSAEVESLKE 1223
Cdd:TIGR00618 777 GA---ELSHLAAEIQFFNRLREEDTHLLKT 803
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1036-1133 |
5.11e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1036 REHRGEMEQKIIKLEGTLEK-----SEL--ELKECNKQIESLNDKLQNAKEQLREKefimLQNEQEISQLKKEIERTQQR 1108
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERleaevEELeaELEEKDERIERLERELSEARSEERRE----IRKDREISRLDREIERLERE 480
|
90 100
....*....|....*....|....*
gi 1803357890 1109 MKEMESVMKEQEQYIAtQYKEAIDL 1133
Cdd:COG2433 481 LEEERERIEELKRKLE-RLKELWKL 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
710-1113 |
5.24e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 5.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 710 EALKALQNQVSEETIKVRQLdsaleickEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 789
Cdd:COG4717 71 KELKELEEELKEAEEKEEEY--------AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 790 QHTLQQQQQMLQQETIRngELEDTQTKLEKQVSKLEQEL----QKQRESSAEKLRKMEEKCESAaheadlkRQKVIELTG 865
Cdd:COG4717 143 ELPERLEELEERLEELR--ELEEELEELEAELAELQEELeellEQLSLATEEELQDLAEELEEL-------QQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 866 TARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDM------------------------------------IL 909
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlgllallflLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 910 DQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYtTIKDL 989
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE-LEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 990 TAELRECKMEIEDKKQELLEMDQalkernwELKQRAAQVTHLDMTIREHRGEMEQKIikLEGTLEKSELELKECNKQIES 1069
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAE-------EYQELKEELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEE 443
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1803357890 1070 LNDKLQNAKEQLREKEFIM--LQNEQEISQLKKEIERTQQRMKEME 1113
Cdd:COG4717 444 LEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELA 489
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1041-1193 |
5.56e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRM------KEMES 1114
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1115 VMKEqeqyIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE--------DMKQLSKEKDAHG 1186
Cdd:COG1579 94 LQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDeelaeleaELEELEAEREELA 169
|
....*..
gi 1803357890 1187 NHLAEEL 1193
Cdd:COG1579 170 AKIPPEL 176
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
147-937 |
5.66e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 147 ELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 227 QTK-QGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKL 305
Cdd:pfam02463 300 SELlKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 306 RQLKEENNNGKEKLRIMA------VKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLD 379
Cdd:pfam02463 380 KLESERLSSAAKLKEEELelkseeEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 380 LCQQEIESSRVELRSLEKIISQLPLKRELfgfksYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLH 459
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLEL-----LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 460 ANLTANQLSQSLITCND------SQESSKLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLI 533
Cdd:pfam02463 535 GVAVENYKVAISTAVIVevsataDEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 534 QIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYsSIAAKNAELEQELMEKN 613
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL-EIQELQEKAESELAKEE 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 614 EKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIE-RLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDR 692
Cdd:pfam02463 694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKiNEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 693 LLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKEL 772
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 773 KIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHE 852
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 853 ADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHS 932
Cdd:pfam02463 934 EEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIE 1013
|
....*
gi 1803357890 933 TETEL 937
Cdd:pfam02463 1014 ETCQR 1018
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
947-1119 |
5.82e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 947 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE--RNWELKQR 1024
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1025 AAQVTHLdmtiREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREkefimlqneqEISQLKKEIER 1104
Cdd:COG1579 95 QKEIESL----KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE----------ELAELEAELEE 160
|
170
....*....|....*
gi 1803357890 1105 TQQRMKEMESVMKEQ 1119
Cdd:COG1579 161 LEAEREELAAKIPPE 175
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
939-1143 |
6.12e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 6.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTtikDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYD---ELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1019 WELKQRAAQVTHLDMTIREHRGEME------------QKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEqlREKEF 1086
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE--IMDEF 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1803357890 1087 IMLQNEQ-----EISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQ 1143
Cdd:PHA02562 333 NEQSKKLlelknKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
586-1045 |
6.42e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 586 KQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTehekicLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQ 665
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE------LREELEKLEKLLQLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 666 FKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEElvlhLN 745
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 746 QLEGNKEKFEKQLkkkseEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQE---TIRNGELEDTQTKLEKQVS 822
Cdd:COG4717 224 ELEEELEQLENEL-----EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 823 KLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKiEMDQYKEELSKMEKEIMHLKRDGENKAMhl 902
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 903 sqLDMILDQTKTELEKKTNAVKELEKLQhsteteltealQKREVLETELQNAHGELKSTLRQLQ--ELRDVLQKAQLSLE 980
Cdd:COG4717 376 --LAEAGVEDEEELRAALEQAEEYQELK-----------EELEELEEQLEELLGELEELLEALDeeELEEELEELEEELE 442
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 981 EKYTTIKDLTAELRECKMEIE-----DKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045
Cdd:COG4717 443 ELEEELEELREELAELEAELEqleedGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
814-1027 |
7.80e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 7.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 814 QTKLEKQVSKLeQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 893
Cdd:COG3883 15 DPQIQAKQKEL-SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 894 DGENKAMHLSQLDMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVL 972
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1803357890 973 QKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQ 1027
Cdd:COG3883 174 EAQQ---AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
939-1180 |
8.82e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 8.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 939 EALQKREVLETELQNAHGELKSTLRQLqelrDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED-KKQELLEMDQAL-KE 1016
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLsTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1017 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQN---AKEQLREKEFIMLQNEQ 1093
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGgkvGGKALRPSQRVLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1094 -----EISQLKKEIERTQQrmkeMESVMKEQEQYIAtqykEAID-LGQELRLTREQVQNSHTELAEARHQQVQAQREIER 1167
Cdd:PRK11281 202 allnaQNDLQRKSLEGNTQ----LQDLLQKQRDYLT----ARIQrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAAR 273
|
250
....*....|....*....
gi 1803357890 1168 ------LSSELEDMKQLSK 1180
Cdd:PRK11281 274 iqanplVAQELEINLQLSQ 292
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1064-1225 |
9.01e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 9.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1064 NKQIESLNDKLQNAKEQL----REKEFIMLQNE-----QEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLG 1134
Cdd:COG3206 181 EEQLPELRKELEEAEAALeefrQKNGLVDLSEEaklllQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1135 Q--ELRLTREQVQNSHTELAEAR------HQQVQA-QREIERLSSELED-MKQLSKEKDAHGNHLAEELGASKVREAHLE 1204
Cdd:COG3206 261 QspVIQQLRAQLAELEAELAELSarytpnHPDVIAlRAQIAALRAQLQQeAQRILASLEAELEALQAREASLQAQLAQLE 340
|
170 180
....*....|....*....|....*..
gi 1803357890 1205 ARM------QAEIKKLSAEVESLKEAY 1225
Cdd:COG3206 341 ARLaelpelEAELRRLEREVEVARELY 367
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
967-1291 |
1.16e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 967 ELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKqELLEMDQALKERNWELKQRAAQVTHldmTIREHRGEMEQKI 1046
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLR---EINEISSELPELR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1047 IKLEGtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtq 1126
Cdd:PRK03918 221 EELEK-LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-- 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1127 ykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDahgnHLAEELGASKVREAHLEar 1206
Cdd:PRK03918 298 ------LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK----ELEKRLEELEERHELYE-- 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1207 mqaEIKKLSAEVESLKeayhmemishqenhakwKISADSQKSSVQQLNEQLEKAKLELEEAQDTV----SNLHQQVQDRN 1282
Cdd:PRK03918 366 ---EAKAKKEELERLK-----------------KRLTGLTPEKLEKELEELEKAKEEIEEEISKItariGELKKEIKELK 425
|
....*....
gi 1803357890 1283 EVIEAANEA 1291
Cdd:PRK03918 426 KAIEELKKA 434
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
807-1152 |
1.22e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 807 NGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEK 886
Cdd:pfam12128 631 NGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 887 EimHLKRDGENKAMHLSQLDMILDQTKTELEK-KTNAVKELEKLQHSTETELtEALQKREVLETELQNAHGELKSTLRQL 965
Cdd:pfam12128 711 E--ARTEKQAYWQVVEGALDAQLALLKAAIAArRSGAKAELKALETWYKRDL-ASLGVDPDVIAKLKREIRTLERKIERI 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 966 QELRDVLQKAQLSLEEKYTTIKD-LTAELRECKMEIEDKKQELLEMDQALKERNWEL-KQRAA---QVTHLDMTIREHRG 1040
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQQQLARLIADTKLRRAKLeMERKAsekQQVRLSENLRGLRC 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1041 EMEQ-KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLreKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:pfam12128 868 EMSKlATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV--KKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDK 945
|
330 340 350
....*....|....*....|....*....|...
gi 1803357890 1120 EQYIATQYKEAIDLGQELRLTREQVQNSHTELA 1152
Cdd:pfam12128 946 GIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQV 978
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
499-1011 |
2.21e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 499 AESVKDQNQHTMNKQYEKERQRLVTGIEELRTKL--IQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTK 576
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAdaAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 577 KCSQllTLEKQLEEKIVAYSsiAAKNAEleqELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLE 656
Cdd:PTZ00121 1378 KKAD--AAKKKAEEKKKADE--AKKKAE---EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 657 AQLEKKDQQFKEQEKTMSMLQQDIICKQHHLEsldRLLTESKGEMKKENMKKDEALKALQ-NQVSEETIKVRQLDSALEI 735
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA---KKADEAKKKAEEAKKKADEAKKAAEaKKKADEAKKAEEAKKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 736 CKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQT 815
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 816 KLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEadlKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDG 895
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE---EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 896 ENKAMHLSQLdmildQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 975
Cdd:PTZ00121 1685 EDEKKAAEAL-----KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
490 500 510
....*....|....*....|....*....|....*.
gi 1803357890 976 QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 1011
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
829-1153 |
2.64e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 829 QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEmdqyKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 908
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMD----RQAAIYAEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 909 LDQTKT-ELEKKTNAVKELEKLQhstetelTEALQKREVLETELQNAhgelkstlrqlqelrdvlQKAQLSLEEKYTTIK 987
Cdd:pfam17380 362 LERIRQeEIAMEISRMRELERLQ-------MERQQKNERVRQELEAA------------------RKVKILEEERQRKIQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 988 DLTAELRECKMEIEDKKQELLEMDQALKERNWE-LKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQ 1066
Cdd:pfam17380 417 QQKVEMEQIRAEQEEARQREVRRLEEERAREMErVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1067 IESLNDKLQNA------KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY-IATQYKEAIDLGQELRL 1139
Cdd:pfam17380 497 LEKELEERKQAmieeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMrKATEERSRLEAMERERE 576
|
330
....*....|....
gi 1803357890 1140 TREQVQNSHTELAE 1153
Cdd:pfam17380 577 MMRQIVESEKARAE 590
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
809-1195 |
3.16e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 809 ELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLkrQKVIELTGTaRQVkiemdQYKEELSKMEKE 887
Cdd:COG3096 355 DLEELTERLEEQEEVVE-EAAEQLAEAEARLEAAEEEVDSLKSQlADY--QQALDVQQT-RAI-----QYQQAVQALEKA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 888 imhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTE--TELTEALQ--KREVLETELQNAHGELKSTL 962
Cdd:COG3096 426 ----RALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEqKLSVADAarRQFEKAYElvCKIAGEVERSQAWQTARELL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 963 RQLQELRDVLQKAQlSLEEKYttikdltAELREcKMEIEDKKQELLEmdqalkernwELKQRAAQVTHLDMTIREHRGEM 1042
Cdd:COG3096 502 RRYRSQQALAQRLQ-QLRAQL-------AELEQ-RLRQQQNAERLLE----------EFCQRIGQQLDAAEELEELLAEL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1043 EQkiiklegtlekselelkecnkQIESLNDKLQNAKEQLrekefimlqneqeiSQLKKEIERTQQRMKEMES------VM 1116
Cdd:COG3096 563 EA---------------------QLEELEEQAAEAVEQR--------------SELRQQLEQLRARIKELAArapawlAA 607
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 1117 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARhQQVQAQREieRLSSELEDMKQLSKEKDAHGNHLAEELGA 1195
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVER-DELAARKQ--ALESQIERLSQPGGAEDPRLLALAERLGG 683
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-420 |
4.15e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 180 AEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKV 259
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 260 AEKLEKVQAEEEILERNLTNCEKENK--------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVK 325
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 326 NSEVMAQLTESRQSILKLESELENKDEILrdkfslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLK 405
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLL----------ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|....*
gi 1803357890 406 RELFGFKSYLSKYQM 420
Cdd:COG4942 243 TPAAGFAALKGKLPW 257
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
599-836 |
5.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 599 AAKNAELEQELMEKNEKIRSLETNINTEhekiclafEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQ 678
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 679 DIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICK---EELVLHLNQLEGNKEKFE 755
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 756 KQLKKKSEevycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETirnGELEDTQTKLEKQVSKLEQELQKQRESS 835
Cdd:COG4942 171 AERAELEA----LLAELEEERAALEALKAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 1803357890 836 A 836
Cdd:COG4942 244 P 244
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1101-1305 |
7.00e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1101 EIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSK 1180
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1181 EKDAHGNHLAEELGASKVREA--------HLEARMQAEIKKLSAEVESLKEAyhmemishqenhakwKISADSQKSSVQQ 1252
Cdd:COG3883 97 RSGGSVSYLDVLLGSESFSDFldrlsalsKIADADADLLEELKADKAELEAK---------------KAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1803357890 1253 LNEQLEKAKLELE----EAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAK 1305
Cdd:COG3883 162 LKAELEAAKAELEaqqaEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
808-1108 |
7.15e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 808 GELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLKR------------QKVIELTGTARQVKIEM 874
Cdd:PRK04863 355 ADLEELEERLEEQNEVVE-EADEQQEENEARAEAAEEEVDELKSQlADYQQaldvqqtraiqyQQAVQALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 875 D-------QYKEELSKMEKEIMHLKRDGENKamhLSQLDMILDQTKTELEKKTNAVKELEKLQ-HSTETELTEALQKREV 946
Cdd:PRK04863 434 DltadnaeDWLEEFQAKEQEATEELLSLEQK---LSVAQAAHSQFEQAYQLVRKIAGEVSRSEaWDVARELLRRLREQRH 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 947 LETELQ---NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQ 1023
Cdd:PRK04863 511 LAEQLQqlrMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1024 RAAQVTHLDMTirehrgemEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1103
Cdd:PRK04863 591 LQARIQRLAAR--------APAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662
|
....*
gi 1803357890 1104 RTQQR 1108
Cdd:PRK04863 663 RLSQP 667
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1041-1166 |
7.59e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqnEQEISQLKKEIERTQQRMKEMesvmkEQE 1120
Cdd:PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA------QQAIKEAKKEADEIIKELRQL-----QKG 599
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1803357890 1121 QYIATQYKEAIDlgqelrlTREQVQNSHTELAEARHQQVQAQREIE 1166
Cdd:PRK00409 600 GYASVKAHELIE-------ARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
988-1304 |
7.65e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 988 DLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQvthldmtIREHRGEMeQKIIKLEGTLEKSELELKECN 1064
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARelaELNEAESDLEQDYQA-------ASDHLNLV-QTALRQQEKIERYQADLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1065 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQV 1144
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1145 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKK 1213
Cdd:PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1214 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQQVQD 1280
Cdd:PRK04863 511 LAEQLQQLRMRLSeLEQRLRQQQRAERLLAEFCKRLGKNlddedeleqlqeELEARLESLSESVSEARERRMALRQQLEQ 590
|
330 340
....*....|....*....|....*..
gi 1803357890 1281 RNEVI---EAANEALLTKESELTRLQA 1304
Cdd:PRK04863 591 LQARIqrlAARAPAWLAAQDALARLRE 617
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
832-1186 |
9.85e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 9.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 832 RESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQ-------VKIEMDQyKEELSKMEKEIMHLKRdgenkamHLSQ 904
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRfigshlaVAFEADP-EAELRQLNRRRVELER-------ALAD 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 905 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKR-EVLETELQNAHgELKSTLRQlqelrdvlQKAQLSLEEKy 983
Cdd:PRK04863 856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRvEEIREQLDEAE-EAKRFVQQ--------HGNALAQLEP- 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 984 ttikdLTAELRECKMEIEDKKQELLEMDQALKErnweLKQRAAQVTHLdMTIREHRG-EMEQKIikLEGTLEKSELeLKE 1062
Cdd:PRK04863 926 -----IVSVLQSDPEQFEQLKQDYQQAQQTQRD----AKQQAFALTEV-VQRRAHFSyEDAAEM--LAKNSDLNEK-LRQ 992
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1063 CNKQIESLNDKlqnAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEaiDLGQELRLTRE 1142
Cdd:PRK04863 993 RLEQAEQERTR---AREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD----LGVPADS--GAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1803357890 1143 QVqnsHTELAEARHQQVQAQREIERLSSELEDM-KQLSK-EKDAHG 1186
Cdd:PRK04863 1064 EL---HARLSANRSRRNQLEKQLTFCEAEMDNLtKKLRKlERDYHE 1106
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
482-691 |
1.01e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 482 KLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELL 561
Cdd:PLN02939 171 KINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 562 EKASNSSKLeSEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQE-LMEKNEKIRSLETNINTEHEKICLAfekakki 640
Cdd:PLN02939 251 EVAETEERV-FKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDcWWEKVENLQDLLDRATNQVEKAALV------- 322
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1803357890 641 hLEQHKEMEKQIERLEAQLEKKDqQFKEQEKTMSMLQQDIICKQHHLESLD 691
Cdd:PLN02939 323 -LDQNQDLRDKVDKLEASLKEAN-VSKFSSYKVELLQQKLKLLEERLQASD 371
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
973-1144 |
1.04e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 973 QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGT 1052
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED-----------LEKEIKRLELEIEEVEAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1053 LEKSELELKEC--NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEA 1130
Cdd:COG1579 75 IKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170
....*....|....
gi 1803357890 1131 IDLGQELRLTREQV 1144
Cdd:COG1579 155 EAELEELEAEREEL 168
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
988-1304 |
1.17e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 988 DLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTI---REHRGEMeQKIIKLEGTLEKSELELKECN 1064
Cdd:COG3096 285 ERALELRR---ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYqaaSDHLNLV-QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1065 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEmesvmkeqEQYIATQYKEAIdlgQELRLTREQV 1144
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDV--------QQTRAIQYQQAV---QALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1145 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVRE-AHLEARMQ----AEIKK 1213
Cdd:COG3096 430 GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQkLSVADAARRQFekayeLVCKIAGEVERSqAWQTARELlrryRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1214 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQ---Q 1277
Cdd:COG3096 510 LAQRLQQLRAQLAeLEQRLRQQQNAERLLEEFCQRIGQQldaaeeleellaELEAQLEELEEQAAEAVEQRSELRQqleQ 589
|
330 340
....*....|....*....|....*..
gi 1803357890 1278 VQDRNEVIEAANEALLTKESELTRLQA 1304
Cdd:COG3096 590 LRARIKELAARAPAWLAAQDALERLRE 616
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
187-784 |
1.26e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 187 KVLREAENKLEQsqkmvIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALynAEELSKAFQQYK--KKVAEKLE 264
Cdd:PRK03918 169 EVIKEIKRRIER-----LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL--REELEKLEKEVKelEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 265 KVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRImavknSEVMAQLTESRQSILKLE 344
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL-----SEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 345 SELENKDEILRDKfslMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIisqLPLKRELFGFKSYLSKYQMSSFS 424
Cdd:PRK03918 317 SRLEEEINGIEER---IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA---KAKKEELERLKKRLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 425 NKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQ-------LSQSLITCNDSQESSKLSSLETEPVKLGGHQ 497
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 498 VAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVnmahrtsqfqliqEELLEKASNSSKLESEMTKK 577
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL-------------EELEKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 578 CSQLLTLEKQLEEKIVAYSSIAA---KNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQhKEMEKQIER 654
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAElekKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL-KDAEKELER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 655 LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGE-MKKENMKKDEALKALQNQVSEETIKVRQLDSAL 733
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEeLREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 734 EICKEElvlhLNQLEGNKEKFEKqLKKKSEEVYCLQKELK-----IKNHSLQETSE 784
Cdd:PRK03918 697 EKLKEE----LEEREKAKKELEK-LEKALERVEELREKVKkykalLKERALSKVGE 747
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
443-979 |
1.30e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 43.20 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 443 ELRIKLAIKEAEIQKLHANLTANQLSQSlitcndSQESSKLSSLETEPVKLGGHQVAESVKDQnqhtmnkQYEKERQRLV 522
Cdd:pfam07111 182 ETKRAGEAKQLAEAQKEAELLRKQLSKT------QEELEAQVTLVESLRKYVGEQVPPEVHSQ-------TWELERQELL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 523 TGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLtleKQLEEKIVAYSsiaakn 602
Cdd:pfam07111 249 DTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLL---NRWREKVFALM------ 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 603 AELEQELMEKNEKIRSLETNINTEHEKI-CLAFEKAKKIHLEQHKEMEKQIERLEAQleKKDQQFKEQEKTMSMLQQDII 681
Cdd:pfam07111 320 VQLKAQDLEHRDSVKQLRGQVAELQEQVtSQSQEQAILQRALQDKAAEVEVERMSAK--GLQMELSRAQEARRRQQQQTA 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 682 CKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLhlnqlegnkEKFEKQLKKK 761
Cdd:pfam07111 398 SAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL---------AQLRQESCPP 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 762 SEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQtkLEKQVSKLEQELQKQRESSA---EK 838
Cdd:pfam07111 469 PPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQ--LSEVAQQLEQELQRAQESLAsvgQQ 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 839 LRKMEEKCESAAHEADLKRQKVI---ELTGTARQVKIE--MDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildQTK 913
Cdd:pfam07111 547 LEVARQGQQESTEEAASLRQELTqqqEIYGQALQEKVAevETRLREQLSDTKRRLNEARREQAKAVVSLRQI-----QHR 621
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 914 TELEKKTNavKELEKLQHSTETELTEALQKRevlETELQNAHGELKSTLRQLQELRDVLQKAQLSL 979
Cdd:pfam07111 622 ATQEKERN--QELRRLQDEARKEEGQRLARR---VQELERDKNLMLATLQQEGLLSRYKQQRLLAV 682
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
809-1081 |
1.32e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 809 ELEDTQTK---LEKQVSKLEQELQKQREssaeKLRKMEEKC---------------ESAAHEADLKRQKVIEltgtARQV 870
Cdd:PRK04863 838 ELRQLNRRrveLERALADHESQEQQQRS----QLEQAKEGLsalnrllprlnlladETLADRVEEIREQLDE----AEEA 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 871 KIEMDQYKEELSKMEKEIMHLKRDGENKAmHLSQLDMILDQTKTELEKKTNAVKELEKLQH-----------STETELTE 939
Cdd:PRK04863 910 KRFVQQHGNALAQLEPIVSVLQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaemlAKNSDLNE 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 940 ALQKR-EVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDkkqellEMDQALKERN 1018
Cdd:PRK04863 989 KLRQRlEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS------GAEERARARR 1062
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 1019 WELKQRaaqvthldmtIREHRGEMEQkiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQL 1081
Cdd:PRK04863 1063 DELHAR----------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
438-1299 |
1.42e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 438 KLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPvklgghqvaesvkdQNQHTMNKQYEKE 517
Cdd:pfam01576 228 QAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDL--------------ESERAARNKAEKQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 518 RQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLL-TLEKQLEEKIVAYS 596
Cdd:pfam01576 294 RRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALeELTEQLEQAKRNKA 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 597 SIAAKNAELEQELMEKNEKIRSLETnintehekiclafekakkihleQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSML 676
Cdd:pfam01576 374 NLEKAKQALESENAELQAELRTLQQ----------------------AKQDSEHKRKKLEGQLQELQARLSESERQRAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 677 QQDIICKQHHLESLDRLLTESKGE---MKKENMKKDEALKALQNQVSEETIKVRQLDS---ALEICKEELVLHLNQLEGN 750
Cdd:pfam01576 432 AEKLSKLQSELESVSSLLNEAEGKnikLSKDVSSLESQLQDTQELLQEETRQKLNLSTrlrQLEDERNSLQEQLEEEEEA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 751 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 830
Cdd:pfam01576 512 KRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDH 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 831 QRE--SSAEKLRKMEEKCESAAHEADLKRQKvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 908
Cdd:pfam01576 592 QRQlvSNLEKKQKKFDQMLAEEKAISARYAE-------------ERDRAEAEAREKETRALSLARALEEALEAKEELERT 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 909 LDQTKTELEKKTNA-------VKELEKLQHSTETELTEALQKREVLETELQ---NAHGELKSTLRQL--QELRDVLQKAQ 976
Cdd:pfam01576 659 NKQLRAEMEDLVSSkddvgknVHELERSKRALEQQVEEMKTQLEELEDELQateDAKLRLEVNMQALkaQFERDLQARDE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 977 LSLEEKyttiKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVThldmTIREHRGEMEQKIIKLEGTLEKS 1056
Cdd:pfam01576 739 QGEEKR----RQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQID----AANKGREEAVKQLKKLQAQMKDL 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1057 ELEL--------------KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIER-------TQQRMKEMESV 1115
Cdd:pfam01576 811 QRELeearasrdeilaqsKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASgasgksaLQDEKRRLEAR 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1116 MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR-------HQQVQAQREIERLSSELEDMKQLSKEKDAHGNH 1188
Cdd:pfam01576 891 IAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERstsqkseSARQQLERQNKELKAKLQEMEGTVKSKFKSSIA 970
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1189 LAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQ 1268
Cdd:pfam01576 971 ALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRAN 1050
|
890 900 910
....*....|....*....|....*....|.
gi 1803357890 1269 DTVSNLHQQVQDRNEVIEAANEALLTKESEL 1299
Cdd:pfam01576 1051 AARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
969-1192 |
1.47e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 969 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQaLKERNWELKQRAAQVT-HLDMTIREHRGEMEQKII 1047
Cdd:COG5022 853 RSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISS-LKLVNLELESEIIELKkSLSSDLIENLEFKTELIA 931
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1048 KLEGTLEKSELEL-----KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqeqy 1122
Cdd:COG5022 932 RLKKLLNNIDLEEgpsieYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL---------- 1001
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1123 iatqykeaidlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEE 1192
Cdd:COG5022 1002 ------------AELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLEN 1059
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
172-396 |
1.52e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 172 EEQIINLEAEVSAQDKVLREAENKLEQSQKMVieKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALY-NAEELSK 250
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAEDLV--EAEDRIERLEERREDLEELIAERRETIEEKRERAEELReRAAELEA 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 251 AFQQYKKKVAEKLEKVQAEEEI---LERNLTNCEKENKRL------QERCGLYKSELEILKEKLRQLKEENNNGKEKLRI 321
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAREEvaeLNSKLAELKERIESLerirtlLAAIADAEDEIERLREKREALAELNDERRERLAE 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 322 MAVKNSEVMAQLTESRQSILK-----LESELENKDEILRDkfsLMNENRELKVRVAAQNERLDlcqqEIESSRVELRSLE 396
Cdd:PRK02224 632 KRERKRELEAEFDEARIEEARedkerAEEYLEQVEEKLDE---LREERDDLQAEIGAVENELE----ELEELRERREALE 704
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
778-1177 |
1.71e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 778 SLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQREssaeKLRKMEEKCESAAHEADlkr 857
Cdd:pfam07888 39 CLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSRE----KHEELEEKYKELSASSE--- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 858 qkvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMildQTKTELEKKTNAVKELEKLQHSTETEl 937
Cdd:pfam07888 112 ---------------ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVL---ERETELERMKERAKKAGAQRKEEEAE- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 938 tealqkREVLETELQNAHGELKSTLRQLQELRDvlqkaqlSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKER 1017
Cdd:pfam07888 173 ------RKQLQAKLQQTEEELRSLSKEFQELRN-------SLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1018 NwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQeisQ 1097
Cdd:pfam07888 240 R-SLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAE---A 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1098 LKKEIERTQQRMKEMESVMKEQEqyiATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1177
Cdd:pfam07888 316 DKDRIEKLSAELQRLEERLQEER---MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
497-680 |
1.74e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 497 QVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKV--NMAHRTSQFQLIQEELLEKASNSSKLESEM 574
Cdd:COG3206 156 ALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 575 TKKCSQLLTLEKQLEEKIVA---------YSSIAAKNAELEQELMEK--------------NEKIRSLETNINTEHEKIC 631
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDAlpellqspvIQQLRAQLAELEAELAELsarytpnhpdvialRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1803357890 632 LAFEKAKKIHLEQHKEMEKQIERLEAQLekkdQQFKEQEKTMSMLQQDI 680
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARL----AELPELEAELRRLEREV 360
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
810-1200 |
1.93e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 810 LEDTQTKLEKQV---SKLEQEL----------------QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:PRK04863 309 LVEMARELAELNeaeSDLEQDYqaasdhlnlvqtalrqQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 871 KIEMDQYKEELSKMEKEIMHLKRdgenKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 950
Cdd:PRK04863 389 EEEVDELKSQLADYQQALDVQQT----RAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 951 LQNAhgelKSTLRQLQELRDVLQKA--QLSLEEKYTTIKDLTAELRECKMEIEDKKQelLEMDQALKERNWELKQRAAQV 1028
Cdd:PRK04863 465 LSVA----QAAHSQFEQAYQLVRKIagEVSRSEAWDVARELLRRLREQRHLAEQLQQ--LRMRLSELEQRLRQQQRAERL 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1029 thldmtirehRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKeieRTQQR 1108
Cdd:PRK04863 539 ----------LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA---RAPAW 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1109 MKEMESVMKEQEQYIATQyKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSseledmkQLSKEKDAHGNH 1188
Cdd:PRK04863 606 LAAQDALARLREQSGEEF-EDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS-------QPGGSEDPRLNA 677
|
410
....*....|..
gi 1803357890 1189 LAEELGASKVRE 1200
Cdd:PRK04863 678 LAERFGGVLLSE 689
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
988-1311 |
2.02e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 988 DLTAELRECKMEIEDKK---------QELLE--------------------MDQALKERNwEL-----KQRAAQVTHLDM 1033
Cdd:PRK04863 234 DMEAALRENRMTLEAIRvtqsdrdlfKHLITestnyvaadymrhanerrvhLEEALELRR-ELytsrrQLAAEQYRLVEM 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1034 -----TIREHRGEMEQKI-------------IKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEI 1095
Cdd:PRK04863 313 arelaELNEAESDLEQDYqaasdhlnlvqtaLRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1096 SQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1175
Cdd:PRK04863 393 DELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1176 KQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKKLSAEVESLKEAYH-MEMISHQENHAKwKISA 1243
Cdd:PRK04863 462 EQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRHLAEQLQQLRMRLSeLEQRLRQQQRAE-RLLA 540
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1803357890 1244 DSQKSSVQQLNEQlekaklelEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:PRK04863 541 EFCKRLGKNLDDE--------DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1064-1182 |
2.10e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1064 NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDlgQELRLTREQ 1143
Cdd:PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD--EIIKELRQL 596
|
90 100 110
....*....|....*....|....*....|....*....
gi 1803357890 1144 VQNSHTELAEarHQQVQAQREIERLSSELEDMKQLSKEK 1182
Cdd:PRK00409 597 QKGGYASVKA--HELIEARKRLNKANEKKEKKKKKQKEK 633
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-355 |
2.11e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 161 AQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNE 240
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 241 ALYNAEELSKAFQQYKKKvAEKLEKVQAEEEILERNLTNCEKENKRLQErcgLYKSELEILK--EKLRQLKEENNNGKEK 318
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKK-AEEAKKAEEDEKKAAEALKKEAEEAKKAEE---LKKKEAEEKKkaEELKKAEEENKIKAEE 1734
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1803357890 319 LRIMA---VKNSEVMAQLTESRQSILKLESELENKDEILR 355
Cdd:PTZ00121 1735 AKKEAeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
806-1016 |
2.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 806 RNGELEDTQTKLEKQVSKLEQELQkQRESSAEKLRKmEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKME 885
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELE-EAEAALEEFRQ-KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 886 KEImhlkRDGENKAMHLSQlDMILDQTKTELEKKTNAVKELEKL---QHSTETELTEALQK-REVLETELQNAHGELKST 961
Cdd:COG3206 247 AQL----GSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAAlRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1803357890 962 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 1016
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
232-380 |
2.57e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNltncekENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE------ELQREEERLVQKEEQLDARAEKLDNLENQ 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1803357890 312 NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESElENKDEILRDKFSLMNEnrELKVRVAAQNERLDL 380
Cdd:PRK12705 107 LEEREKALSARELELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEE--EKAQRVKKIEEEADL 172
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
958-1191 |
2.58e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 958 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ----ELLEMDQALKErnwELKQRAAQVTHLDM 1033
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQnkydELVEEAKTIKA---EIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1034 TIR---EHRGEMEQKIIKLEGTLEKSELELK---------ECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKE 1101
Cdd:PHA02562 249 DIEdpsAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRITKIKDKLKELQ-------HSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1102 IERTQQRMKEmesvmkeqeqyIATQYKEAIDLGQELRLTREQVQNShtelaeaRHQQVQAQREIERLSSEL----EDMKQ 1177
Cdd:PHA02562 322 IDELEEIMDE-----------FNEQSKKLLELKNKISTNKQSLITL-------VDKAKKVKAAIEELQAEFvdnaEELAK 383
|
250
....*....|....
gi 1803357890 1178 LSKEKDAHGNHLAE 1191
Cdd:PHA02562 384 LQDELDKIVKTKSE 397
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
867-1017 |
2.91e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 867 ARqVKIEMDQYKEELSKMEKEIMHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTEtELTEALQKREV 946
Cdd:COG0542 400 AR-VRMEIDSKPEELDELERRLEQLEIE---------KEALKKEQDEASFERLAELRDELAELEEELE-ALKARWEAEKE 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 947 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK-DLTAElreckmEI----------------EDKKQELLE 1009
Cdd:COG0542 469 LIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLReEVTEE------DIaevvsrwtgipvgkllEGEREKLLN 542
|
....*...
gi 1803357890 1010 MDQALKER 1017
Cdd:COG0542 543 LEEELHER 550
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
768-982 |
2.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 768 LQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCE 847
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 848 SAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENkamhlsqldmiLDQTKTELEKKTNAVKELE 927
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1803357890 928 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 982
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
222-1230 |
3.03e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 222 VDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERcglyKSELEIL 301
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR----LKEIEHN 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 302 KEKLRQLKEENNNGKEKLRIMAVKNSEVMaqltesrqsiLKLESELENKDEILRDkfslMNENRELKVRvaAQNERLDLC 381
Cdd:TIGR00606 261 LSKIMKLDNEIKALKSRKKQMEKDNSELE----------LKMEKVFQGTDEQLND----LYHNHQRTVR--EKERELVDC 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 382 QQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKL---VISELRIKLAIKEAEIQKL 458
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFergPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 459 HANLTANQLsqslitCNDSQEssklssletepvklgghqvaesvkdqNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAE 538
Cdd:TIGR00606 405 DEAKTAAQL------CADLQS--------------------------KERLKQEQADEIRDEKKGLGRTIELKKEILEKK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 539 NSDLKvNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKivaysSIAAKNAELEQELMEKNEKIRS 618
Cdd:TIGR00606 453 QEELK-FVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK-----SLQNEKADLDRKLRKLDQEMEQ 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 619 LETNINTEHEKICLAFEKAKKihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLteSK 698
Cdd:TIGR00606 527 LNHHTTTRTQMEMLTKDKMDK--DEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL--AS 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 699 GEMKKENMKKDEALKALQNQVSEETIkvrqldsaLEICKEElvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHS 778
Cdd:TIGR00606 603 LEQNKNHINNELESKEEQLSSYEDKL--------FDVCGSQ------DEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 779 LQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQ 858
Cdd:TIGR00606 669 ITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR----QSIIDLKEK 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 859 KVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDmILDQTKTELEKKTNAVKELEKLQHSTETELT 938
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT-IMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 939 EALQKREVLETelQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:TIGR00606 824 VQQVNQEKQEK--QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1019 WELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE-KEFIMLQNEQEISQ 1097
Cdd:TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNT 981
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1098 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQElrLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKq 1177
Cdd:TIGR00606 982 VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDN--LTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQK- 1058
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|...
gi 1803357890 1178 LSKEKDAHGNHLAEELGASKVREahlEARMQAEIKKLSAEVESLKEAYHMEMI 1230
Cdd:TIGR00606 1059 LEENIDLIKRNHVLALGRQKGYE---KEIKHFKKELREPQFRDAEEKYREMMI 1108
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
574-723 |
3.49e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 574 MTKKCSQLLTLEKQLEEKIVAYSSIAAKNA--ELEQELMEKNEKIRSletnintehekiclAFEKAKKIHLEQHKEMEKQ 651
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIkkEALLEAKEEIHKLRN--------------EFEKELRERRNELQKLEKR 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1803357890 652 IERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKE-----NMKKDEALKALQNQVSEET 723
Cdd:PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQElerisGLTAEEAKEILLEKVEEEA 167
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
648-1008 |
4.40e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 648 MEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTEskgemkkenmkKDEALKALQNQVSEETIKVR 727
Cdd:pfam10174 399 LQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSE-----------KERIIERLKEQREREDRERL 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 728 qldsaleickEELvlhlnqlegnkEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRN 807
Cdd:pfam10174 468 ----------EEL-----------ESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAV 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 808 GELEDTQTKLEKQVSKLEQ--ELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKME 885
Cdd:pfam10174 527 EQKKEECSKLENQLKKAHNaeEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELE 606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 886 KEIMHLKRDGENKAMHLsqldmildQTKTELEKKTNAvkELEKLQHSTETELTEALQKREVLETelqnaHGELKSTLRQL 965
Cdd:pfam10174 607 SLTLRQMKEQNKKVANI--------KHGQQEMKKKGA--QLLEEARRREDNLADNSQQLQLEEL-----MGALEKTRQEL 671
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1803357890 966 QELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELL 1008
Cdd:pfam10174 672 DATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
582-1088 |
4.60e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 582 LTLEKQLEEKIVAYSSIAAKNAELEQ--ELMEKNEKIRS---LETNINTEHEKICLAFEKAKKIHLEQHKEmEKQIERLE 656
Cdd:TIGR01612 1226 LFLEKIDEEKKKSEHMIKAMEAYIEDldEIKEKSPEIENemgIEMDIKAEMETFNISHDDDKDHHIISKKH-DENISDIR 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 657 AQLEKKDQQFKEQEKTMSM---LQQDIICKQHHLESLDRLLTESKGEMkkeNMKKDEALKALQNQVSEETIKVRQLDSAL 733
Cdd:TIGR01612 1305 EKSLKIIEDFSEESDINDIkkeLQKNLLDAQKHNSDINLYLNEIANIY---NILKLNKIKKIIDEVKEYTKEIEENNKNI 1381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 734 --EICKEELVLHL----NQLEGNKEKFEKQLKKKSEEvYCLQKELKIKNHSLQEtsEQNVILQHTLQQQQQMLQQETIRN 807
Cdd:TIGR01612 1382 kdELDKSEKLIKKikddINLEECKSKIESTLDDKDID-ECIKKIKELKNHILSE--ESNIDTYFKNADENNENVLLLFKN 1458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 808 GELEDTQTKLEKQVSKleQELQKQRESSAEKLRKMEEKCESAAHEADlKRQKVIEltgtarQVKIEMDQYKEELS----- 882
Cdd:TIGR01612 1459 IEMADNKSQHILKIKK--DNATNDHDFNINELKEHIDKSKGCKDEAD-KNAKAIE------KNKELFEQYKKDVTellnk 1529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 883 ----KMEKEIMHLKRDGENKAMHLSQLDmilDQTKTELEKKTNAVKELEKLQHSTETE--------------------LT 938
Cdd:TIGR01612 1530 ysalAIKNKFAKTKKDSEIIIKEIKDAH---KKFILEAEKSEQKIKEIKKEKFRIEDDaakndksnkaaidiqlslenFE 1606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE-EKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKER 1017
Cdd:TIGR01612 1607 NKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENgDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKI 1686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1018 NWELKQRAAQ-----VTHLDMTIREHRGEMEQKIIKLEGTLEK-------SELELKECNKQIESLNDKLQNAKEQLREKE 1085
Cdd:TIGR01612 1687 EIDVDQHKKNyeigiIEKIKEIAIANKEEIESIKELIEPTIENlissfntNDLEGIDPNEKLEEYNTEIGDIYEEFIELY 1766
|
...
gi 1803357890 1086 FIM 1088
Cdd:TIGR01612 1767 NII 1769
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
85-280 |
4.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 85 CKISGSSTDFQKKPRDKMFSSS----------APVDQEIKSLREKLNKLRQQNACL------VTQNHSLMTKFESIHFEL 148
Cdd:COG4913 581 GQVKGNGTRHEKDDRRRIRSRYvlgfdnraklAALEAELAELEEELAEAEERLEALeaeldaLQERREALQRLAEYSWDE 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 149 TQSRAKVSMLESAQQQ----AASVPILEEqiinLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDL 224
Cdd:COG4913 661 IDVASAEREIAELEAElerlDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 225 LEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNC 280
Cdd:COG4913 737 EAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
880-1029 |
5.85e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 880 ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHG--E 957
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1803357890 958 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVT 1029
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
902-1289 |
6.05e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.97 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 902 LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQK-REVLETELQNAH-------------GELKSTLRQLQE 967
Cdd:PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLyRELRKSLLANRFsfgpaldelekqlENLEEEFSQFVE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 968 L---------RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvTHLDMTIREH 1038
Cdd:PRK04778 187 LtesgdyveaREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDH-----LDIEKEIQDL 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1039 RGEMEQKIIKLEgtleksELELKECNKQIESLNDKLQNAKEQLrEKEFIMlqneqeisqlKKEIERTQQRMKEMESVMKE 1118
Cdd:PRK04778 262 KEQIDENLALLE------ELDLDEAEEKNEEIQERIDQLYDIL-EREVKA----------RKYVEKNSDTLPDFLEHAKE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1119 QEQyiatqykeaiDLGQELRLTREQVQNSHTELAEARhqqvQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASkv 1198
Cdd:PRK04778 325 QNK----------ELKEEIDRVKQSYTLNESELESVR----QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI-- 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1199 rEAHLEArMQAEIKKLSAEVESLKEAyhmEMISHQE-NHAKWKISADSQK---------------------SSVQQLNEQ 1256
Cdd:PRK04778 389 -LKQLEE-IEKEQEKLSEMLQGLRKD---ELEAREKlERYRNKLHEIKRYleksnlpglpedylemffevsDEIEALAEE 463
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1803357890 1257 LEKAKL-------ELEEAQDTVSNLHQQVqdrNEVIEAAN 1289
Cdd:PRK04778 464 LEEKPInmeavnrLLEEATEDVETLEEET---EELVENAT 500
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
901-1224 |
6.96e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 40.45 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 901 HLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE 980
Cdd:pfam04108 22 LLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQLLKDLDAALERLEETLDKLRNTPVEPALPPGEEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 981 EKY-------TTIKDLTAELRECKMEIEDKKQElleMDQALKERNWELKQraaqvTHLDMTIREHRGEMEQKIIKLEGTL 1053
Cdd:pfam04108 102 QKTlldfideDSVEILRDALKELIDELQAAQES---LDSDLKRFDDDLRD-----LQKELESLSSPSESISLIPTLLKEL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1054 EKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ----NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKE 1129
Cdd:pfam04108 174 ESLEEEMASLLESLTNHYDQCVTAVKLTEGGRAEMLEvlenDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 1130 AIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKE-KDAHGNHLAEelgasKVREAHLEARMQ 1208
Cdd:pfam04108 254 LLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELEDLREFYEGfPSAYGSLLLE-----VERRREWAEKMK 328
|
330
....*....|....*.
gi 1803357890 1209 AEIKKLSAEVESLKEA 1224
Cdd:pfam04108 329 KILRKLAEELDRLQEE 344
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
834-1045 |
7.16e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 7.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 834 SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 913
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 914 TELEKKTNAVKELEKL--QHSTETELTEALQKREVLET------------ELQNAHGELKSTLRQLQELRDVLQKAQLSL 979
Cdd:COG4942 97 AELEAQKEELAELLRAlyRLGRQPPLALLLSPEDFLDAvrrlqylkylapARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1803357890 980 EEKYTTIKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045
Cdd:COG4942 177 EALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
291-392 |
7.85e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.81 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 291 CGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDE---ILRDKFSLMNE-NRE 366
Cdd:pfam05911 676 NDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKEsnsLAETQLKCMAEsYED 755
|
90 100
....*....|....*....|....*.
gi 1803357890 367 LKVRVAAQNERLDLCQQEIESSRVEL 392
Cdd:pfam05911 756 LETRLTELEAELNELRQKFEALEVEL 781
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
111-310 |
8.35e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 8.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLR 190
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1803357890 191 EAENKLE--QSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEK-LEKVQ 267
Cdd:PRK03918 311 EIEKRLSrlEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtPEKLE 390
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1803357890 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKE 310
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
|
| |
