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Concise Results
Standard Results
Full Results
janus kinase and microtubule-interacting protein 3 isoform q [Homo sapiens]
Protein Classification
SMC_prok_B and JAKMIP_CC3 domain-containing protein ( domain architecture ID 13531091 )
SMC_prok_B and JAKMIP_CC3 domain-containing protein
List of domain hits
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
346-542
1.82e-87
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 274.06
E-value: 1.82e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 346 ERDKL L R F RKQR K K MA K LPKP - V VVETFFGYDEEAS LE S DG SS V SY Q TDRTD Q TP C TPD D DL E EG M A K EE T ELRFRQLT M 424
Cdd:pfam16034 1 ERDKL I R A RKQR R K EK K KKLR d M VVETFFGYDEEAS VD S ET SS L SY N TDRTD S TP A TPD E DL D EG V A A EE A ELRFRQLT R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 425 EYQALQRAYALLQEQ V GGTLDAERE V KTREQLQAE VQ RAQ A RIEDLE K ALA EQ GQD M KW I EEKQAL Y RRNQELVEKI KQ M 504
Cdd:pfam16034 81 EYQALQRAYALLQEQ S GGTLDAERE A KTREQLQAE LR RAQ S RIEDLE S ALA QK GQD S KW V EEKQAL I RRNQELVEKI RI M 160
170 180 190
....*....|....*....|....*....|....*...
gi 1972711282 505 E T EE A RL RH E V QDARDQNELLEFRILELEERER K SPAI 542
Cdd:pfam16034 161 E Q EE G RL KN E I QDARDQNELLEFRILELEERER R SPAI 198
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
412-738
2.95e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 57.25
E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 412 K E ET EL RFRQ L TMEYQA L QRAYAL L QEQVG - GTLDA E REVKTREQ L Q AE VQRAQARI E D LE KA L A E - Q GQDMKWIE E KQA 489
Cdd:COG1196 220 E E LK EL EAEL L LLKLRE L EAELEE L EAELE e LEAEL E ELEAELAE L E AE LEELRLEL E E LE LE L E E a Q AEEYELLA E LAR 299
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 490 L YRRNQE L V E KIKQM E TEEAR L RH E VQDARDQN E L LE FRIL ELEE RE rkspaisfhhtpfvdgksplqvyceaegvtdiv 569
Cdd:COG1196 300 L EQDIAR L E E RRREL E ERLEE L EE E LAELEEEL E E LE EELE ELEE EL --------------------------------- 346
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 570 v A E LMKK L D ilgdnanltn E EQVVVIQ A RTV L TL AE KW L QQI EE TEAA L QRKMVDLESEKELFSK Q KGY L D E ELDYRKQA 649
Cdd:COG1196 347 - E E AEEE L E ---------- E AEAELAE A EEA L LE AE AE L AEA EE ELEE L AEELLEALRAAAELAA Q LEE L E E AEEALLER 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 650 L DQANKHIL ELE AM L YDALQQ E AGAKV A ELLSE EE REK L KVAV E Q w KRQVMS EL R E RD A QILRERM ELL QLAQQRIKE L E 729
Cdd:COG1196 416 L ERLEEELE ELE EA L AELEEE E EEEEE A LEEAA EE EAE L EEEE E A - LLELLA EL L E EA A LLEAALA ELL EELAEAAAR L L 494
....*....
gi 1972711282 730 ERI EA QKRQ 738
Cdd:COG1196 495 LLL EA EADY 503
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
55-536
1.44e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 48.78
E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 55 E AK E EAKKGF E V E KVKMQQ E IS EL KGAKRQV E EA L TLVIQADKIKA AE IRSVYHLHQEEIT R IKKE c E REIRR L M EE IKF 134
Cdd:COG1196 249 E EL E AELEEL E A E LAELEA E LE EL RLELEEL E LE L EEAQAEEYELL AE LARLEQDIARLEE R RREL - E ERLEE L E EE LAE 327
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 135 KDRAVFV LE R EL GVQAGHAQRLQLQK E ALDEQ L SQVR EA drhpgsp RR E LPHAAGAGDASDHSGSP E QQLDEKD A RRFQL 214
Cdd:COG1196 328 LEEELEE LE E EL EELEEELEEAEEEL E EAEAE L AEAE EA ------- LL E AEAELAEAEEELEELAE E LLEALRA A AELAA 400
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 215 KIA EL SAIIRK L ED R NAL L S EE RN EL LKRVR E A E SQYKPLLDKNKRLSRKNED L SHALRRMENK L KFVTQ E NIEMRQRAG 294
Cdd:COG1196 401 QLE EL EEAEEA L LE R LER L E EE LE EL EEALA E L E EEEEEEEEALEEAAEEEAE L EEEEEALLEL L AELLE E AALLEAALA 480
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 295 IIRRP -------- SS L NDLDQSQDEREVDFLKLQIVEQQNLI ----------- DELSKT LE T A ------- GY V KSVLERD 348
Cdd:COG1196 481 ELLEE laeaaarl LL L LEAEADYEGFLEGVKAALLLAGLRGL agavavligve AAYEAA LE A A laaalqn IV V EDDEVAA 560
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 349 KLLRFR K QR K -- KMAK LP KPVVVETFFGYDEE A SLESDGSSVSYQT D RTDQTPCTPDDDLEEGMAKEETELRFRQ L TMEY 426
Cdd:COG1196 561 AAIEYL K AA K ag RATF LP LDKIRARAALAAAL A RGAIGAAVDLVAS D LREADARYYVLGDTLLGRTLVAARLEAA L RRAV 640
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 427 QALQ R AYALLQ E QV GG TLDAEREVKT R EQ L Q A EVQR A Q A RI E D L EKA LAE Q gqdmkw IE E KQALYRRNQ E LVEKIKQM E T 506
Cdd:COG1196 641 TLAG R LREVTL E GE GG SAGGSLTGGS R RE L L A ALLE A E A EL E E L AER LAE E ------ EL E LEEALLAEE E EERELAEA E E 714
490 500 510
....*....|....*....|....*....|
gi 1972711282 507 E EARLRH E VQDARD Q N E LLEFRI LE LEER E 536
Cdd:COG1196 715 E RLEEEL E EEALEE Q L E AEREEL LE ELLE E 744
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
346-542
1.82e-87
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 274.06
E-value: 1.82e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 346 ERDKL L R F RKQR K K MA K LPKP - V VVETFFGYDEEAS LE S DG SS V SY Q TDRTD Q TP C TPD D DL E EG M A K EE T ELRFRQLT M 424
Cdd:pfam16034 1 ERDKL I R A RKQR R K EK K KKLR d M VVETFFGYDEEAS VD S ET SS L SY N TDRTD S TP A TPD E DL D EG V A A EE A ELRFRQLT R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 425 EYQALQRAYALLQEQ V GGTLDAERE V KTREQLQAE VQ RAQ A RIEDLE K ALA EQ GQD M KW I EEKQAL Y RRNQELVEKI KQ M 504
Cdd:pfam16034 81 EYQALQRAYALLQEQ S GGTLDAERE A KTREQLQAE LR RAQ S RIEDLE S ALA QK GQD S KW V EEKQAL I RRNQELVEKI RI M 160
170 180 190
....*....|....*....|....*....|....*...
gi 1972711282 505 E T EE A RL RH E V QDARDQNELLEFRILELEERER K SPAI 542
Cdd:pfam16034 161 E Q EE G RL KN E I QDARDQNELLEFRILELEERER R SPAI 198
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
412-738
2.95e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 57.25
E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 412 K E ET EL RFRQ L TMEYQA L QRAYAL L QEQVG - GTLDA E REVKTREQ L Q AE VQRAQARI E D LE KA L A E - Q GQDMKWIE E KQA 489
Cdd:COG1196 220 E E LK EL EAEL L LLKLRE L EAELEE L EAELE e LEAEL E ELEAELAE L E AE LEELRLEL E E LE LE L E E a Q AEEYELLA E LAR 299
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 490 L YRRNQE L V E KIKQM E TEEAR L RH E VQDARDQN E L LE FRIL ELEE RE rkspaisfhhtpfvdgksplqvyceaegvtdiv 569
Cdd:COG1196 300 L EQDIAR L E E RRREL E ERLEE L EE E LAELEEEL E E LE EELE ELEE EL --------------------------------- 346
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 570 v A E LMKK L D ilgdnanltn E EQVVVIQ A RTV L TL AE KW L QQI EE TEAA L QRKMVDLESEKELFSK Q KGY L D E ELDYRKQA 649
Cdd:COG1196 347 - E E AEEE L E ---------- E AEAELAE A EEA L LE AE AE L AEA EE ELEE L AEELLEALRAAAELAA Q LEE L E E AEEALLER 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 650 L DQANKHIL ELE AM L YDALQQ E AGAKV A ELLSE EE REK L KVAV E Q w KRQVMS EL R E RD A QILRERM ELL QLAQQRIKE L E 729
Cdd:COG1196 416 L ERLEEELE ELE EA L AELEEE E EEEEE A LEEAA EE EAE L EEEE E A - LLELLA EL L E EA A LLEAALA ELL EELAEAAAR L L 494
....*....
gi 1972711282 730 ERI EA QKRQ 738
Cdd:COG1196 495 LLL EA EADY 503
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
55-734
7.25e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 53.14
E-value: 7.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 55 E AKE E AKKGFEV E KVKMQQ E IS EL KGAKRQV EE A L T --- L VIQADKIKAA E IRSVYHLHQE EI trik KEC E REIRR L M E E 131
Cdd:TIGR02168 235 E ELR E ELEELQE E LKEAEE E LE EL TAELQEL EE K L E elr L EVSELEEEIE E LQKELYALAN EI ---- SRL E QQKQI L R E R 310
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 132 IKFKD R AVFV LE RE L GVQAGHAQR L QLQKEA L D E Q L SQVR E ad RHPGSPRRELPHA A GAGDASDHSGSP E Q QL DEKDARR 211
Cdd:TIGR02168 311 LANLE R QLEE LE AQ L EELESKLDE L AEELAE L E E K L EELK E -- ELESLEAELEELE A ELEELESRLEEL E E QL ETLRSKV 388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 212 F QL K --------- I AE L S A IIRK LEDR NAL L SE E RN ELLK RVR EAE sq Y K P L LDKNKR L SRKN E D L SHA L R R M E NK L KFV 282
Cdd:TIGR02168 389 A QL E lqiaslnne I ER L E A RLER LEDR RER L QQ E IE ELLK KLE EAE -- L K E L QAELEE L EEEL E E L QEE L E R L E EA L EEL 466
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 283 TQ E ---- NIEMRQRAGIIRRPSSLN D LDQSQD E REVD F LK -- LQIVEQ Q NLID -------------- ELSKTL E T A G --- 339
Cdd:TIGR02168 467 RE E leea EQALDAAERELAQLQARL D SLERLQ E NLEG F SE gv KALLKN Q SGLS gilgvlselisvde GYEAAI E A A L ggr 546
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 340 ---- Y V KSVLERD K LLR F R KQ RK -- KMAK LP KPVVVE T FFGYDEEAS L ESDGSSVSYQT D RTDQT P ------------ CT 401
Cdd:TIGR02168 547 lqav V V ENLNAAK K AIA F L KQ NE lg RVTF LP LDSIKG T EIQGNDREI L KNIEGFLGVAK D LVKFD P klrkalsyllgg VL 626
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 402 PD DDL EEGMA - KEETELRF R QL T MEYQALQRAYALLQ --- EQVGGT L DAE RE V ktr E Q L QAEVQRAQAR I ED LEKALAE - 476
Cdd:TIGR02168 627 VV DDL DNALE l AKKLRPGY R IV T LDGDLVRPGGVITG gsa KTNSSI L ERR RE I --- E E L EEKIEELEEK I AE LEKALAE l 703
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 477 -- QGQDMK wi EE KQA L YRRNQ EL VEK I KQMETEE ARL RH EV QDARDQNEL L EFRIL ELE ERERK -------- SPAISFHH 546
Cdd:TIGR02168 704 rk ELEELE -- EE LEQ L RKELE EL SRQ I SALRKDL ARL EA EV EQLEERIAQ L SKELT ELE AEIEE leerleea EEELAEAE 781
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 547 TPFVDGKSPLQVYC E AEGVTDIVVA EL MKK L DI L GDN A - NL TNEEQVVVIQARTVLTLA E KWLQ QIEE TE ---------- 615
Cdd:TIGR02168 782 AEIEELEAQIEQLK E ELKALREALD EL RAE L TL L NEE A a NL RERLESLERRIAATERRL E DLEE QIEE LS edieslaaei 861
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 616 AA L QRKMVD LESE K E LFSKQKGY L D E E L DYRKQA L DQANKHIL ELE AMLYDALQ -- Q E AGA K V A E L ls E EER E K L K V AVE 693
Cdd:TIGR02168 862 EE L EELIEE LESE L E ALLNERAS L E E A L ALLRSE L EELSEELR ELE SKRSELRR el E E LRE K L A Q L -- E LRL E G L E V RID 939
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1972711282 694 QWKRQVMS E LR --- E RDAQILRERMELLQL A QQ R I K E LE ER I EA 734
Cdd:TIGR02168 940 NLQERLSE E YS ltl E EAEALENKIEDDEEE A RR R L K R LE NK I KE 983
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
55-536
1.44e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 48.78
E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 55 E AK E EAKKGF E V E KVKMQQ E IS EL KGAKRQV E EA L TLVIQADKIKA AE IRSVYHLHQEEIT R IKKE c E REIRR L M EE IKF 134
Cdd:COG1196 249 E EL E AELEEL E A E LAELEA E LE EL RLELEEL E LE L EEAQAEEYELL AE LARLEQDIARLEE R RREL - E ERLEE L E EE LAE 327
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 135 KDRAVFV LE R EL GVQAGHAQRLQLQK E ALDEQ L SQVR EA drhpgsp RR E LPHAAGAGDASDHSGSP E QQLDEKD A RRFQL 214
Cdd:COG1196 328 LEEELEE LE E EL EELEEELEEAEEEL E EAEAE L AEAE EA ------- LL E AEAELAEAEEELEELAE E LLEALRA A AELAA 400
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 215 KIA EL SAIIRK L ED R NAL L S EE RN EL LKRVR E A E SQYKPLLDKNKRLSRKNED L SHALRRMENK L KFVTQ E NIEMRQRAG 294
Cdd:COG1196 401 QLE EL EEAEEA L LE R LER L E EE LE EL EEALA E L E EEEEEEEEALEEAAEEEAE L EEEEEALLEL L AELLE E AALLEAALA 480
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 295 IIRRP -------- SS L NDLDQSQDEREVDFLKLQIVEQQNLI ----------- DELSKT LE T A ------- GY V KSVLERD 348
Cdd:COG1196 481 ELLEE laeaaarl LL L LEAEADYEGFLEGVKAALLLAGLRGL agavavligve AAYEAA LE A A laaalqn IV V EDDEVAA 560
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 349 KLLRFR K QR K -- KMAK LP KPVVVETFFGYDEE A SLESDGSSVSYQT D RTDQTPCTPDDDLEEGMAKEETELRFRQ L TMEY 426
Cdd:COG1196 561 AAIEYL K AA K ag RATF LP LDKIRARAALAAAL A RGAIGAAVDLVAS D LREADARYYVLGDTLLGRTLVAARLEAA L RRAV 640
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 427 QALQ R AYALLQ E QV GG TLDAEREVKT R EQ L Q A EVQR A Q A RI E D L EKA LAE Q gqdmkw IE E KQALYRRNQ E LVEKIKQM E T 506
Cdd:COG1196 641 TLAG R LREVTL E GE GG SAGGSLTGGS R RE L L A ALLE A E A EL E E L AER LAE E ------ EL E LEEALLAEE E EERELAEA E E 714
490 500 510
....*....|....*....|....*....|
gi 1972711282 507 E EARLRH E VQDARD Q N E LLEFRI LE LEER E 536
Cdd:COG1196 715 E RLEEEL E EEALEE Q L E AEREEL LE ELLE E 744
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
2-740
8.00e-05
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 46.21
E-value: 8.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 2 KE LQAVRETL L RQHEAE L L R VIKIKDNENQR L QAL L SA L RDGGP E KV K TV ----- LL S E AKEEA K KGF E V E KVKMQQE I S 76
Cdd:TIGR02169 218 KE KREYEGYE L LKEKEA L E R QKEAIERQLAS L EEE L EK L TEEIS E LE K RL eeieq LL E E LNKKI K DLG E E E QLRVKEK I G 297
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 77 EL KG ---- AK R QVE E ALTLVIQ A DK i KA A EIRSVYHLHQE EI TRIKK E C E R E IR R --- L M EE IKFKDRAVFV L ER EL GVQ 149
Cdd:TIGR02169 298 EL EA eias LE R SIA E KERELED A EE - RL A KLEAEIDKLLA EI EELER E I E E E RK R rdk L T EE YAELKEELED L RA EL EEV 376
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 150 AGHAQRLQLQKEALD E Q L SQVRE adrhpgsprrelphaagag DASDHSGSPEQQLD E K da R R FQLKI A E L S A I I RKL E DR 229
Cdd:TIGR02169 377 DKEFAETRDELKDYR E K L EKLKR ------------------- EINELKRELDRLQE E L -- Q R LSEEL A D L N A A I AGI E AK 435
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 230 NAL L S EE RNELLKRVREA E SQYKP L LDKNKRLSRKNE DL SHALR R M E NK L KFVTQ E NI E MRQR A GIIRRPSSLNDLDQSQ 309
Cdd:TIGR02169 436 INE L E EE KEDKALEIKKQ E WKLEQ L AADLSKYEQELY DL KEEYD R V E KE L SKLQR E LA E AEAQ A RASEERVRGGRAVEEV 515
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 310 DEREVDFLKLQIVEQQNLIDELSKTL E T A G ------- Y V KSVLERDKLLRFR K Q RK ---------- KM AKLPKPVVVETF 372
Cdd:TIGR02169 516 LKASIQGVHGTVAQLGSVGERYATAI E V A A gnrlnnv V V EDDAVAKEAIELL K R RK agratflpln KM RDERRDLSILSE 595
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 373 F G YDEE A S -- L E S D --- GSSVS Y QTDR T DQT pctpd D D L E EG mak EETELRF R QL T M E YQALQRAY A L lqeq V GG TLDAE 447
Cdd:TIGR02169 596 D G VIGF A V dl V E F D pky EPAFK Y VFGD T LVV ----- E D I E AA --- RRLMGKY R MV T L E GELFEKSG A M ---- T GG SRAPR 663
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 448 REVKTREQLQ AE V QR AQA R I E D L EKA L AEQGQDMKW IE ek QA L YRRN QEL VEKIKQMETE E ARLRHEV Q DARDQN E L LE F 527
Cdd:TIGR02169 664 GGILFSRSEP AE L QR LRE R L E G L KRE L SSLQSELRR IE -- NR L DELS QEL SDASRKIGEI E KEIEQLE Q EEEKLK E R LE E 741
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 528 RILE L EER E RKSPAI sfhhtpfvdg KS P L Q vyc E A E GVTDIVVAE L M K KLDI L G D NANLTNEEQVVV IQA R tv L TLA E KW 607
Cdd:TIGR02169 742 LEED L SSL E QEIENV ---------- KS E L K --- E L E ARIEELEED L H K LEEA L N D LEARLSHSRIPE IQA E -- L SKL E EE 806
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 608 LQQ IE ETEAALQR K MVD L ES EKE LFS K QKGY L D E ELDYR K QALDQAN K H I LE L EAMLYDALQQEAGAKV A ELLS E EEREK 687
Cdd:TIGR02169 807 VSR IE ARLREIEQ K LNR L TL EKE YLE K EIQE L Q E QRIDL K EQIKSIE K E I EN L NGKKEELEEELEELEA A LRDL E SRLGD 886
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1972711282 688 LK VAVEQWKR Q v MS EL RER daqi LR E RMELLQLAQQ R IK EL EERI EA QKRQIK 740
Cdd:TIGR02169 887 LK KERDELEA Q - LR EL ERK ---- IE E LEAQIEKKRK R LS EL KAKL EA LEEELS 934
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
412-736
9.91e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 42.74
E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 412 K E ET EL RFRQ L TMEYQA L QRAYAL LQE QV ggtlda EREVKTR E Q L Q AE V Q RAQARI E D L EKALA E QG qdmkwi EE KQA L Y 491
Cdd:TIGR02168 220 A E LR EL ELAL L VLRLEE L REELEE LQE EL ------ KEAEEEL E E L T AE L Q ELEEKL E E L RLEVS E LE ------ EE IEE L Q 287
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 492 RRNQE L VEK I KQM E TEEAR LR HEVQDARD Q N E L LE FRIL ELE ERERKSPAIS fhh TPFVDGKSP L QVYC E AE gvtdiv V A 571
Cdd:TIGR02168 288 KELYA L ANE I SRL E QQKQI LR ERLANLER Q L E E LE AQLE ELE SKLDELAEEL --- AELEEKLEE L KEEL E SL ------ E A 358
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 572 EL MKKLDI L GDNANLTN E EQVVVIQA R TVLTLA E kwl Q QI EETEAALQ R kmvd LE SEK E LFSKQKGY L DE E LDYRKQA L D 651
Cdd:TIGR02168 359 EL EELEAE L EELESRLE E LEEQLETL R SKVAQL E --- L QI ASLNNEIE R ---- LE ARL E RLEDRRER L QQ E IEELLKK L E 431
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 652 Q A NKHI L EL E AMLYDALQQ E AGAKVAE L LSEE E REKLKVAVEQWKRQ vmse LR ER DAQI L RE R MEL L QLA Q QRIKELE E R 731
Cdd:TIGR02168 432 E A ELKE L QA E LEELEEELE E LQEELER L EEAL E ELREELEEAEQALD ---- AA ER ELAQ L QA R LDS L ERL Q ENLEGFS E G 507
....*
gi 1972711282 732 IE A QK 736
Cdd:TIGR02168 508 VK A LL 512
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
413-537
2.55e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 41.44
E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 413 E E T E LRFRQLTMEYQ AL QRAYAL LQE Q vggt LD A EREVKTREQLQAE V QR A QAR I ED LE KA L AEQGQDMKWI ---- E EKQ 488
Cdd:COG4913 620 A E L E EELAEAEERLE AL EAELDA LQE R ---- RE A LQRLAEYSWDEID V AS A ERE I AE LE AE L ERLDASSDDL aale E QLE 695
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1972711282 489 A L YRRNQ EL V E KIKQMET E EA RL RH E VQD A RDQNEL L EF R ILEL E ERE R 537
Cdd:COG4913 696 E L EAELE EL E E ELDELKG E IG RL EK E LEQ A EEELDE L QD R LEAA E DLA R 744
Name
Accession
Description
Interval
E-value
JAKMIP_CC3
pfam16034 JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ...
346-542
1.82e-87
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain]
Cd Length: 199
Bit Score: 274.06
E-value: 1.82e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 346 ERDKL L R F RKQR K K MA K LPKP - V VVETFFGYDEEAS LE S DG SS V SY Q TDRTD Q TP C TPD D DL E EG M A K EE T ELRFRQLT M 424
Cdd:pfam16034 1 ERDKL I R A RKQR R K EK K KKLR d M VVETFFGYDEEAS VD S ET SS L SY N TDRTD S TP A TPD E DL D EG V A A EE A ELRFRQLT R 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 425 EYQALQRAYALLQEQ V GGTLDAERE V KTREQLQAE VQ RAQ A RIEDLE K ALA EQ GQD M KW I EEKQAL Y RRNQELVEKI KQ M 504
Cdd:pfam16034 81 EYQALQRAYALLQEQ S GGTLDAERE A KTREQLQAE LR RAQ S RIEDLE S ALA QK GQD S KW V EEKQAL I RRNQELVEKI RI M 160
170 180 190
....*....|....*....|....*....|....*...
gi 1972711282 505 E T EE A RL RH E V QDARDQNELLEFRILELEERER K SPAI 542
Cdd:pfam16034 161 E Q EE G RL KN E I QDARDQNELLEFRILELEERER R SPAI 198
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
412-738
2.95e-08
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 57.25
E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 412 K E ET EL RFRQ L TMEYQA L QRAYAL L QEQVG - GTLDA E REVKTREQ L Q AE VQRAQARI E D LE KA L A E - Q GQDMKWIE E KQA 489
Cdd:COG1196 220 E E LK EL EAEL L LLKLRE L EAELEE L EAELE e LEAEL E ELEAELAE L E AE LEELRLEL E E LE LE L E E a Q AEEYELLA E LAR 299
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 490 L YRRNQE L V E KIKQM E TEEAR L RH E VQDARDQN E L LE FRIL ELEE RE rkspaisfhhtpfvdgksplqvyceaegvtdiv 569
Cdd:COG1196 300 L EQDIAR L E E RRREL E ERLEE L EE E LAELEEEL E E LE EELE ELEE EL --------------------------------- 346
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 570 v A E LMKK L D ilgdnanltn E EQVVVIQ A RTV L TL AE KW L QQI EE TEAA L QRKMVDLESEKELFSK Q KGY L D E ELDYRKQA 649
Cdd:COG1196 347 - E E AEEE L E ---------- E AEAELAE A EEA L LE AE AE L AEA EE ELEE L AEELLEALRAAAELAA Q LEE L E E AEEALLER 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 650 L DQANKHIL ELE AM L YDALQQ E AGAKV A ELLSE EE REK L KVAV E Q w KRQVMS EL R E RD A QILRERM ELL QLAQQRIKE L E 729
Cdd:COG1196 416 L ERLEEELE ELE EA L AELEEE E EEEEE A LEEAA EE EAE L EEEE E A - LLELLA EL L E EA A LLEAALA ELL EELAEAAAR L L 494
....*....
gi 1972711282 730 ERI EA QKRQ 738
Cdd:COG1196 495 LLL EA EADY 503
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
55-734
7.25e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 53.14
E-value: 7.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 55 E AKE E AKKGFEV E KVKMQQ E IS EL KGAKRQV EE A L T --- L VIQADKIKAA E IRSVYHLHQE EI trik KEC E REIRR L M E E 131
Cdd:TIGR02168 235 E ELR E ELEELQE E LKEAEE E LE EL TAELQEL EE K L E elr L EVSELEEEIE E LQKELYALAN EI ---- SRL E QQKQI L R E R 310
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 132 IKFKD R AVFV LE RE L GVQAGHAQR L QLQKEA L D E Q L SQVR E ad RHPGSPRRELPHA A GAGDASDHSGSP E Q QL DEKDARR 211
Cdd:TIGR02168 311 LANLE R QLEE LE AQ L EELESKLDE L AEELAE L E E K L EELK E -- ELESLEAELEELE A ELEELESRLEEL E E QL ETLRSKV 388
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 212 F QL K --------- I AE L S A IIRK LEDR NAL L SE E RN ELLK RVR EAE sq Y K P L LDKNKR L SRKN E D L SHA L R R M E NK L KFV 282
Cdd:TIGR02168 389 A QL E lqiaslnne I ER L E A RLER LEDR RER L QQ E IE ELLK KLE EAE -- L K E L QAELEE L EEEL E E L QEE L E R L E EA L EEL 466
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 283 TQ E ---- NIEMRQRAGIIRRPSSLN D LDQSQD E REVD F LK -- LQIVEQ Q NLID -------------- ELSKTL E T A G --- 339
Cdd:TIGR02168 467 RE E leea EQALDAAERELAQLQARL D SLERLQ E NLEG F SE gv KALLKN Q SGLS gilgvlselisvde GYEAAI E A A L ggr 546
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 340 ---- Y V KSVLERD K LLR F R KQ RK -- KMAK LP KPVVVE T FFGYDEEAS L ESDGSSVSYQT D RTDQT P ------------ CT 401
Cdd:TIGR02168 547 lqav V V ENLNAAK K AIA F L KQ NE lg RVTF LP LDSIKG T EIQGNDREI L KNIEGFLGVAK D LVKFD P klrkalsyllgg VL 626
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 402 PD DDL EEGMA - KEETELRF R QL T MEYQALQRAYALLQ --- EQVGGT L DAE RE V ktr E Q L QAEVQRAQAR I ED LEKALAE - 476
Cdd:TIGR02168 627 VV DDL DNALE l AKKLRPGY R IV T LDGDLVRPGGVITG gsa KTNSSI L ERR RE I --- E E L EEKIEELEEK I AE LEKALAE l 703
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 477 -- QGQDMK wi EE KQA L YRRNQ EL VEK I KQMETEE ARL RH EV QDARDQNEL L EFRIL ELE ERERK -------- SPAISFHH 546
Cdd:TIGR02168 704 rk ELEELE -- EE LEQ L RKELE EL SRQ I SALRKDL ARL EA EV EQLEERIAQ L SKELT ELE AEIEE leerleea EEELAEAE 781
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 547 TPFVDGKSPLQVYC E AEGVTDIVVA EL MKK L DI L GDN A - NL TNEEQVVVIQARTVLTLA E KWLQ QIEE TE ---------- 615
Cdd:TIGR02168 782 AEIEELEAQIEQLK E ELKALREALD EL RAE L TL L NEE A a NL RERLESLERRIAATERRL E DLEE QIEE LS edieslaaei 861
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 616 AA L QRKMVD LESE K E LFSKQKGY L D E E L DYRKQA L DQANKHIL ELE AMLYDALQ -- Q E AGA K V A E L ls E EER E K L K V AVE 693
Cdd:TIGR02168 862 EE L EELIEE LESE L E ALLNERAS L E E A L ALLRSE L EELSEELR ELE SKRSELRR el E E LRE K L A Q L -- E LRL E G L E V RID 939
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1972711282 694 QWKRQVMS E LR --- E RDAQILRERMELLQL A QQ R I K E LE ER I EA 734
Cdd:TIGR02168 940 NLQERLSE E YS ltl E EAEALENKIEDDEEE A RR R L K R LE NK I KE 983
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
67-735
4.56e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 50.44
E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 67 E KVKMQQEIS EL KGAKRQV EE altlviqadki KAA E IRSVYHLHQE EI trik KEC E REIRR L M E EIKFKD R AVFV LE RE L 146
Cdd:TIGR02168 261 E LQELEEKLE EL RLEVSEL EE ----------- EIE E LQKELYALAN EI ---- SRL E QQKQI L R E RLANLE R QLEE LE AQ L 325
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 147 GVQAGHAQR L QLQKEA L D E Q L SQVR E ad RHPGSPRRELPHA A GAGDASDHSGSP E Q QL DEKDARRF QL K --------- I A 217
Cdd:TIGR02168 326 EELESKLDE L AEELAE L E E K L EELK E -- ELESLEAELEELE A ELEELESRLEEL E E QL ETLRSKVA QL E lqiaslnne I E 403
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 218 E L S A IIRK LEDR NAL L SE E RN ELLK RVR EAE sq Y K P L LDKNKR L SRKN E D L SHA L R R M E NK L KFVTQ E ---- NIEMRQRA 293
Cdd:TIGR02168 404 R L E A RLER LEDR RER L QQ E IE ELLK KLE EAE -- L K E L QAELEE L EEEL E E L QEE L E R L E EA L EELRE E leea EQALDAAE 481
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 294 GIIRRPSSLN D LDQSQD E REVD F LK -- LQIVEQ Q NLID -------------- ELSKTL E T A G ------- Y V KSVLERD K L 350
Cdd:TIGR02168 482 RELAQLQARL D SLERLQ E NLEG F SE gv KALLKN Q SGLS gilgvlselisvde GYEAAI E A A L ggrlqav V V ENLNAAK K A 561
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 351 LR F R KQ RK -- KMAK LP KPVVVE T FFGYDEEAS L ESDGSSVSYQT D RTDQT P ------------ CTPD DDL EEGMA - KEET 415
Cdd:TIGR02168 562 IA F L KQ NE lg RVTF LP LDSIKG T EIQGNDREI L KNIEGFLGVAK D LVKFD P klrkalsyllgg VLVV DDL DNALE l AKKL 641
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 416 ELRF R QL T MEYQALQRAYALLQ --- EQVGGT L DAE RE V ktr E Q L QAEVQRAQAR I ED LEKALAE --- QGQDMK wi EE KQA 489
Cdd:TIGR02168 642 RPGY R IV T LDGDLVRPGGVITG gsa KTNSSI L ERR RE I --- E E L EEKIEELEEK I AE LEKALAE lrk ELEELE -- EE LEQ 716
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 490 L YRRNQ EL VEK I KQMETEE ARL RH EV QDARDQNEL L EFRIL ELE ERERKS paisfhhtpfvdg KSP L QVYC E AEGVTDIV 569
Cdd:TIGR02168 717 L RKELE EL SRQ I SALRKDL ARL EA EV EQLEERIAQ L SKELT ELE AEIEEL ------------- EER L EEAE E ELAEAEAE 783
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 570 VA EL MKKLDI L GDNANLTN E EQV vvi QA R TV LTL AEKWLQQIE E TEAA L Q R KMVDL E SEK E LFSK Q KGY L D E ELDYRKQA 649
Cdd:TIGR02168 784 IE EL EAQIEQ L KEELKALR E ALD --- EL R AE LTL LNEEAANLR E RLES L E R RIAAT E RRL E DLEE Q IEE L S E DIESLAAE 860
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 650 LDQANKH I L ELE AM L YDA L QQE A GAKV A EL L SEE E R E K L KVAVEQWKRQVMSEL RE RDA qi LRE RMEL L Q L AQQRIKELE 729
Cdd:TIGR02168 861 IEELEEL I E ELE SE L EAL L NER A SLEE A LA L LRS E L E E L SEELRELESKRSELR RE LEE -- LRE KLAQ L E L RLEGLEVRI 938
....*.
gi 1972711282 730 ERIEAQ 735
Cdd:TIGR02168 939 DNLQER 944
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
55-536
1.44e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 48.78
E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 55 E AK E EAKKGF E V E KVKMQQ E IS EL KGAKRQV E EA L TLVIQADKIKA AE IRSVYHLHQEEIT R IKKE c E REIRR L M EE IKF 134
Cdd:COG1196 249 E EL E AELEEL E A E LAELEA E LE EL RLELEEL E LE L EEAQAEEYELL AE LARLEQDIARLEE R RREL - E ERLEE L E EE LAE 327
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 135 KDRAVFV LE R EL GVQAGHAQRLQLQK E ALDEQ L SQVR EA drhpgsp RR E LPHAAGAGDASDHSGSP E QQLDEKD A RRFQL 214
Cdd:COG1196 328 LEEELEE LE E EL EELEEELEEAEEEL E EAEAE L AEAE EA ------- LL E AEAELAEAEEELEELAE E LLEALRA A AELAA 400
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 215 KIA EL SAIIRK L ED R NAL L S EE RN EL LKRVR E A E SQYKPLLDKNKRLSRKNED L SHALRRMENK L KFVTQ E NIEMRQRAG 294
Cdd:COG1196 401 QLE EL EEAEEA L LE R LER L E EE LE EL EEALA E L E EEEEEEEEALEEAAEEEAE L EEEEEALLEL L AELLE E AALLEAALA 480
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 295 IIRRP -------- SS L NDLDQSQDEREVDFLKLQIVEQQNLI ----------- DELSKT LE T A ------- GY V KSVLERD 348
Cdd:COG1196 481 ELLEE laeaaarl LL L LEAEADYEGFLEGVKAALLLAGLRGL agavavligve AAYEAA LE A A laaalqn IV V EDDEVAA 560
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 349 KLLRFR K QR K -- KMAK LP KPVVVETFFGYDEE A SLESDGSSVSYQT D RTDQTPCTPDDDLEEGMAKEETELRFRQ L TMEY 426
Cdd:COG1196 561 AAIEYL K AA K ag RATF LP LDKIRARAALAAAL A RGAIGAAVDLVAS D LREADARYYVLGDTLLGRTLVAARLEAA L RRAV 640
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 427 QALQ R AYALLQ E QV GG TLDAEREVKT R EQ L Q A EVQR A Q A RI E D L EKA LAE Q gqdmkw IE E KQALYRRNQ E LVEKIKQM E T 506
Cdd:COG1196 641 TLAG R LREVTL E GE GG SAGGSLTGGS R RE L L A ALLE A E A EL E E L AER LAE E ------ EL E LEEALLAEE E EERELAEA E E 714
490 500 510
....*....|....*....|....*....|
gi 1972711282 507 E EARLRH E VQDARD Q N E LLEFRI LE LEER E 536
Cdd:COG1196 715 E RLEEEL E EEALEE Q L E AEREEL LE ELLE E 744
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
411-738
2.40e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 48.01
E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 411 AK EE TE L RFRQ L TM E YQAL Q RAYAL L QEQVGG -------- TLDAEREVKTR E Q L QA E VQRAQARI E D LE KA L A E QGQD mk 482
Cdd:COG1196 268 EL EE LR L ELEE L EL E LEEA Q AEEYE L LAELAR leqdiarl EERRRELEERL E E L EE E LAELEEEL E E LE EE L E E LEEE -- 345
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 483 w I EE KQALYRRNQELVEKIKQMET E EARLRH E VQDARDQNELLEFRI L ELEERERKSPA isfhhtpfvdgksplqvyc E A 562
Cdd:COG1196 346 - L EE AEEELEEAEAELAEAEEALL E AEAELA E AEEELEELAEELLEA L RAAAELAAQLE ------------------- E L 405
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 563 E GVTDIVVAE L MKKLDI L GDNANLTN E EQVVVIQARTV L TL A EKWLQQI EE T E A AL QRKMVD L ES E KE L fskqkgy L DEE 642
Cdd:COG1196 406 E EAEEALLER L ERLEEE L EELEEALA E LEEEEEEEEEA L EE A AEEEAEL EE E E E AL LELLAE L LE E AA L ------- L EAA 478
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 643 L DYRKQA L DQ A NKHI L E L EAMLY D ALQQEA G A K V A E LL SEEEREKLK VAV EQWK rqvms E LRERD A QILRERME L LQLAQ 722
Cdd:COG1196 479 L AELLEE L AE A AARL L L L LEAEA D YEGFLE G V K A A L LL AGLRGLAGA VAV LIGV ----- E AAYEA A LEAALAAA L QNIVV 553
330
....*....|....*.
gi 1972711282 723 QRIKELEER IE AQ K RQ 738
Cdd:COG1196 554 EDDEVAAAA IE YL K AA 569
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
2-740
8.00e-05
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 46.21
E-value: 8.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 2 KE LQAVRETL L RQHEAE L L R VIKIKDNENQR L QAL L SA L RDGGP E KV K TV ----- LL S E AKEEA K KGF E V E KVKMQQE I S 76
Cdd:TIGR02169 218 KE KREYEGYE L LKEKEA L E R QKEAIERQLAS L EEE L EK L TEEIS E LE K RL eeieq LL E E LNKKI K DLG E E E QLRVKEK I G 297
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 77 EL KG ---- AK R QVE E ALTLVIQ A DK i KA A EIRSVYHLHQE EI TRIKK E C E R E IR R --- L M EE IKFKDRAVFV L ER EL GVQ 149
Cdd:TIGR02169 298 EL EA eias LE R SIA E KERELED A EE - RL A KLEAEIDKLLA EI EELER E I E E E RK R rdk L T EE YAELKEELED L RA EL EEV 376
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 150 AGHAQRLQLQKEALD E Q L SQVRE adrhpgsprrelphaagag DASDHSGSPEQQLD E K da R R FQLKI A E L S A I I RKL E DR 229
Cdd:TIGR02169 377 DKEFAETRDELKDYR E K L EKLKR ------------------- EINELKRELDRLQE E L -- Q R LSEEL A D L N A A I AGI E AK 435
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 230 NAL L S EE RNELLKRVREA E SQYKP L LDKNKRLSRKNE DL SHALR R M E NK L KFVTQ E NI E MRQR A GIIRRPSSLNDLDQSQ 309
Cdd:TIGR02169 436 INE L E EE KEDKALEIKKQ E WKLEQ L AADLSKYEQELY DL KEEYD R V E KE L SKLQR E LA E AEAQ A RASEERVRGGRAVEEV 515
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 310 DEREVDFLKLQIVEQQNLIDELSKTL E T A G ------- Y V KSVLERDKLLRFR K Q RK ---------- KM AKLPKPVVVETF 372
Cdd:TIGR02169 516 LKASIQGVHGTVAQLGSVGERYATAI E V A A gnrlnnv V V EDDAVAKEAIELL K R RK agratflpln KM RDERRDLSILSE 595
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 373 F G YDEE A S -- L E S D --- GSSVS Y QTDR T DQT pctpd D D L E EG mak EETELRF R QL T M E YQALQRAY A L lqeq V GG TLDAE 447
Cdd:TIGR02169 596 D G VIGF A V dl V E F D pky EPAFK Y VFGD T LVV ----- E D I E AA --- RRLMGKY R MV T L E GELFEKSG A M ---- T GG SRAPR 663
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 448 REVKTREQLQ AE V QR AQA R I E D L EKA L AEQGQDMKW IE ek QA L YRRN QEL VEKIKQMETE E ARLRHEV Q DARDQN E L LE F 527
Cdd:TIGR02169 664 GGILFSRSEP AE L QR LRE R L E G L KRE L SSLQSELRR IE -- NR L DELS QEL SDASRKIGEI E KEIEQLE Q EEEKLK E R LE E 741
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 528 RILE L EER E RKSPAI sfhhtpfvdg KS P L Q vyc E A E GVTDIVVAE L M K KLDI L G D NANLTNEEQVVV IQA R tv L TLA E KW 607
Cdd:TIGR02169 742 LEED L SSL E QEIENV ---------- KS E L K --- E L E ARIEELEED L H K LEEA L N D LEARLSHSRIPE IQA E -- L SKL E EE 806
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 608 LQQ IE ETEAALQR K MVD L ES EKE LFS K QKGY L D E ELDYR K QALDQAN K H I LE L EAMLYDALQQEAGAKV A ELLS E EEREK 687
Cdd:TIGR02169 807 VSR IE ARLREIEQ K LNR L TL EKE YLE K EIQE L Q E QRIDL K EQIKSIE K E I EN L NGKKEELEEELEELEA A LRDL E SRLGD 886
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1972711282 688 LK VAVEQWKR Q v MS EL RER daqi LR E RMELLQLAQQ R IK EL EERI EA QKRQIK 740
Cdd:TIGR02169 887 LK KERDELEA Q - LR EL ERK ---- IE E LEAQIEKKRK R LS EL KAKL EA LEEELS 934
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
412-736
9.91e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 42.74
E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 412 K E ET EL RFRQ L TMEYQA L QRAYAL LQE QV ggtlda EREVKTR E Q L Q AE V Q RAQARI E D L EKALA E QG qdmkwi EE KQA L Y 491
Cdd:TIGR02168 220 A E LR EL ELAL L VLRLEE L REELEE LQE EL ------ KEAEEEL E E L T AE L Q ELEEKL E E L RLEVS E LE ------ EE IEE L Q 287
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 492 RRNQE L VEK I KQM E TEEAR LR HEVQDARD Q N E L LE FRIL ELE ERERKSPAIS fhh TPFVDGKSP L QVYC E AE gvtdiv V A 571
Cdd:TIGR02168 288 KELYA L ANE I SRL E QQKQI LR ERLANLER Q L E E LE AQLE ELE SKLDELAEEL --- AELEEKLEE L KEEL E SL ------ E A 358
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 572 EL MKKLDI L GDNANLTN E EQVVVIQA R TVLTLA E kwl Q QI EETEAALQ R kmvd LE SEK E LFSKQKGY L DE E LDYRKQA L D 651
Cdd:TIGR02168 359 EL EELEAE L EELESRLE E LEEQLETL R SKVAQL E --- L QI ASLNNEIE R ---- LE ARL E RLEDRRER L QQ E IEELLKK L E 431
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 652 Q A NKHI L EL E AMLYDALQQ E AGAKVAE L LSEE E REKLKVAVEQWKRQ vmse LR ER DAQI L RE R MEL L QLA Q QRIKELE E R 731
Cdd:TIGR02168 432 E A ELKE L QA E LEELEEELE E LQEELER L EEAL E ELREELEEAEQALD ---- AA ER ELAQ L QA R LDS L ERL Q ENLEGFS E G 507
....*
gi 1972711282 732 IE A QK 736
Cdd:TIGR02168 508 VK A LL 512
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
445-738
1.29e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 42.23
E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 445 D AER E VKTR - E Q L QAEVQR A ------ QARIED LE KA L A eq GQDMKWI E EKQALYRRN - Q EL VEKIKQM E T E E A R L RH E VQ 516
Cdd:COG1196 193 D ILG E LERQ l E P L ERQAEK A eryrel KEELKE LE AE L L -- LLKLREL E AELEELEAE l E EL EAELEEL E A E L A E L EA E LE 270
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 517 DA R DQN E L LE FRIL E LEER E RKS paisfhhtpfvdgksplqvyceaegvtdivvaelmkkldilgd N A N L TNE EQ VVVIQ 596
Cdd:COG1196 271 EL R LEL E E LE LELE E AQAE E YEL ------------------------------------------- L A E L ARL EQ DIARL 307
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 597 ARTVLT L A E K w L QQI EE TE A A L QRKMVD LE S E K E LFSKQKGYLD EEL DYRKQA L DQ A NKHI LE L EA M L YD A LQQEAGAKV 676
Cdd:COG1196 308 EERRRE L E E R - L EEL EE EL A E L EEELEE LE E E L E ELEEELEEAE EEL EEAEAE L AE A EEAL LE A EA E L AE A EEELEELAE 386
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1972711282 677 AE L LSEEEREK L KVAV E QWKRQVMSE L RERDAQILRERMELLQ LA QQRIK E L EE RIEAQKRQ 738
Cdd:COG1196 387 EL L EALRAAAE L AAQL E ELEEAEEAL L ERLERLEEELEELEEA LA ELEEE E E EE EEALEEAA 448
YhaN
COG4717 Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
405-739
1.80e-03
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain]
Cd Length: 641
Bit Score: 41.68
E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 405 D L E E GMA K E E TE L RFRQ L TM E YQ AL QRAY A L L Q E QVG gtl DA E REVKTREQ L QA E VQRAQ A RIED L EKA L A E QGQDMKWI 484
Cdd:COG4717 113 E L R E ELE K L E KL L QLLP L YQ E LE AL EAEL A E L P E RLE --- EL E ERLEELRE L EE E LEELE A ELAE L QEE L E E LLEQLSLA 189
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 485 E E KQA -- L YRRNQ EL VEKIKQM E T E EARLRH E VQDARDQN E L LE FRILELEER ER KS ------ PAISFHHTPFVD G K S P L 556
Cdd:COG4717 190 T E EEL qd L AEELE EL QQRLAEL E E E LEEAQE E LEELEEEL E Q LE NELEAAALE ER LK earlll LIAAALLALLGL G G S L L 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 557 QVYCEAE GV TDI V VAE lmkkld ILGDNAN L TN E EQVVVIQ A RTVLT L AEKWLQQI EE T E AA L QRKMVDLESEK E LFSKQK 636
Cdd:COG4717 270 SLILTIA GV LFL V LGL ------ LALLFLL L AR E KASLGKE A EELQA L PALEELEE EE L E EL L AALGLPPDLSP E ELLELL 343
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 637 GYLD E ELDYRKQ A LDQANKHI LE LEAMLYD AL QQ EAG AKVA E L L SE ----- EE REK LK VAV E QWKR Q VMSE L R E R ---- D 707
Cdd:COG4717 344 DRIE E LQELLRE A EELEEELQ LE ELEQEIA AL LA EAG VEDE E E L RA aleqa EE YQE LK EEL E ELEE Q LEEL L G E L eell E 423
330 340 350
....*....|....*....|....*....|..
gi 1972711282 708 A QILR E RM E L L QLAQQRIK ELEE RI E AQKRQI 739
Cdd:COG4717 424 A LDEE E LE E E L EELEEELE ELEE EL E ELREEL 455
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
413-537
2.55e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 41.44
E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 413 E E T E LRFRQLTMEYQ AL QRAYAL LQE Q vggt LD A EREVKTREQLQAE V QR A QAR I ED LE KA L AEQGQDMKWI ---- E EKQ 488
Cdd:COG4913 620 A E L E EELAEAEERLE AL EAELDA LQE R ---- RE A LQRLAEYSWDEID V AS A ERE I AE LE AE L ERLDASSDDL aale E QLE 695
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1972711282 489 A L YRRNQ EL V E KIKQMET E EA RL RH E VQD A RDQNEL L EF R ILEL E ERE R 537
Cdd:COG4913 696 E L EAELE EL E E ELDELKG E IG RL EK E LEQ A EEELDE L QD R LEAA E DLA R 744
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
425-739
2.96e-03
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 41.21
E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 425 E YQAL QRA yal LQ E QV G GT L DA E R E -- VKTR E QLQAEVQRAQARI E D L EKALA E QGQDMKW IE EKQA lyrrnq EL VE KIK 502
Cdd:TIGR02169 212 R YQAL LKE --- KR E YE G YE L LK E K E al ERQK E AIERQLASLEEEL E K L TEEIS E LEKRLEE IE QLLE ------ EL NK KIK 282
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 503 QM - E T E EA R LRHEVQDARDQNEL LE FR I L E L E ERERKSPA isfhhtpfvdgks P L QVYCEAEGVTDIVVA EL MKKL - DIL 580
Cdd:TIGR02169 283 DL g E E E QL R VKEKIGELEAEIAS LE RS I A E K E RELEDAEE ------------- R L AKLEAEIDKLLAEIE EL EREI e EER 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 581 GDNAN LT N E eqvv VIQARTV L TLAEKW L QQIEETE A ALQRKMV D LESEK E LFSKQKGY L DE ELD YRKQA L DQANKHILE L 660
Cdd:TIGR02169 350 KRRDK LT E E ---- YAELKEE L EDLRAE L EEVDKEF A ETRDELK D YREKL E KLKREINE L KR ELD RLQEE L QRLSEELAD L 425
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1972711282 661 E A MLYDAL qqeag AK VA EL LS E E E REK L KVAVEQ WK RQVMSELRERDA Q I L RER mellqla QQRIKEL E ERIEAQK R QI 739
Cdd:TIGR02169 426 N A AIAGIE ----- AK IN EL EE E K E DKA L EIKKQE WK LEQLAADLSKYE Q E L YDL ------- KEEYDRV E KELSKLQ R EL 492
COG2433
COG2433 Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
445-534
3.17e-03
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain]
Cd Length: 644
Bit Score: 41.00
E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 445 DA E REVKTR E -- Q L QAE V Q R AQ A RI E D LE KA L A E QGQDMKWI E EKQALY R RNQELV ---- EK I KQMET E EA RL RH E VQDA 518
Cdd:COG2433 405 ER E LTEEEE E ir R L EEQ V E R LE A EV E E LE AE L E E KDERIERL E RELSEA R SEERRE irkd RE I SRLDR E IE RL ER E LEEE 484
90
....*....|....*.
gi 1972711282 519 R DQN E L L EFRILE L E E 534
Cdd:COG2433 485 R ERI E E L KRKLER L K E 500
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
2-512
5.53e-03
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 40.31
E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 2 K E LQAVR E TL L RQH E AE LL RVIKIKDNENQR L QA L LSA L RDGGPEKVKTVLLS E AK EEA KKGFEVEKVKMQQ E IS EL KG A 81
Cdd:COG1196 350 E E ELEEA E AE L AEA E EA LL EAEAELAEAEEE L EE L AEE L LEALRAAAELAAQL E EL EEA EEALLERLERLEE E LE EL EE A 429
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 82 KRQV EE ALTLVIQ A DKIK A A E irsvyhlh QE E ITRIKKECEREIRR L M EE IKFKDR A VFV L ER EL GVQ A GHAQR L QLQKE 161
Cdd:COG1196 430 LAEL EE EEEEEEE A LEEA A E E -------- EA E LEEEEEALLELLAE L L EE AALLEA A LAE L LE EL AEA A ARLLL L LEAEA 501
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 162 ALDEQ L SQ V RE A DRHP G SPRRELPH A AGA G D asdhsgspeqqldek D A RRFQLKI A E L S A IIRKLEDRNALLSEERN E L L 241
Cdd:COG1196 502 DYEGF L EG V KA A LLLA G LRGLAGAV A VLI G V --------------- E A AYEAALE A A L A A ALQNIVVEDDEVAAAAI E Y L 566
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 242 K RVREAESQYK PL LDKNK R LSRKNEDLSH A LRRMENKLKFVTQ E NIEMRQRA G IIRRPSS L NDLDQSQDE R EVDF L KLQI 321
Cdd:COG1196 567 K AAKAGRATFL PL DKIRA R AALAAALARG A IGAAVDLVASDLR E ADARYYVL G DTLLGRT L VAARLEAAL R RAVT L AGRL 646
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 322 V E QQNLIDEL S KTLETA G YVKSV L ERDK L LRFRKQRKKMAK L pkpvvvetffg YD EE AS LE SDGSSVSYQTDRTDQ tpct 401
Cdd:COG1196 647 R E VTLEGEGG S AGGSLT G GSRRE L LAAL L EAEAELEELAER L ----------- AE EE LE LE EALLAEEEEERELAE ---- 711
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 402 p DDDLEEGMAK EE TE L RFRQLTMEYQA L QRAYALLQEQVGGT L DAER E VKTR E Q L QA E VQ R AQAR IE D L EK -- A LA eqgq 479
Cdd:COG1196 712 - AEEERLEEEL EE EA L EEQLEAEREEL L EELLEEEELLEEEA L EELP E PPDL E E L ER E LE R LERE IE A L GP vn L LA ---- 786
490 500 510
....*....|....*....|....*....|...
gi 1972711282 480 dmkw IEE KQA L YR R NQE L V E KIKQM E TEEAR L R 512
Cdd:COG1196 787 ---- IEE YEE L EE R YDF L S E QREDL E EARET L E 815
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
451-691
8.72e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 39.36
E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 451 KTREQLQ AE VQRA Q AR I ED LEK A LA EQGQDM K WIEEK - Q AL Y RR NQE L VEK I KQM E T E E A R L RH E VQDARDQNEL L EFRI 529
Cdd:COG4942 20 DAAAEAE AE LEQL Q QE I AE LEK E LA ALKKEE K ALLKQ l A AL E RR IAA L ARR I RAL E Q E L A A L EA E LAELEKEIAE L RAEL 99
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 530 LELE E RERKSPAISFHH tpfv DGKS PL QVYCEA E GVT D I V - VAELM K K L dilgdna NLTNE EQ VVVIQ A R tvltlaekw L 608
Cdd:COG4942 100 EAQK E ELAELLRALYRL ---- GRQP PL ALLLSP E DFL D A V r RLQYL K Y L ------- APARR EQ AEELR A D --------- L 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972711282 609 QQIEETE A A L QRKMVD LE SEKELFSKQKGY L DEELDY R KQA L DQAN K HIL EL E A M L YDAL Q QEA -- G A KV A E L LS E EERE 686
Cdd:COG4942 160 AELAALR A E L EAERAE LE ALLAELEEERAA L EALKAE R QKL L ARLE K ELA EL A A E L AELQ Q EAE el E A LI A R L EA E AAAA 239
....*
gi 1972711282 687 KLKVA 691
Cdd:COG4942 240 AERTP 244
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
