bcl-2-associated transcription factor 1 isoform 9 [Homo sapiens]
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
THRAP3_BCLAF1 super family | cl25810 | THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 ... |
329-572 | 8.10e-68 | |||||
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 (THRAP3), which is a spliceosome component and a subunit of the TRAP complex which plays a role in pre-mRNA splicing and in mRNA decay. It also includes the transcriptional repressor Bcl-2-associated transcription factor 1 (BCLAF1). The actual alignment was detected with superfamily member pfam15440: Pssm-ID: 464718 Cd Length: 641 Bit Score: 235.83 E-value: 8.10e-68
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Btz super family | cl09653 | CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility ... |
652-717 | 2.71e-03 | |||||
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide. The actual alignment was detected with superfamily member pfam09405: Pssm-ID: 447763 [Multi-domain] Cd Length: 121 Bit Score: 38.27 E-value: 2.71e-03
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Name | Accession | Description | Interval | E-value | |||||
THRAP3_BCLAF1 | pfam15440 | THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 ... |
329-572 | 8.10e-68 | |||||
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 (THRAP3), which is a spliceosome component and a subunit of the TRAP complex which plays a role in pre-mRNA splicing and in mRNA decay. It also includes the transcriptional repressor Bcl-2-associated transcription factor 1 (BCLAF1). Pssm-ID: 464718 Cd Length: 641 Bit Score: 235.83 E-value: 8.10e-68
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Btz | pfam09405 | CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility ... |
652-717 | 2.71e-03 | |||||
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide. Pssm-ID: 430588 [Multi-domain] Cd Length: 121 Bit Score: 38.27 E-value: 2.71e-03
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Name | Accession | Description | Interval | E-value | |||||
THRAP3_BCLAF1 | pfam15440 | THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 ... |
329-572 | 8.10e-68 | |||||
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 (THRAP3), which is a spliceosome component and a subunit of the TRAP complex which plays a role in pre-mRNA splicing and in mRNA decay. It also includes the transcriptional repressor Bcl-2-associated transcription factor 1 (BCLAF1). Pssm-ID: 464718 Cd Length: 641 Bit Score: 235.83 E-value: 8.10e-68
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Btz | pfam09405 | CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility ... |
652-717 | 2.71e-03 | |||||
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide. Pssm-ID: 430588 [Multi-domain] Cd Length: 121 Bit Score: 38.27 E-value: 2.71e-03
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Blast search parameters | ||||
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