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Conserved domains on  [gi|1907829254|ref|NP_001374034|]
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NEDD4-binding protein 2-like 2 isoform 12 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4639 super family cl44097
Predicted kinase [General function prediction only];
404-422 9.08e-04

Predicted kinase [General function prediction only];


The actual alignment was detected with superfamily member COG4639:

Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 39.81  E-value: 9.08e-04
                          10
                  ....*....|....*....
gi 1907829254 404 LILLRGLPGSGKTTLSRRN 422
Cdd:COG4639     4 LVVLIGLPGSGKSTFARRL 22
 
Name Accession Description Interval E-value
COG4639 COG4639
Predicted kinase [General function prediction only];
404-422 9.08e-04

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 39.81  E-value: 9.08e-04
                          10
                  ....*....|....*....
gi 1907829254 404 LILLRGLPGSGKTTLSRRN 422
Cdd:COG4639     4 LVVLIGLPGSGKSTFARRL 22
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 404-421 1.69e-03

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 38.83  E-value: 1.69e-03
                          10
                  ....*....|....*...
gi 1907829254 404 LILLRGLPGSGKTTLSRR 421
Cdd:pfam13671   1 LILLVGLPGSGKSTLARR 18
 
Name Accession Description Interval E-value
COG4639 COG4639
Predicted kinase [General function prediction only];
404-422 9.08e-04

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 39.81  E-value: 9.08e-04
                          10
                  ....*....|....*....
gi 1907829254 404 LILLRGLPGSGKTTLSRRN 422
Cdd:COG4639     4 LVVLIGLPGSGKSTFARRL 22
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
404-421 1.10e-03

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 39.90  E-value: 1.10e-03
                          10
                  ....*....|....*...
gi 1907829254 404 LILLRGLPGSGKTTLSRR 421
Cdd:COG0645     1 LILVCGLPGSGKSTLARA 18
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 404-421 1.69e-03

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 38.83  E-value: 1.69e-03
                          10
                  ....*....|....*...
gi 1907829254 404 LILLRGLPGSGKTTLSRR 421
Cdd:pfam13671   1 LILLVGLPGSGKSTLARR 18
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
 404-421 6.84e-03

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 37.78  E-value: 6.84e-03
                          10
                  ....*....|....*...
gi 1907829254 404 LILLRGLPGSGKTTLSRR 421
Cdd:COG4088     6 LLILTGPPGSGKTTFAKA 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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