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Conserved domains on  [gi|1838744821|ref|NP_001369350|]
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choriogonadotropin subunit beta variant 1 isoform 2 [Homo sapiens]

Protein Classification

GHB_like domain-containing protein( domain architecture ID 11251631)

GHB_like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GHB smart00068
Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones ...
 11-117 3.17e-50

Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.


:

Pssm-ID: 214502  Cd Length: 107  Bit Score: 155.91  E-value: 3.17e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821   11 LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAV 90
Cdd:smart00068   1 LRPGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDPVVTYPV 80

                           90       100
                   ....*....|....*....|....*..
gi 1838744821   91 ALSCQCALCRRSTTDCGGPKDHPLTCD 117
Cdd:smart00068  81 ALSCHCGKCNTDTTDCTVESLGPDSCS 107
 
Name Accession Description Interval E-value
GHB smart00068
Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones ...
 11-117 3.17e-50

Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.


Pssm-ID: 214502  Cd Length: 107  Bit Score: 155.91  E-value: 3.17e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821   11 LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAV 90
Cdd:smart00068   1 LRPGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDPVVTYPV 80

                           90       100
                   ....*....|....*....|....*..
gi 1838744821   91 ALSCQCALCRRSTTDCGGPKDHPLTCD 117
Cdd:smart00068  81 ALSCHCGKCNTDTTDCTVESLGPDSCS 107
Cys_knot pfam00007
Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of ...
 12-116 7.15e-43

Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of various extracellular proteins. It is believed to be involved in disulfide-linked dimerization.


Pssm-ID: 394966  Cd Length: 105  Bit Score: 137.15  E-value: 7.15e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821  12 RPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVA 91
Cdd:pfam00007   1 RKKCIPTNYTISVEKEGCTSCKTINTTICAGYCYTRDPVYKDGRRAVSQRVCTYRDVTYETVVLPGCPPGVDPTVTYPVA 80

                          90       100
                  ....*....|....*....|....*
gi 1838744821  92 LSCQCALCRRSTTDCGGPKDHPLTC 116
Cdd:pfam00007  81 LSCHCGNCPTDNSDCTRLSLQPDSC 105
GHB_like cd00069
Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the ...
 15-109 7.89e-39

Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the beta chains of gonadotropins, thyrotropins, follitropins, choriogonadotropins and more. The members are reproductive hormones that consist of two glycosylated chains (alpha and beta), which form a tightly bound dimer.


Pssm-ID: 200450  Cd Length: 96  Bit Score: 126.63  E-value: 7.89e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821  15 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL-PALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALS 93
Cdd:cd00069     1 CHPRNYTIAVEKEGCGVCLAINTTICAGRCDTRDPVYKSPPyKPSHQPVCTYDEWRYETVRLPGCPPGVDPTYTYPVALS 80

                          90
                  ....*....|....*.
gi 1838744821  94 CQCALCRRSTTDCGGP 109
Cdd:cd00069    81 CRCGLCNTDTTDCTRL 96
 
Name Accession Description Interval E-value
GHB smart00068
Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones ...
 11-117 3.17e-50

Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.


Pssm-ID: 214502  Cd Length: 107  Bit Score: 155.91  E-value: 3.17e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821   11 LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAV 90
Cdd:smart00068   1 LRPGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDPVVTYPV 80

                           90       100
                   ....*....|....*....|....*..
gi 1838744821   91 ALSCQCALCRRSTTDCGGPKDHPLTCD 117
Cdd:smart00068  81 ALSCHCGKCNTDTTDCTVESLGPDSCS 107
Cys_knot pfam00007
Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of ...
 12-116 7.15e-43

Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of various extracellular proteins. It is believed to be involved in disulfide-linked dimerization.


Pssm-ID: 394966  Cd Length: 105  Bit Score: 137.15  E-value: 7.15e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821  12 RPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVA 91
Cdd:pfam00007   1 RKKCIPTNYTISVEKEGCTSCKTINTTICAGYCYTRDPVYKDGRRAVSQRVCTYRDVTYETVVLPGCPPGVDPTVTYPVA 80

                          90       100
                  ....*....|....*....|....*
gi 1838744821  92 LSCQCALCRRSTTDCGGPKDHPLTC 116
Cdd:pfam00007  81 LSCHCGNCPTDNSDCTRLSLQPDSC 105
GHB_like cd00069
Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the ...
 15-109 7.89e-39

Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the beta chains of gonadotropins, thyrotropins, follitropins, choriogonadotropins and more. The members are reproductive hormones that consist of two glycosylated chains (alpha and beta), which form a tightly bound dimer.


Pssm-ID: 200450  Cd Length: 96  Bit Score: 126.63  E-value: 7.89e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1838744821  15 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL-PALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALS 93
Cdd:cd00069     1 CHPRNYTIAVEKEGCGVCLAINTTICAGRCDTRDPVYKSPPyKPSHQPVCTYDEWRYETVRLPGCPPGVDPTYTYPVALS 80

                          90
                  ....*....|....*.
gi 1838744821  94 CQCALCRRSTTDCGGP 109
Cdd:cd00069    81 CRCGLCNTDTTDCTRL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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