NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1843419834|ref|NP_001369626|]
View 

muscleblind-like protein 2 isoform 24 [Homo sapiens]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10646956)

zinc finger CCCH domain-containing protein similar to Homo sapiens Muscleblind-like proteins

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
17-40 2.84e-04

zinc finger;


:

Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 2.84e-04
                           10        20
                   ....*....|....*....|....
gi 1843419834   17 EVCRQFQRGTCSRSDeECKFAHPP 40
Cdd:smart00356   5 ELCKFFKRGYCPRGD-RCKFAHPL 27
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
17-40 2.84e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 2.84e-04
                           10        20
                   ....*....|....*....|....
gi 1843419834   17 EVCRQFQRGTCSRSDeECKFAHPP 40
Cdd:smart00356   5 ELCKFFKRGYCPRGD-RCKFAHPL 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
17-40 1.51e-03

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 34.86  E-value: 1.51e-03
                          10        20
                  ....*....|....*....|....*
gi 1843419834  17 EVCRQFQR-GTCSRSDEeCKFAHPP 40
Cdd:pfam00642   4 ELCRFFLRtGYCKYGDR-CKFAHGQ 27
 
Name Accession Description Interval E-value
ZnF_C3H1 smart00356
zinc finger;
17-40 2.84e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 2.84e-04
                           10        20
                   ....*....|....*....|....
gi 1843419834   17 EVCRQFQRGTCSRSDeECKFAHPP 40
Cdd:smart00356   5 ELCKFFKRGYCPRGD-RCKFAHPL 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
17-40 1.51e-03

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 34.86  E-value: 1.51e-03
                          10        20
                  ....*....|....*....|....*
gi 1843419834  17 EVCRQFQR-GTCSRSDEeCKFAHPP 40
Cdd:pfam00642   4 ELCRFFLRtGYCKYGDR-CKFAHGQ 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH