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Conserved domains on  [gi|1867157817|ref|NP_001371982|]
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podoplanin isoform d [Homo sapiens]

Protein Classification

Podoplanin domain-containing protein( domain architecture ID 10530717)

Podoplanin domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Podoplanin pfam05808
Podoplanin; This family consists of several mammalian podoplanin like proteins which are ...
 1-117 1.65e-52

Podoplanin; This family consists of several mammalian podoplanin like proteins which are thought to control specifically the unique shape of podocytes.


:

Pssm-ID: 461746  Cd Length: 135  Bit Score: 161.52  E-value: 1.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867157817   1 MPGAEDDVVTPGTSEDRYKS-GLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTV 79
Cdd:pfam05808  16 TPGVEDNVVTTGASEEPYESsGLTTLVPTNTESVTDPHVEDLPTQESTVHAHEESQSTTTPNVATSHSREKVGEETQTTV 95

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1867157817  80 EKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGR 117
Cdd:pfam05808  96 EKDGLATVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGR 133
 
Name Accession Description Interval E-value
Podoplanin pfam05808
Podoplanin; This family consists of several mammalian podoplanin like proteins which are ...
 1-117 1.65e-52

Podoplanin; This family consists of several mammalian podoplanin like proteins which are thought to control specifically the unique shape of podocytes.


Pssm-ID: 461746  Cd Length: 135  Bit Score: 161.52  E-value: 1.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867157817   1 MPGAEDDVVTPGTSEDRYKS-GLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTV 79
Cdd:pfam05808  16 TPGVEDNVVTTGASEEPYESsGLTTLVPTNTESVTDPHVEDLPTQESTVHAHEESQSTTTPNVATSHSREKVGEETQTTV 95

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1867157817  80 EKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGR 117
Cdd:pfam05808  96 EKDGLATVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGR 133
 
Name Accession Description Interval E-value
Podoplanin pfam05808
Podoplanin; This family consists of several mammalian podoplanin like proteins which are ...
 1-117 1.65e-52

Podoplanin; This family consists of several mammalian podoplanin like proteins which are thought to control specifically the unique shape of podocytes.


Pssm-ID: 461746  Cd Length: 135  Bit Score: 161.52  E-value: 1.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867157817   1 MPGAEDDVVTPGTSEDRYKS-GLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTV 79
Cdd:pfam05808  16 TPGVEDNVVTTGASEEPYESsGLTTLVPTNTESVTDPHVEDLPTQESTVHAHEESQSTTTPNVATSHSREKVGEETQTTV 95

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1867157817  80 EKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGR 117
Cdd:pfam05808  96 EKDGLATVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGR 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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