|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
192-349 |
6.07e-09 |
|
FOG: Zn-finger [General function prediction only]; :
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 58.55 E-value: 6.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 192 VTPAEQADKPYSCPICQKPFKHLSELSRHER--IHTGE--KPYKCT--LCDKSFSQSSHLVHHKRTHSSERPYKC--AVC 263
Cdd:COG5048 280 SSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPysLCGKLFSRNDALKRHILLHTSISPAKEklLNS 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 264 EKTFKHRSHLVRH--MYAHSGEHH--LFRCNV--CELHFKESSELLQHPCT--PSGERPFRCGECQKAFKRPSDLRQHER 335
Cdd:COG5048 360 SSKFSPLLNNEPPqsLQQYKDLKNdkKSETLSnsCIRNFKRDSNLSLHIIThlSFRPYNCKNPPCSKSFNRHYNLIPHKK 439
|
170
....*....|....
gi 1858900788 336 THSAERPFKCDLCP 349
Cdd:COG5048 440 IHTNHAPLLCSILK 453
|
|
| SFP1 super family |
cl25788 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
425-505 |
5.28e-07 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; The actual alignment was detected with superfamily member COG5189:
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 52.41 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 425 ERPFKCPV--CNKAYKRASALQKHQL-AHCAAAEKPlrctlcerrffsSSEFVQHRCDPAREKPLKCPDCEKRFKYASDL 501
Cdd:COG5189 347 GKPYKCPVegCNKKYKNQNGLKYHMLhGHQNQKLHE------------NPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGL 414
|
....
gi 1858900788 502 QRHR 505
Cdd:COG5189 415 KYHR 418
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
500-525 |
5.01e-05 |
|
Zinc-finger double domain; :
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 40.43 E-value: 5.01e-05
|
| SFP1 super family |
cl25788 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
366-446 |
1.77e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; The actual alignment was detected with superfamily member COG5189:
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 40.86 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 366 KTEEPFKCGL--CEKGFGQPSHLLYHQ---HVHTLETLFKCPVCQKGFDqsaellrhkclpgAAERPFKCPVCNKAYKRA 440
Cdd:COG5189 345 KDGKPYKCPVegCNKKYKNQNGLKYHMlhgHQNQKLHENPSPEKMNIFS-------------AKDKPYRCEVCDKRYKNL 411
|
....*.
gi 1858900788 441 SALQKH 446
Cdd:COG5189 412 NGLKYH 417
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
192-349 |
6.07e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 58.55 E-value: 6.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 192 VTPAEQADKPYSCPICQKPFKHLSELSRHER--IHTGE--KPYKCT--LCDKSFSQSSHLVHHKRTHSSERPYKC--AVC 263
Cdd:COG5048 280 SSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPysLCGKLFSRNDALKRHILLHTSISPAKEklLNS 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 264 EKTFKHRSHLVRH--MYAHSGEHH--LFRCNV--CELHFKESSELLQHPCT--PSGERPFRCGECQKAFKRPSDLRQHER 335
Cdd:COG5048 360 SSKFSPLLNNEPPqsLQQYKDLKNdkKSETLSnsCIRNFKRDSNLSLHIIThlSFRPYNCKNPPCSKSFNRHYNLIPHKK 439
|
170
....*....|....
gi 1858900788 336 THSAERPFKCDLCP 349
Cdd:COG5048 440 IHTNHAPLLCSILK 453
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
425-505 |
5.28e-07 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 52.41 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 425 ERPFKCPV--CNKAYKRASALQKHQL-AHCAAAEKPlrctlcerrffsSSEFVQHRCDPAREKPLKCPDCEKRFKYASDL 501
Cdd:COG5189 347 GKPYKCPVegCNKKYKNQNGLKYHMLhGHQNQKLHE------------NPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGL 414
|
....
gi 1858900788 502 QRHR 505
Cdd:COG5189 415 KYHR 418
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
500-525 |
5.01e-05 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 40.43 E-value: 5.01e-05
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
216-241 |
1.39e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 39.28 E-value: 1.39e-04
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
366-446 |
1.77e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 40.86 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 366 KTEEPFKCGL--CEKGFGQPSHLLYHQ---HVHTLETLFKCPVCQKGFDqsaellrhkclpgAAERPFKCPVCNKAYKRA 440
Cdd:COG5189 345 KDGKPYKCPVegCNKKYKNQNGLKYHMlhgHQNQKLHENPSPEKMNIFS-------------AKDKPYRCEVCDKRYKNL 411
|
....*.
gi 1858900788 441 SALQKH 446
Cdd:COG5189 412 NGLKYH 417
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
192-349 |
6.07e-09 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 58.55 E-value: 6.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 192 VTPAEQADKPYSCPICQKPFKHLSELSRHER--IHTGE--KPYKCT--LCDKSFSQSSHLVHHKRTHSSERPYKC--AVC 263
Cdd:COG5048 280 SSSEKGFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPysLCGKLFSRNDALKRHILLHTSISPAKEklLNS 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 264 EKTFKHRSHLVRH--MYAHSGEHH--LFRCNV--CELHFKESSELLQHPCT--PSGERPFRCGECQKAFKRPSDLRQHER 335
Cdd:COG5048 360 SSKFSPLLNNEPPqsLQQYKDLKNdkKSETLSnsCIRNFKRDSNLSLHIIThlSFRPYNCKNPPCSKSFNRHYNLIPHKK 439
|
170
....*....|....
gi 1858900788 336 THSAERPFKCDLCP 349
Cdd:COG5048 440 IHTNHAPLLCSILK 453
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
191-524 |
1.57e-08 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 57.01 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 191 TVTPAEQADKPYSCPICQKPFKHLSELSRHERIHTGEKPYKCTL--CDKSFSQSSHLVHHKRTHSSE-----------RP 257
Cdd:COG5048 23 TLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNpsdlnskslplSN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 258 YKCAVCEKTFKH---------RSHLVRHMYA-----------HSGEHHLFRCNVCELHFKESSELLQ------------- 304
Cdd:COG5048 103 SKASSSSLSSSSsnsndnnllSSHSLPPSSRdpqlpdllsisNLRNNPLPGNNSSSVNTPQSNSLHPplpanslskdpss 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 305 ------HPCTPSGERPFRCGECQKAFKRPSDLRQHERTHSAERPFKCDLCPMGFKQQYALMRHRRTHKTEEPFKCGLCEK 378
Cdd:COG5048 183 nlslliSSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPR 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 379 GFGQPSHLLYHQHVHTLE-------TLFKCPVCQKGFDQSAELLRHKCL---PGAAERPFKCPV--CNKAYKRASALQKH 446
Cdd:COG5048 263 SSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnhSGESLKPFSCPYslCGKLFSRNDALKRH 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 447 QLAH---CAAAEKPLRCTLCERRFF--SSSEFVQHRCDPAREKPLKC--PDCEKRFKYASDLQRHRRVHTGEKPYKCPN- 518
Cdd:COG5048 343 ILLHtsiSPAKEKLLNSSSKFSPLLnnEPPQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYNCKNp 422
|
....*..
gi 1858900788 519 -CDKAFK 524
Cdd:COG5048 423 pCSKSFN 429
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
425-505 |
5.28e-07 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 52.41 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 425 ERPFKCPV--CNKAYKRASALQKHQL-AHCAAAEKPlrctlcerrffsSSEFVQHRCDPAREKPLKCPDCEKRFKYASDL 501
Cdd:COG5189 347 GKPYKCPVegCNKKYKNQNGLKYHMLhGHQNQKLHE------------NPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGL 414
|
....
gi 1858900788 502 QRHR 505
Cdd:COG5189 415 KYHR 418
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
500-525 |
5.01e-05 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 40.43 E-value: 5.01e-05
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
206-418 |
5.85e-05 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 45.84 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 206 ICQKPFKHLSELSRHERIHTGEKP--YKCTLCDKSFSQSSHLVHHKRTHSSER-PYKCAVCEKTFKHRSHLVRHMYAHSg 282
Cdd:COG5048 235 LSPKSLLSQSPSSLSSSDSSSSASesPRSSLPTASSQSSSPNESDSSSEKGFSlPIKSKQCNISFSRSSPLTRHLRSVN- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 283 ehhlfrcnvcelhfKESSELLQHPCTPSGerpfrcgeCQKAFKRPSDLRQHERTHSAERPFKCDLCPMGFKQQYAL---- 358
Cdd:COG5048 314 --------------HSGESLKPFSCPYSL--------CGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLnnep 371
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1858900788 359 ---MRHRRTHKTEEPFKC--GLCEKGFGQPSHLLYHQHVHTLET--LFKCPVCQKGFDQSAELLRHK 418
Cdd:COG5048 372 pqsLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRpyNCKNPPCSKSFNRHYNLIPHK 438
|
|
| zf-H2C2_2 |
pfam13465 |
Zinc-finger double domain; |
216-241 |
1.39e-04 |
|
Zinc-finger double domain;
Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 39.28 E-value: 1.39e-04
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
228-549 |
8.44e-04 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 41.99 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 228 KPYKCTLCDKSFSQSSHLVHHKRTHSSERPYKCAV--CEKTFKHRSHLVRHMYAHSGEHhlfrcnvceLHFKESSELLQH 305
Cdd:COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNP---------SDLNSKSLPLSN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 306 PCTPSGERPFrcgeCQKAFKRPSDLRQHERTHSAERPFKCDLCP---MGFKQQYALMRHRRTHKTEEPFK-----CGLCE 377
Cdd:COG5048 103 SKASSSSLSS----SSSNSNDNNLLSSHSLPPSSRDPQLPDLLSisnLRNNPLPGNNSSSVNTPQSNSLHpplpaNSLSK 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 378 KGFGQPSHLLYHQHVHTLETLFKCPVCQK----GFDQSAELLRHKclPGAAERPFKCPVCNKAYKRASALQKHQLAHCAA 453
Cdd:COG5048 179 DPSSNLSLLISSNVSTSIPSSSENSPLSSsysiPSSSSDQNLENS--SSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSS 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 454 AEKPLRCTLCERRFFSSS----EFVQHRcdpAREKPLKCPDCEKRFKYASDLQRHRR--VHTGE--KPYKCP--NCDKAF 523
Cdd:COG5048 257 ASESPRSSLPTASSQSSSpnesDSSSEK---GFSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPysLCGKLF 333
|
330 340
....*....|....*....|....*.
gi 1858900788 524 KQREHLNKHQGVHAREQQFKCVWCGE 549
Cdd:COG5048 334 SRNDALKRHILLHTSISPAKEKLLNS 359
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
255-338 |
8.92e-04 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 42.01 E-value: 8.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 255 ERPYKCAV--CEKTFKHRSHLVRHMYahsgEHHlfrcnvCELHFKESSELLQHPCTPSGERPFRCGECQKAFKRPSDLRQ 332
Cdd:COG5189 347 GKPYKCPVegCNKKYKNQNGLKYHML----HGH------QNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416
|
....*.
gi 1858900788 333 HeRTHS 338
Cdd:COG5189 417 H-RKHS 421
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
366-446 |
1.77e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 40.86 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 366 KTEEPFKCGL--CEKGFGQPSHLLYHQ---HVHTLETLFKCPVCQKGFDqsaellrhkclpgAAERPFKCPVCNKAYKRA 440
Cdd:COG5189 345 KDGKPYKCPVegCNKKYKNQNGLKYHMlhgHQNQKLHENPSPEKMNIFS-------------AKDKPYRCEVCDKRYKNL 411
|
....*.
gi 1858900788 441 SALQKH 446
Cdd:COG5189 412 NGLKYH 417
|
|
| SFP1 |
COG5189 |
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
226-272 |
4.29e-03 |
|
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];
Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 39.70 E-value: 4.29e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1858900788 226 GEKPYKCTL--CDKSFSQSSHLVHHKRT-HSSE------------------RPYKCAVCEKTFK-------HRSH 272
Cdd:COG5189 346 DGKPYKCPVegCNKKYKNQNGLKYHMLHgHQNQklhenpspekmnifsakdKPYRCEVCDKRYKnlnglkyHRKH 420
|
|
| COG5048 |
COG5048 |
FOG: Zn-finger [General function prediction only]; |
89-532 |
6.34e-03 |
|
FOG: Zn-finger [General function prediction only];
Pssm-ID: 227381 [Multi-domain] Cd Length: 467 Bit Score: 39.29 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 89 SSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCVQAEQKPFVCGV--CKMGFSLLTSLAQHHSSH--SGLVKCSICE 164
Cdd:COG5048 19 TPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHhnNPSDLNSKSL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 165 KTYKpaeaaepatTAAPSLPAAPAPSTVTPAEQADKPYSCPICQKPFKHLSELSRHERIHtgeKPYKCTLCDKSFSQSSH 244
Cdd:COG5048 99 PLSN---------SKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNN---PLPGNNSSSVNTPQSNS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 245 LVH-HKRTHSSERPYKCAVCE----KTFKHRSHLVRHMYAHSGEhhlfrcnvcelhfKESSELLQHPCTPSGERPfrCGE 319
Cdd:COG5048 167 LHPpLPANSLSKDPSSNLSLLissnVSTSIPSSSENSPLSSSYS-------------IPSSSSDQNLENSSSSLP--LTT 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 320 CQKAFKRPSDLRQHERTHSAERPFKCDLCPMGFKQQYALMRHRRTHKTEE-------PFKCGLCEKGFGQPSHLLYHQ-- 390
Cdd:COG5048 232 NSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSsekgfslPIKSKQCNISFSRSSPLTRHLrs 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858900788 391 HVHTLETL--FKCPV--CQKGFDQSAELLRHKCLPGAAeRPFKCP--VCNKAYKRASA---LQKHQLAHCAAAEKPLRCT 461
Cdd:COG5048 312 VNHSGESLkpFSCPYslCGKLFSRNDALKRHILLHTSI-SPAKEKllNSSSKFSPLLNnepPQSLQQYKDLKNDKKSETL 390
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1858900788 462 L------CERRFFSSSEFVQHRCDpaREKPLKCPDCEKRFKYASDLQRHRRVHTgEKPYKCPNCDKAFKQREHLNKH 532
Cdd:COG5048 391 SnscirnFKRDSNLSLHIITHLSF--RPYNCKNPPCSKSFNRHYNLIPHKKIHT-NHAPLLCSILKSFRRDLDLSNH 464
|
|
| zf-C2H2 |
pfam00096 |
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
230-252 |
8.04e-03 |
|
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.
Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.20 E-value: 8.04e-03
|
|