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Conserved domains on  [gi|1897357913|ref|NP_001373578|]
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solute carrier family 51 subunit beta precursor [Danio rerio]

Protein Classification

RICIN and OSTbeta domain-containing protein( domain architecture ID 12211793)

RICIN and OSTbeta domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
beta-trefoil_Ricin_MRC-like cd23385
ricin B-type lectin domain, beta-trefoil fold, found in the macrophage mannose receptor (MRC) ...
17-124 2.73e-19

ricin B-type lectin domain, beta-trefoil fold, found in the macrophage mannose receptor (MRC) family; The MRC family includes MRC1-2, receptor-type tyrosine-protein phosphatase beta (PTPRB) isoform e, secretory phospholipase A2 receptor (PLA2R1), and lymphocyte antigen 75 (Ly-75). MRC1 mediates the endocytosis of glycoproteins by macrophages. It binds both sulfated and non-sulfated polysaccharide chains, and acts as a phagocytic receptor for bacteria, fungi, and other pathogens. It also acts as a receptor for Dengue virus envelope protein E. MRC2 may play a role as an endocytotic lectin receptor displaying calcium-dependent lectin activity. It internalizes glycosylated ligands from the extracellular space for release in an endosomal compartment via clathrin-mediated endocytosis. It may be involved in plasminogen activation system controlling the extracellular level of PLAUR/PLAU, and thus may regulate protease activity at the cell surface. It may contribute to cellular uptake, remodeling, and degradation of extracellular collagen matrices. It may play a role during cancer progression as well as in other chronic tissue destructive diseases acting on collagen turnover. It may participate in remodeling of extracellular matrix cooperating with the matrix metalloproteinases (MMPs). PTPRB (EC 3.1.3.48), also called protein-tyrosine phosphatase beta, plays an important role in blood vessel remodeling and angiogenesis. It is not necessary for the initial formation of the blood vessels but is essential for their maintenance and remodeling. It is also essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells that requires the presence of plakoglobin. PLA2R1 is a receptor for secretory phospholipase A2 (sPLA2). It acts as a receptor for phospholipase sPLA2-IB/PLA2G1B but not sPLA2-IIA/PLA2G2A. It can also bind to snake PA2-like toxins. It may be involved in responses in proinflammatory cytokine productions during endotoxic shock. It also has endocytic properties and rapidly internalizes sPLA2 ligands, which is particularly important for the clearance of extracellular sPLA2s to protect their potent enzymatic activities. Ly-75 acts as an endocytic receptor to direct captured antigens from the extracellular space to a specialized antigen-processing compartment. It causes reduced proliferation of B-lymphocytes. All family members contain a ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. One member of this family, MRC1, is missing the gamma subdomain.


:

Pssm-ID: 467784 [Multi-domain]  Cd Length: 119  Bit Score: 81.88  E-value: 2.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  17 SFMMFSSRDGLCLE-DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSA---IHSDPVRTVSCESAEQIQ-WRC 91
Cdd:cd23385     2 SFLIYNEDLGKCLAaRSSSSKVSLSTCNPNSPNQQWKWTSGHRLFNVGTGKCLGVsssSPSSPLRLFECDSEDELQkWKC 81
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1897357913  92 KDQQLIGLK-----NGLVLSAERGKITLSRAGQHMWRS 124
Cdd:cd23385    82 SKDGLLLLKglgllLLYDKSGKNVVVSKGSGLSSRWKI 119
OSTbeta super family cl20921
Organic solute transporter subunit beta protein;
170-277 4.06e-14

Organic solute transporter subunit beta protein;


The actual alignment was detected with superfamily member pfam15048:

Pssm-ID: 405697  Cd Length: 122  Bit Score: 67.85  E-value: 4.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913 170 WYYRTEDPTPWKFGMLAFAFLGLLIGAMLIVMGMMGNRNRKQIAKYKASTKV---KEVKA-ETEELQVIITDNNEEKTHh 245
Cdd:pfam15048  24 WFFRVEDASPWNYSILALAAVVVVISVVLLGRSIQANRNRKMQPPEKETPEVlylAEAGTkDDNSLNILRETLLSEKPN- 102
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1897357913 246 ntthnsgvsdeLKPGEImvTWRDGNVST-LYPE 277
Cdd:pfam15048 103 -----------LAQVEI--ELKERDVSLvLLPD 122
 
Name Accession Description Interval E-value
beta-trefoil_Ricin_MRC-like cd23385
ricin B-type lectin domain, beta-trefoil fold, found in the macrophage mannose receptor (MRC) ...
17-124 2.73e-19

ricin B-type lectin domain, beta-trefoil fold, found in the macrophage mannose receptor (MRC) family; The MRC family includes MRC1-2, receptor-type tyrosine-protein phosphatase beta (PTPRB) isoform e, secretory phospholipase A2 receptor (PLA2R1), and lymphocyte antigen 75 (Ly-75). MRC1 mediates the endocytosis of glycoproteins by macrophages. It binds both sulfated and non-sulfated polysaccharide chains, and acts as a phagocytic receptor for bacteria, fungi, and other pathogens. It also acts as a receptor for Dengue virus envelope protein E. MRC2 may play a role as an endocytotic lectin receptor displaying calcium-dependent lectin activity. It internalizes glycosylated ligands from the extracellular space for release in an endosomal compartment via clathrin-mediated endocytosis. It may be involved in plasminogen activation system controlling the extracellular level of PLAUR/PLAU, and thus may regulate protease activity at the cell surface. It may contribute to cellular uptake, remodeling, and degradation of extracellular collagen matrices. It may play a role during cancer progression as well as in other chronic tissue destructive diseases acting on collagen turnover. It may participate in remodeling of extracellular matrix cooperating with the matrix metalloproteinases (MMPs). PTPRB (EC 3.1.3.48), also called protein-tyrosine phosphatase beta, plays an important role in blood vessel remodeling and angiogenesis. It is not necessary for the initial formation of the blood vessels but is essential for their maintenance and remodeling. It is also essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells that requires the presence of plakoglobin. PLA2R1 is a receptor for secretory phospholipase A2 (sPLA2). It acts as a receptor for phospholipase sPLA2-IB/PLA2G1B but not sPLA2-IIA/PLA2G2A. It can also bind to snake PA2-like toxins. It may be involved in responses in proinflammatory cytokine productions during endotoxic shock. It also has endocytic properties and rapidly internalizes sPLA2 ligands, which is particularly important for the clearance of extracellular sPLA2s to protect their potent enzymatic activities. Ly-75 acts as an endocytic receptor to direct captured antigens from the extracellular space to a specialized antigen-processing compartment. It causes reduced proliferation of B-lymphocytes. All family members contain a ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. One member of this family, MRC1, is missing the gamma subdomain.


Pssm-ID: 467784 [Multi-domain]  Cd Length: 119  Bit Score: 81.88  E-value: 2.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  17 SFMMFSSRDGLCLE-DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSA---IHSDPVRTVSCESAEQIQ-WRC 91
Cdd:cd23385     2 SFLIYNEDLGKCLAaRSSSSKVSLSTCNPNSPNQQWKWTSGHRLFNVGTGKCLGVsssSPSSPLRLFECDSEDELQkWKC 81
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1897357913  92 KDQQLIGLK-----NGLVLSAERGKITLSRAGQHMWRS 124
Cdd:cd23385    82 SKDGLLLLKglgllLLYDKSGKNVVVSKGSGLSSRWKI 119
OSTbeta pfam15048
Organic solute transporter subunit beta protein;
170-277 4.06e-14

Organic solute transporter subunit beta protein;


Pssm-ID: 405697  Cd Length: 122  Bit Score: 67.85  E-value: 4.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913 170 WYYRTEDPTPWKFGMLAFAFLGLLIGAMLIVMGMMGNRNRKQIAKYKASTKV---KEVKA-ETEELQVIITDNNEEKTHh 245
Cdd:pfam15048  24 WFFRVEDASPWNYSILALAAVVVVISVVLLGRSIQANRNRKMQPPEKETPEVlylAEAGTkDDNSLNILRETLLSEKPN- 102
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1897357913 246 ntthnsgvsdeLKPGEImvTWRDGNVST-LYPE 277
Cdd:pfam15048 103 -----------LAQVEI--ELKERDVSLvLLPD 122
RICIN smart00458
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.
21-111 1.01e-09

Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.


Pssm-ID: 214672 [Multi-domain]  Cd Length: 118  Bit Score: 55.60  E-value: 1.01e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913   21 FSSRDGLCLE-DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSAIHS--DPVRTVSCES-AEQIQWRC-KDQQ 95
Cdd:smart00458   2 ISGNTGKCLDvNGNKNPVGLFDCHGTGGNQLWKLTSDGAIRIKDTDLCLTANGNtgSTVTLYSCDGtNDNQYWEVnKDGT 81
                           90
                   ....*....|....*.
gi 1897357913   96 LIGLKNGLVLSAERGK 111
Cdd:smart00458  82 IRNPDSGKCLDVKDGN 97
Ricin_B_lectin pfam00652
Ricin-type beta-trefoil lectin domain;
17-133 6.06e-07

Ricin-type beta-trefoil lectin domain;


Pssm-ID: 395527 [Multi-domain]  Cd Length: 126  Bit Score: 47.91  E-value: 6.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  17 SFMMFSSRDGLCLE----DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSAIHSDP---VRTVSCESA-EQIQ 88
Cdd:pfam00652   2 TGRIRNRASGKCLDvpggSSAGGPVGLYPCHGSNGNQLWTLTGDGTIRSVASDLCLDVGSTADgakVVLWPCHPGnGNQR 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1897357913  89 WRCKDQ--QLIGLKNGLVLSAERGKITLSRAgqHMWRSvDTADICQK 133
Cdd:pfam00652  82 WRYDEDgtQIRNPQSGKCLDVSGAGTSNGKV--ILWTC-DSGNPNQQ 125
 
Name Accession Description Interval E-value
beta-trefoil_Ricin_MRC-like cd23385
ricin B-type lectin domain, beta-trefoil fold, found in the macrophage mannose receptor (MRC) ...
17-124 2.73e-19

ricin B-type lectin domain, beta-trefoil fold, found in the macrophage mannose receptor (MRC) family; The MRC family includes MRC1-2, receptor-type tyrosine-protein phosphatase beta (PTPRB) isoform e, secretory phospholipase A2 receptor (PLA2R1), and lymphocyte antigen 75 (Ly-75). MRC1 mediates the endocytosis of glycoproteins by macrophages. It binds both sulfated and non-sulfated polysaccharide chains, and acts as a phagocytic receptor for bacteria, fungi, and other pathogens. It also acts as a receptor for Dengue virus envelope protein E. MRC2 may play a role as an endocytotic lectin receptor displaying calcium-dependent lectin activity. It internalizes glycosylated ligands from the extracellular space for release in an endosomal compartment via clathrin-mediated endocytosis. It may be involved in plasminogen activation system controlling the extracellular level of PLAUR/PLAU, and thus may regulate protease activity at the cell surface. It may contribute to cellular uptake, remodeling, and degradation of extracellular collagen matrices. It may play a role during cancer progression as well as in other chronic tissue destructive diseases acting on collagen turnover. It may participate in remodeling of extracellular matrix cooperating with the matrix metalloproteinases (MMPs). PTPRB (EC 3.1.3.48), also called protein-tyrosine phosphatase beta, plays an important role in blood vessel remodeling and angiogenesis. It is not necessary for the initial formation of the blood vessels but is essential for their maintenance and remodeling. It is also essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells that requires the presence of plakoglobin. PLA2R1 is a receptor for secretory phospholipase A2 (sPLA2). It acts as a receptor for phospholipase sPLA2-IB/PLA2G1B but not sPLA2-IIA/PLA2G2A. It can also bind to snake PA2-like toxins. It may be involved in responses in proinflammatory cytokine productions during endotoxic shock. It also has endocytic properties and rapidly internalizes sPLA2 ligands, which is particularly important for the clearance of extracellular sPLA2s to protect their potent enzymatic activities. Ly-75 acts as an endocytic receptor to direct captured antigens from the extracellular space to a specialized antigen-processing compartment. It causes reduced proliferation of B-lymphocytes. All family members contain a ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. One member of this family, MRC1, is missing the gamma subdomain.


Pssm-ID: 467784 [Multi-domain]  Cd Length: 119  Bit Score: 81.88  E-value: 2.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  17 SFMMFSSRDGLCLE-DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSA---IHSDPVRTVSCESAEQIQ-WRC 91
Cdd:cd23385     2 SFLIYNEDLGKCLAaRSSSSKVSLSTCNPNSPNQQWKWTSGHRLFNVGTGKCLGVsssSPSSPLRLFECDSEDELQkWKC 81
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1897357913  92 KDQQLIGLK-----NGLVLSAERGKITLSRAGQHMWRS 124
Cdd:cd23385    82 SKDGLLLLKglgllLLYDKSGKNVVVSKGSGLSSRWKI 119
OSTbeta pfam15048
Organic solute transporter subunit beta protein;
170-277 4.06e-14

Organic solute transporter subunit beta protein;


Pssm-ID: 405697  Cd Length: 122  Bit Score: 67.85  E-value: 4.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913 170 WYYRTEDPTPWKFGMLAFAFLGLLIGAMLIVMGMMGNRNRKQIAKYKASTKV---KEVKA-ETEELQVIITDNNEEKTHh 245
Cdd:pfam15048  24 WFFRVEDASPWNYSILALAAVVVVISVVLLGRSIQANRNRKMQPPEKETPEVlylAEAGTkDDNSLNILRETLLSEKPN- 102
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1897357913 246 ntthnsgvsdeLKPGEImvTWRDGNVST-LYPE 277
Cdd:pfam15048 103 -----------LAQVEI--ELKERDVSLvLLPD 122
beta-trefoil_Ricin_MRC1 cd23407
ricin B-type lectin domain, beta-trefoil fold, found in macrophage mannose receptor 1 (MRC1) ...
17-101 3.68e-10

ricin B-type lectin domain, beta-trefoil fold, found in macrophage mannose receptor 1 (MRC1) and similar proteins; MRC1, also called MMR, C-type lectin domain family 13 member D (CLEC13D), C-type lectin domain family 13 member D-like (CLEC13DL), macrophage mannose receptor 1-like protein 1 (MRC1L1), or CD206, mediates the endocytosis of glycoproteins by macrophages. It binds both sulfated and non-sulfated polysaccharide chains. MRC1 acts as phagocytic receptor for bacteria, fungi and other pathogens. It also acts as a receptor for Dengue virus envelope protein E. MRC1 contains a ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.


Pssm-ID: 467785  Cd Length: 123  Bit Score: 56.61  E-value: 3.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  17 SFMMFSSRDGLCLEDSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSAIHSD---PVRTVSCESAEQIQ-WRCK 92
Cdd:cd23407     2 SFLIYNEDHNRCVQARSSSSVTTATCNPNAESQKFRWVSGSQILSVAFKLCLGVPSKKdwvTVTLFPCNEKSELQkWECK 81

                  ....*....
gi 1897357913  93 DQQLIGLKN 101
Cdd:cd23407    82 NDTLLALKG 90
RICIN smart00458
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.
21-111 1.01e-09

Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.


Pssm-ID: 214672 [Multi-domain]  Cd Length: 118  Bit Score: 55.60  E-value: 1.01e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913   21 FSSRDGLCLE-DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSAIHS--DPVRTVSCES-AEQIQWRC-KDQQ 95
Cdd:smart00458   2 ISGNTGKCLDvNGNKNPVGLFDCHGTGGNQLWKLTSDGAIRIKDTDLCLTANGNtgSTVTLYSCDGtNDNQYWEVnKDGT 81
                           90
                   ....*....|....*.
gi 1897357913   96 LIGLKNGLVLSAERGK 111
Cdd:smart00458  82 IRNPDSGKCLDVKDGN 97
beta-trefoil_Ricin_PTPRB-like cd23409
ricin B-type lectin domain, beta-trefoil fold, found in receptor-type tyrosine-protein ...
18-126 1.34e-08

ricin B-type lectin domain, beta-trefoil fold, found in receptor-type tyrosine-protein phosphatase beta (PTPRB) isoform e and similar proteins; PTPRB (EC 3.1.3.48), also called protein-tyrosine phosphatase beta, R-PTP-beta, vascular endothelial protein tyrosine phosphatase, or VE-PTP, plays an important role in blood vessel remodeling and angiogenesis. It is not necessary for the initial formation of blood vessels but is essential for their maintenance and remodeling. It is also essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells, which requires the presence of plakoglobin. The subfamily corresponds to PTPRB isoform e, which contains an extra ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.


Pssm-ID: 467787  Cd Length: 117  Bit Score: 52.05  E-value: 1.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  18 FMMFSSRDGLCLedSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCL-----SAIHSDPVRTVSCESAEqiQWRCK 92
Cdd:cd23409     4 FLILHVQKQQCL--FGNKTVSVGKCNATSPNQQWQWTEDGKLLHVKSGQCLgisnsSAFHSRRAILLDCSQAP--RWTCH 79
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1897357913  93 DQQ-LIGLKNGLVLSAERGKITLSRAGQ---HMWRSVD 126
Cdd:cd23409    80 ENEgLLEVANSSLFLTKQGQRVVVKQGKkylHNWMKYE 117
beta-trefoil_Ricin_MRC2 cd23408
ricin B-type lectin domain, beta-trefoil fold, found in macrophage mannose receptor 2 (MRC2) ...
18-129 1.26e-07

ricin B-type lectin domain, beta-trefoil fold, found in macrophage mannose receptor 2 (MRC2) and similar proteins; MRC2, also called C-type mannose receptor 2, C-type lectin domain family 13 member E (CLEC13E), endocytic receptor 180 (Endo180), urokinase-type plasminogen activator receptor-associated protein (UPARAP), UPAR-associated protein, urokinase receptor-associated protein, or CD280, may play a role as endocytotic lectin receptor displaying calcium-dependent lectin activity. It internalizes glycosylated ligands from the extracellular space for release in an endosomal compartment via clathrin-mediated endocytosis. It may be involved in plasminogen activation system controlling the extracellular level of PLAUR/PLAU, and thus may regulate protease activity at the cell surface. It may contribute to cellular uptake, remodeling, and degradation of extracellular collagen matrices. It may play a role during cancer progression as well as in other chronic tissue destructive diseases acting on collagen turnover. It may participate in remodeling of extracellular matrix cooperating with the matrix metalloproteinases (MMPs). MRC2 contains an atypical ricin B-type lectin domain at the N-terminus. The typical ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. In contrast, the ninth, tenth and eleventh beta strands, comprising the gamma subdomain, are missing in the ricin B-type lectin domain of MRC2.


Pssm-ID: 467786  Cd Length: 124  Bit Score: 49.79  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  18 FMMFSSRDGLCLEdSSDKGLQL-KSCSLDSVLQQWMWTDQQLLMNAGSLKCL------SAIHSDPVRTVSC--ESAeQIQ 88
Cdd:cd23408     3 FLIYSDGAQGCLE-VRDSVVRLsPACNTSSPAQQWKWVSRNRLFNLGSMQCLgvsgpnGSGTSATLGTYECdrESV-NMR 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1897357913  89 WRCKDQ-----QLIGLK--NGLVLSAERGkitlSRAGQHMWRSVDTAD 129
Cdd:cd23408    81 WHCRTLgeqlsQHLGARtaNGNPSTLERG----DQARSSQWRIYGSEQ 124
beta-trefoil_Ricin_PLA2R1 cd23410
ricin B-type lectin domain, beta-trefoil fold, found in secretory phospholipase A2 receptor ...
36-129 1.42e-07

ricin B-type lectin domain, beta-trefoil fold, found in secretory phospholipase A2 receptor (PLA2R1) and similar proteins; PLA2R1, also called PLA2-R, PLA2R, 180 kDa secretory phospholipase A2 receptor, C-type lectin domain family 13 member C (CLEC13C), or M-type receptor, is a receptor for secretory phospholipase A2 (sPLA2). It acts as a receptor for phospholipase sPLA2-IB/PLA2G1B but not sPLA2-IIA/PLA2G2A. It can also bind to snake PA2-like toxins. It may be involved in responses in proinflammatory cytokine production during endotoxic shock. It also has endocytic properties and rapidly internalizes sPLA2 ligands, which is particularly important for the clearance of extracellular sPLA2s to protect their potent enzymatic activities. PLA2R1 contains a ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.


Pssm-ID: 467788  Cd Length: 118  Bit Score: 49.36  E-value: 1.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  36 GLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLS---AIHSDPVRTVSCESAEQ-IQWRCKDQQLIGLKNgLVLSAERGK 111
Cdd:cd23410    21 GLFLENCDQPSDSMLWKWVSRHRLFNLGSSMCLGlnlSYPQQPLGLFECDSTLRtLWWRCNGKMLIGADQ-YKLTAVGSK 99
                          90
                  ....*....|....*...
gi 1897357913 112 ITLSRAGQHMWRSVDTAD 129
Cdd:cd23410   100 VVASRQSSHKWKPYGSQD 117
beta-trefoil_Ricin_AH cd23415
ricin B-type lectin domain, beta-trefoil fold, found in Actinomycete actinohivin and similar ...
26-93 4.93e-07

ricin B-type lectin domain, beta-trefoil fold, found in Actinomycete actinohivin and similar proteins; Actinohivin is an actinomycete lectin with a potent specific anti-human immunodeficiency virus (anti-HIV) activity. It inhibits viral entry to cells by binding the high-mannose type sugar chains of gp120. Actinohivin contains a ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain contains a sugar-binding pocket.


Pssm-ID: 467294 [Multi-domain]  Cd Length: 120  Bit Score: 47.81  E-value: 4.93e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1897357913  26 GLCLEDSSDKGLQLKSCSlDSVLQQWMWT----DQQLLMNAGSLKCLSAIHSDPVRTVSCESAEQIQWRCKD 93
Cdd:cd23415    11 GRCLDSNAGGNVYTGPCN-GGPYQRWTWSgvgdGTVTLRNAATGRCLDSNGNGGVYTLPCNGGSYQRWRVTS 81
beta-trefoil_Ricin_LY75 cd23411
ricin B-type lectin domain, beta-trefoil fold, found in lymphocyte antigen 75 (Ly-75) and ...
26-123 6.03e-07

ricin B-type lectin domain, beta-trefoil fold, found in lymphocyte antigen 75 (Ly-75) and similar proteins; Ly-75, also called C-type lectin domain family 13 member B, DEC-205, gp200-MR6, or CD205, acts as an endocytic receptor to direct captured antigens from the extracellular space to a specialized antigen-processing compartment. It causes reduced proliferation of B-lymphocytes. Ly-75 contains a ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.


Pssm-ID: 467789  Cd Length: 116  Bit Score: 47.43  E-value: 6.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  26 GLCLEdSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCL---SAIHSDPVRTVSCESAEQIQ-WRCKDQQLIGLkN 101
Cdd:cd23411    13 GKCLK-VENSQISAVDCKQSSESLQWKWVSEHRLFNLGSKQCLgldITKPSNTLKMFECDSKSVMLwWRCEGGSLYGA-S 90
                          90       100
                  ....*....|....*....|..
gi 1897357913 102 GLVLSAERGKITLSRAGQHMWR 123
Cdd:cd23411    91 QYRLAVKNGSVTASIDSNDTWK 112
Ricin_B_lectin pfam00652
Ricin-type beta-trefoil lectin domain;
17-133 6.06e-07

Ricin-type beta-trefoil lectin domain;


Pssm-ID: 395527 [Multi-domain]  Cd Length: 126  Bit Score: 47.91  E-value: 6.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  17 SFMMFSSRDGLCLE----DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSAIHSDP---VRTVSCESA-EQIQ 88
Cdd:pfam00652   2 TGRIRNRASGKCLDvpggSSAGGPVGLYPCHGSNGNQLWTLTGDGTIRSVASDLCLDVGSTADgakVVLWPCHPGnGNQR 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1897357913  89 WRCKDQ--QLIGLKNGLVLSAERGKITLSRAgqHMWRSvDTADICQK 133
Cdd:pfam00652  82 WRYDEDgtQIRNPQSGKCLDVSGAGTSNGKV--ILWTC-DSGNPNQQ 125
beta-trefoil_Ricin_AH cd23415
ricin B-type lectin domain, beta-trefoil fold, found in Actinomycete actinohivin and similar ...
26-90 2.31e-06

ricin B-type lectin domain, beta-trefoil fold, found in Actinomycete actinohivin and similar proteins; Actinohivin is an actinomycete lectin with a potent specific anti-human immunodeficiency virus (anti-HIV) activity. It inhibits viral entry to cells by binding the high-mannose type sugar chains of gp120. Actinohivin contains a ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain contains a sugar-binding pocket.


Pssm-ID: 467294 [Multi-domain]  Cd Length: 120  Bit Score: 45.89  E-value: 2.31e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1897357913  26 GLCLEDSSDKGLQLKSCSlDSVLQQWMWT----DQQLLMNAGSLKCLSAIHSDPVRTVSCESAEQIQWR 90
Cdd:cd23415    53 GRCLDSNGNGGVYTLPCN-GGSYQRWRVTstsgGGVTLRNVATGRCLDSNGSGGVYTRPCNGGSYQRWR 120
beta-trefoil_Ricin_unchar cd23412
ricin B-type lectin domain, beta-trefoil fold, found in uncharacterized macrophage mannose ...
14-116 2.86e-06

ricin B-type lectin domain, beta-trefoil fold, found in uncharacterized macrophage mannose receptor (MRC)-like proteins; The subfamily corresponds to a group of uncharacterized ricin B-type lectin beta-trefoil domain-containing proteins from Gnathostomata. They show high sequence similarity with macrophage mannose receptor (MRC) family proteins.


Pssm-ID: 467790  Cd Length: 127  Bit Score: 45.86  E-value: 2.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  14 GTLSFMMFSSRDGLCLEDSSDKG--LQLKSCSLDSVLQQWMWT-DQQLLMNAGSLKCLSAIHSDP---VRTVSCESAEQI 87
Cdd:cd23412     1 EVQGFMIRNVQLEKCIQVDHGESerVSLAECKPHSEHQQWSWDpETRALSSLHTGECLTVLKIQEfgsVRLEPCGSREPQ 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 1897357913  88 QWRCKDQQLIGLKN-GLVLSAERG--KITLSR 116
Cdd:cd23412    81 AWSCSKKGHLTLQGlGLHLSARHSshKVFVSK 112
beta-trefoil_Ricin_Pgant3-like cd23460
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
24-90 4.67e-05

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 3 (Pgant3) and similar proteins; Pgant3, also called pp-GaNTase 3, protein-UDP acetylgalactosaminyltransferase 3, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3, functions as a GalNAc transferase (EC 2.4.1.41) that catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant3 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers EA2 as a substrate and has weak activity toward Muc5AC-3, -13 and -3/13 substrates. Pgant3 plays a critical role in the regulation of integrin-mediated cell adhesion during wing development by influencing, via glycosylation, the secretion and localization of the integrin ligand Tig to the basal cell layer interface. It may have a role in protein O-glycosylation in the Golgi and thereby in establishing and/or maintaining a proper secretory apparatus structure. Together with Pgant35A, Pgant3 regulates integrin levels and activity-dependent integrin signaling at the synapse in neurons and muscles. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467338 [Multi-domain]  Cd Length: 121  Bit Score: 42.04  E-value: 4.67e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  24 RDGLCLEDSSDKGLQLKSCSLDSVLQQWMWTDQ-QLLMNAGSLKCLSAIHSDPVRTV-SCESAEQIQ-WR 90
Cdd:cd23460    50 QDHLCLTADEGNKVTLRECADQLPSQEWSYDEKtGTIRHRSTGLCLTLDANNDVVILkECDSNSLWQkWI 119
beta-trefoil_Ricin_GALNT11 cd23440
ricin B-type lectin domain, beta-trefoil fold, found in polypeptide ...
26-107 1.46e-04

ricin B-type lectin domain, beta-trefoil fold, found in polypeptide N-acetylgalactosaminyltransferase 11 (GALNT11) and similar proteins; GALNT11 (EC 2.4.1.41), also called polypeptide GalNAc transferase 11, GalNAc-T11, pp-GaNTase 11, protein-UDP acetylgalactosaminyltransferase 11, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11, catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. It is involved in left/right asymmetry by mediating O-glycosylation of NOTCH1. O-glycosylation of NOTCH1 promotes its activation, modulating the balance between motile and immotile (sensory) cilia at the left-right organizer (LRO). GALNT11 displays the same enzyme activity toward MUC1, MUC4, and EA2 as GALNT1. It is not involved in glycosylation of erythropoietin (EPO). GALNT11 comprises a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467318 [Multi-domain]  Cd Length: 127  Bit Score: 40.82  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  26 GLCL---EDSSDKG--LQLKSCSLDSVLQQWMWTDQQLLMNAGSLkCLSAIH--SDPVRTVSC--ESAEQiQWR-CKDQQ 95
Cdd:cd23440    14 GLCLvaeDEVSQKGslLVLRPCSRNDKKQLWYYTEDGELRLANLL-CLDSSEtsSDFPRLMKChgSGGSQ-QWRfKKDNR 91
                          90
                  ....*....|..
gi 1897357913  96 LIGLKNGLVLSA 107
Cdd:cd23440    92 LYNPASGQCLAA 103
beta-trefoil_Ricin_Pgant3-like cd23460
ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide ...
26-116 2.13e-04

ricin B-type lectin domain, beta-trefoil fold, found in Drosophila melanogaster polypeptide N-acetylgalactosaminyltransferase 3 (Pgant3) and similar proteins; Pgant3, also called pp-GaNTase 3, protein-UDP acetylgalactosaminyltransferase 3, or UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3, functions as a GalNAc transferase (EC 2.4.1.41) that catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Pgant3 can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. It prefers EA2 as a substrate and has weak activity toward Muc5AC-3, -13 and -3/13 substrates. Pgant3 plays a critical role in the regulation of integrin-mediated cell adhesion during wing development by influencing, via glycosylation, the secretion and localization of the integrin ligand Tig to the basal cell layer interface. It may have a role in protein O-glycosylation in the Golgi and thereby in establishing and/or maintaining a proper secretory apparatus structure. Together with Pgant35A, Pgant3 regulates integrin levels and activity-dependent integrin signaling at the synapse in neurons and muscles. Members of this subfamily contain a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site.


Pssm-ID: 467338 [Multi-domain]  Cd Length: 121  Bit Score: 40.50  E-value: 2.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  26 GLCL----EDSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSlkCLSAIHSDPVRTVSCESAEQIQ-W--RCKDQQLIG 98
Cdd:cd23460    11 GLCLdwagESNGDKTVALKPCHGGGGNQFWMYTGDGQIRQDHL--CLTADEGNKVTLRECADQLPSQeWsyDEKTGTIRH 88
                          90       100
                  ....*....|....*....|
gi 1897357913  99 LKNG--LVLSAERGKITLSR 116
Cdd:cd23460    89 RSTGlcLTLDANNDVVILKE 108
RICIN smart00458
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.
20-89 4.05e-04

Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication.


Pssm-ID: 214672 [Multi-domain]  Cd Length: 118  Bit Score: 39.42  E-value: 4.05e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1897357913   20 MFSSRDGLCLEDSSDKG--LQLKSCSLDSVLQQWMWTDQQLLMNAGSLKCLSAIHSDPVRTV---SCESAEQIQW 89
Cdd:smart00458  41 IRIKDTDLCLTANGNTGstVTLYSCDGTNDNQYWEVNKDGTIRNPDSGKCLDVKDGNTGTKVilwTCSGNPNQKW 115
beta-trefoil_Ricin_hemolysin cd23423
ricin B-type lectin domain, beta-trefoil fold, found in bacterial hemolysin and similar ...
22-102 6.46e-04

ricin B-type lectin domain, beta-trefoil fold, found in bacterial hemolysin and similar proteins; Bacterial hemolysins are exotoxins that attack blood cell membranes and cause cytolysis by forming heptameric pores in target host membranes. After binding to target membranes, the protein assembles into a heptameric pre-pore complex. Proteolytic cleavage triggers a conformation change that is required for membrane insertion and pore formation. Hemolysin may be called "cytolysin" or "cytolytic toxin", according to a specific action for certain cells. For example, this subfamily includes Vibrio vulnificus cytolysin that attack blood cell membranes and cause cell rupture, thereby liberating hemoglobins. Members of this subfamily contain a ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a putative sugar-binding pocket.


Pssm-ID: 467301 [Multi-domain]  Cd Length: 119  Bit Score: 38.90  E-value: 6.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  22 SSRDGLCLEDSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNAGSLK-CLSAIHSDPVRTVSCESAEQIQWRCKDQQLIGLK 100
Cdd:cd23423    10 LSFNNRCLTVDNNGRVTLESCDSGDRNQSWILDSEGRYRSRVAPDlCLDADDDGLLTLEQCSLSLTQKWEWEGDRLKNRY 89

                  ..
gi 1897357913 101 NG 102
Cdd:cd23423    90 LD 91
beta-trefoil_Ricin_GALNT3-like cd23435
ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide ...
54-116 2.04e-03

ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide N-acetylgalactosaminyltransferase 3 (GALNT3)-like subfamily; The GALNT3-like subfamily includes GALNT3, GALNT4, GALNT6 and GALNT12. They act as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT3 has activity toward HIV envelope glycoprotein gp120, EA2, Muc2 and Muc5. It probably glycosylates fibronectin in vivo as well as FGF23. It plays a central role in phosphate homeostasis. GALNT4 shows highest activity towards Muc7, EA2 and Muc2, with a lower activity compared to GALNT2. It glycosylates 'Thr-57' of SELPLG. GALNT6 may participate in the synthesis of oncofetal fibronectin. It has activity toward Muc1a, Muc2, EA2 and fibronectin peptides. GALNT12 has activity toward non-glycosylated peptides such as Muc5AC, Muc1a and EA2, and no detectable activity with non-glycosylated Muc2 and Muc7. It displays enzymatic activity toward the Gal-NAc-Muc5AC glycopeptide, but no detectable activity to mono-GalNAc-glycosylated Muc1a, Muc2, Muc7 and EA2. It may play an important role in the initial step of mucin-type oligosaccharide biosynthesis in digestive organs. Members of this family comprise a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which are characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467313 [Multi-domain]  Cd Length: 128  Bit Score: 37.70  E-value: 2.04e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1897357913  54 TDQQLLMNAGSLKCLSAIHSDPVRTVSCES------AEQIQWRCKDQQLIGLKNGLVLSAERGKITLSR 116
Cdd:cd23435    47 SKGEIRHNIGKELCLHASGSDEVILQHCTSkgkdvpPEQKWLFTQDGTIRNPASGLCLHASGYKVLLRT 115
beta-trefoil_Ricin_GALNT14-like cd23441
ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide ...
27-105 7.25e-03

ricin B-type lectin domain, beta-trefoil fold, found in the polypeptide N-acetylgalactosaminyltransferase 14 (GALNT14)-like subfamily; The GALNT14-like subfamily includes GALNT14 and GALNT16. They act as GalNAc transferases (EC 2.4.1.41) that catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. GALNT14 displays activity toward mucin-derived peptide substrates such as Muc2, Muc5AC, Muc7, and Muc13 (-58). It may be involved in O-glycosylation in the kidney. Members of this subfamily comprise a glycosyltransferase region and a ricin B-type lectin domain. The glycosyltransferase region contains two conserved domains, domain A (also called GT1 motif) and domain B (also called Gal/GalNAc-T motif). This model corresponds to the ricin B-type lectin domain with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity.


Pssm-ID: 467319 [Multi-domain]  Cd Length: 122  Bit Score: 35.84  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  27 LCLE-----DSSDKGLQLKSCSLDSVLQQWMWTDQQLLMNagSLKCLSAIHSD---PVRTVSCESAEQIQWRCKDQQLIG 98
Cdd:cd23441    13 LCLDsdeqlFQGPALLILAPCSNSSDSQEWSFTKDGQLQT--QGLCLTVDSSSkdlPVVLETCSDDPKQKWTRTGRQLVH 90

                  ....*..
gi 1897357913  99 LKNGLVL 105
Cdd:cd23441    91 SESGLCL 97
beta-trefoil_Ricin_RIPs_II_rpt2 cd23444
second ricin B-type lectin domain, beta-trefoil fold, found in type II ribosome-inactivating ...
25-116 8.74e-03

second ricin B-type lectin domain, beta-trefoil fold, found in type II ribosome-inactivating proteins (RIPs); Type II ribosome-inactivating proteins (RIPs) inhibit translation in eukaryotes by irreversibly inactivating the 28S rRNA and preventing the binding of elongation factor II to the ribosome. They consist of a catalytic A-chain which has rRNA N-glycosidase activity and a lectin B-chain containing two ricin B-type lectin domains with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The lectin chain facilitates the internalization of the catalytic chain on binding to the cell surface. The two chains are connected by a disulfide bridge. This model corresponds to the second ricin B-type lectin domain. Members of this family includes Ricinus communis ricin, bitter gourd (Momordica charantia) seed lectin (BGSL), snake gourd (Trichosanthes anguina) seed lectin (SGSL), Sambucus ebulus ebulin I, Sambucus nigra nigrin b (also known as agglutinin V or SNAV), SNAI (also known as agglutinin I), SNAI' and SNAIf, Abrus precatorius abrin (ABR) and agglutinin-I (AAG), and Viscum album beta-galactoside-specific lectins 1-4 (also known as mistletoe lectins or MLs).


Pssm-ID: 467322 [Multi-domain]  Cd Length: 122  Bit Score: 35.71  E-value: 8.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897357913  25 DGLCLEDSSDKGLQLKSCSLDSVLQQW-MWTDqqllmnaGSLK-------CLSAIHSDPVRTV---SCESAEQIQWRCKD 93
Cdd:cd23444    10 NDLCLQANGGNNVWLEECVSNKKEQKWaLYPD-------GTIRpnqnrnlCLTSSSDVQGSIIvvlSCSGSSGQRWVFRN 82
                          90       100
                  ....*....|....*....|....
gi 1897357913  94 QQLIG-LKNGLVLSAERGKITLSR 116
Cdd:cd23444    83 DGTILnLYTGLVMDVKESDPSLKQ 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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