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Conserved domains on  [gi|1981092192|ref|NP_001380332|]
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tetratricopeptide repeat protein 28 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1390-1713 3.27e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


:

Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 220.71  E-value: 3.27e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1390 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1469
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1470 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1545
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1546 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1619
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1620 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1698
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 1981092192 1699 ----FSHPSNWAGFMLIGS 1713
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
947-1713 2.43e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


:

Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.14  E-value: 2.43e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG4995     11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1027 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG4995     91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1186
Cdd:COG4995    171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1187 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1266
Cdd:COG4995    246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1267 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1346
Cdd:COG4995    326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1347 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1426
Cdd:COG4995    406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1427 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1506
Cdd:COG4995    475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1507 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1580
Cdd:COG4995    540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1581 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1654
Cdd:COG4995    598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1655 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1713
Cdd:COG4995    653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
515-774 4.67e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 4.67e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250       260
                   ....*....|....*....|.
gi 1981092192  754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457    225 LALALLLALRLAALALYQYRA 245
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-937 8.39e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.39e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 1981092192  899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2080-2328 1.16e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2080 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2157
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2158 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2237
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2238 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2317
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 1981092192 2318 YSSAGSARSSP 2328
Cdd:pfam05109  611 GTSSTPVVTSP 621
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1390-1713 3.27e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 220.71  E-value: 3.27e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1390 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1469
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1470 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1545
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1546 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1619
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1620 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1698
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 1981092192 1699 ----FSHPSNWAGFMLIGS 1713
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
947-1713 2.43e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.14  E-value: 2.43e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG4995     11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1027 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG4995     91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1186
Cdd:COG4995    171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1187 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1266
Cdd:COG4995    246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1267 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1346
Cdd:COG4995    326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1347 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1426
Cdd:COG4995    406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1427 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1506
Cdd:COG4995    475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1507 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1580
Cdd:COG4995    540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1581 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1654
Cdd:COG4995    598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1655 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1713
Cdd:COG4995    653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
515-774 4.67e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 4.67e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250       260
                   ....*....|....*....|.
gi 1981092192  754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457    225 LALALLLALRLAALALYQYRA 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-937 8.39e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.39e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 1981092192  899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
791-1000 2.46e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 2.46e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  791 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 870
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  871 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 950
Cdd:COG0457     72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1981092192  951 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 1000
Cdd:COG0457    140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 63-157 7.04e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 7.04e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   63 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 142
Cdd:PLN03088     7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                           90
                   ....*....|....*
gi 1981092192  143 ADALAAFASGLAQDP 157
Cdd:PLN03088    87 QTAKAALEKGASLAP 101
TPR_12 pfam13424
Tetratricopeptide repeat;
834-909 2.35e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.63  E-value: 2.35e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 845-1148 7.27e-11

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 66.18  E-value: 7.27e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  845 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 924
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  925 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 1001
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1002 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1066
Cdd:pfam17874  167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1067 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:pfam17874  246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309


                   ..
gi 1981092192 1147 FE 1148
Cdd:pfam17874  310 AE 311
TPR_12 pfam13424
Tetratricopeptide repeat;
515-586 1.09e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 1.09e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 586
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2080-2328 1.16e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2080 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2157
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2158 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2237
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2238 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2317
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 1981092192 2318 YSSAGSARSSP 2328
Cdd:pfam05109  611 GTSSTPVVTSP 621
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
886-989 2.87e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 2.87e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  886 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 965
Cdd:COG3063      1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                           90       100
                   ....*....|....*....|....
gi 1981092192  966 LHSQLGNYEQAISCLERQLNIARD 989
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPS 91
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 962-1198 1.06e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 54.15  E-value: 1.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  962 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1030
Cdd:NF040586   439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1031 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1104
Cdd:NF040586   514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1105 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1181
Cdd:NF040586   590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                          250
                   ....*....|....*..
gi 1981092192 1182 LGHHDEALAVAERGRTR 1198
Cdd:NF040586   660 LGDADEARELAREVLDR 676
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 516-626 1.22e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 595
Cdd:PRK02603    37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1981092192  596 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 626
Cdd:PRK02603   108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 878-902 2.25e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 2.25e-05
                            10        20
                    ....*....|....*....|....*
gi 1981092192   878 RAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
PHA03378 PHA03378
EBNA-3B; Provisional
 2102-2408 3.44e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 49.30  E-value: 3.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2102 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2175
Cdd:PHA03378   520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2176 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2247
Cdd:PHA03378   597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2248 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2316
Cdd:PHA03378   671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2317 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2396
Cdd:PHA03378   746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                          330
                   ....*....|..
gi 1981092192 2397 EEGVDKLELKEL 2408
Cdd:PHA03378   817 QQGPTKQILRQL 828
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 475-683 1.75e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.22  E-value: 1.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 549
Cdd:NF040586   521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  550 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 624
Cdd:NF040586   601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  625 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 683
Cdd:NF040586   671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 635-666 5.74e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 5.74e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1981092192   635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1008-1140 1.15e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1008 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1087
Cdd:PRK02603    46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1088 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1140
Cdd:PRK02603   108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 957-990 1.19e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.19e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1981092192   957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 878-1206 1.20e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.14  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  878 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 943
Cdd:NF040586   435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  944 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 1014
Cdd:NF040586   505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1015 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 1077
Cdd:NF040586   580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1078 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1148
Cdd:NF040586   656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1149 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1206
Cdd:NF040586   720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 73-149 2.19e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.98  E-value: 2.19e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192   73 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:NF040959   120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1390-1713 3.27e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 220.71  E-value: 3.27e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1390 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1469
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1470 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1545
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1546 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1619
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1620 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1698
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 1981092192 1699 ----FSHPSNWAGFMLIGS 1713
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
947-1713 2.43e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.14  E-value: 2.43e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG4995     11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1027 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG4995     91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1186
Cdd:COG4995    171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1187 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1266
Cdd:COG4995    246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1267 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1346
Cdd:COG4995    326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1347 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1426
Cdd:COG4995    406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1427 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1506
Cdd:COG4995    475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1507 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1580
Cdd:COG4995    540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1581 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1654
Cdd:COG4995    598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1655 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1713
Cdd:COG4995    653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
515-774 4.67e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 4.67e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 594
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  595 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 674
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  675 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 753
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250       260
                   ....*....|....*....|.
gi 1981092192  754 ASAYAALGTAYRMIQKYDKAL 774
Cdd:COG0457    225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
875-1146 4.43e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 109.33  E-value: 4.43e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  875 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELgeAF 954
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  955 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETnnpt 1034
Cdd:COG0457     74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1035 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1114
Cdd:COG0457    144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA---------LGEAALALAAAEVLLALLLALEQALRKKLA 212

                          250       260       270
                   ....*....|....*....|....*....|..
gi 1981092192 1115 DEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:COG0457    213 ILTLAALAELLLLALALLLALRLAALALYQYR 244
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-937 8.39e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.39e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   47 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 123
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  124 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 203
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  204 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 277
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  278 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 357
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  358 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 431
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  432 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 504
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  505 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 584
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  585 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  664 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 740
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  741 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 818
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  819 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 898
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 1981092192  899 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
791-1000 2.46e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 2.46e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  791 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 870
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  871 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 950
Cdd:COG0457     72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1981092192  951 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 1000
Cdd:COG0457    140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
753-1000 4.90e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.47  E-value: 4.90e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  753 EASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 832
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPDD 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  833 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 912
Cdd:COG0457     76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  913 mqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLvvAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 992
Cdd:COG0457    142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                   ....*...
gi 1981092192  993 RALESDAA 1000
Cdd:COG0457    218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 516-821 1.53e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 97.11  E-value: 1.53e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  516 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 593
Cdd:COG2956      8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 673
Cdd:COG2956     76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  674 AKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlE 753
Cdd:COG2956    144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1981092192  754 ASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQL 821
Cdd:COG2956    212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
593-835 1.69e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 96.23  E-value: 1.69e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  593 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 672
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  673 qAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 752
Cdd:COG0457     76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  753 eASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSL 832
Cdd:COG0457    144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220


                   ...
gi 1981092192  833 EAQ 835
Cdd:COG0457    221 ELL 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
350-597 6.06e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.69  E-value: 6.06e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  350 ELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIakdlgnKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELME 429
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  430 kaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 509
Cdd:COG0457     78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  510 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG0457    146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                   ....*...
gi 1981092192  590 IQSEARAL 597
Cdd:COG0457    218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 754-1105 1.58e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.03  E-value: 1.58e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  754 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYtmafkcyeeqldlgqklkdpsle 833
Cdd:COG2956      8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEY----------------------- 58

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  834 aqvygnmgitkmnmnvmEEAIGYFEQQLAMLQQlsgnesvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 913
Cdd:COG2956     59 -----------------DRAIRIHQKLLERDPD---------RAEALLELAQDYLKAGLLDRAEELLEKLLELDP----- 107

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  914 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdr 993
Cdd:COG2956    108 -DDAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGP--ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--- 177

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  994 aleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETNNPTCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 1073
Cdd:COG2956    178 ---ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248

                          330       340       350
                   ....*....|....*....|....*....|..
gi 1981092192 1074 AAktvsyssLGRTHHALQNYSQAVMYLQEGLR 1105
Cdd:COG2956    249 LA-------LADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 720-1019 1.91e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 1.91e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  720 LGDIFICKKDINGAIKFYEQqlglAHQVKDRRLEAsaYAALGTAYRMIQKYDKALGYHTQELEVYQELSdlpgecRAHGH 799
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEE----ALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  800 LAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLE-AQVYgnmgitkmnmnvmeEAIGYFEQQLAMLQQLSgnESVLDRGR 878
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLlAEIY--------------EQEGDWEKAIEVLERLL--KLGPENAH 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgeafnKAQ 958
Cdd:COG2956    146 AYCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLP 213

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981092192  959 AYGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG2956    214 ALPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 640-937 2.04e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 2.04e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  640 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkYLLSLaqsLNNSQAKFRALGN 719
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHG 798
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  799 HLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDRgr 878
Cdd:COG2956    149 ELAELYLEQGDYDEAIEALEKALKL-----DPDC-ARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPR-- 217

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192  879 aygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQAL 937
Cdd:COG2956    218 ----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 883-1182 2.81e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.26  E-value: 2.81e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  883 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGE 962
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQK----LLERDP--DRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  963 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGN 1042
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1043 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1122
Cdd:COG2956    150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1123 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1182
Cdd:COG2956    218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
316-575 6.17e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 6.17e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQskdelsEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeAR 395
Cdd:COG0457     10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 475
Cdd:COG0457     78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  476 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 555
Cdd:COG0457    146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225

                          250       260
                   ....*....|....*....|
gi 1981092192  556 THGNLAVAYQALGAHDRALQ 575
Cdd:COG0457    226 ALALLLALRLAALALYQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 560-862 1.96e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.96e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  560 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 639
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  640 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAKFRalgn 719
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 798
Cdd:COG2956    150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  799 HLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYgnmgitkMNMNVMEEAIGYFEQQLA 862
Cdd:COG2956    217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 416-679 2.12e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.45  E-value: 2.12e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  416 YHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI---AEDLKDRAAEGRASSNLGIIHQMKGDYDT 492
Cdd:COG3914     17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaAAAAAALLLLAALLELAALLLQALGRYEE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  493 ALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHD 571
Cdd:COG3914     97 AL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLE 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  572 RALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQ 651
Cdd:COG3914    164 EAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALRQACDWE 231

                          250       260
                   ....*....|....*....|....*...
gi 1981092192  652 EAVKYYEQDLALAKDLHDKLSQAKAYCN 679
Cdd:COG3914    232 VYDRFEELLAALARGPSELSPFALLYLP 259
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 359-622 3.07e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.48  E-value: 3.07e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  359 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYA 438
Cdd:COG2956     47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALR 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  439 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 518
Cdd:COG2956    115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  519 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 598
Cdd:COG2956    183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249

                          250       260
                   ....*....|....*....|....
gi 1981092192  599 NLGNFHCSRGEYVQAAPYYEQYLR 622
Cdd:COG2956    250 ALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
673-923 1.97e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.29  E-value: 1.97e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  673 QAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 752
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIED------YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  753 eASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 832
Cdd:COG0457     76 -AEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DPDD 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  833 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNR 912
Cdd:COG0457    144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222

                          250
                   ....*....|.
gi 1981092192  913 MQDQAKAYRGL 923
Cdd:COG0457    223 LLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 284-1150 1.23e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 86.68  E-value: 1.23e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  284 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALAshkqcvllakqskdELSEARELG-NMGA 362
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEK--------------ELRKALSLGyPKNQ 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  363 V-------YIAMGDFENAVQcheqhLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKaiemR 435
Cdd:TIGR02917   92 VlpllaraYLLQGKFQQVLD-----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----S 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  436 AYAGLGHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGR 515
Cdd:TIGR02917  159 LYAKLGLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVL 230

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  516 AygNMGNAYNALGMYDQAVKYHRQELQIsmeVNDRASQASTHGnlAVAYQAlGAHDRALQHYQNHLNIARElrdiQSEAR 595
Cdd:TIGR02917  231 L--ALATILIEAGEFEEAEKHADALLKK---APNSPLAHYLKA--LVDFQK-KNYEDARETLQDALKSAPE----YLPAL 298

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  596 ALSNLGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAK 675
Cdd:TIGR02917  299 LLAGASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  676 AYcnLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLgdiFICKKDINGAIKFYEQQLGLAHQVKDRRLeas 755
Cdd:TIGR02917  364 AA--LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS---KLSQGDPSEAIADLETAAQLDPELGRADL--- 435

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  756 ayaALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQ---------- 825
Cdd:TIGR02917  436 ---LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdffpaaanla 506

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  826 ----KLKDPSLEAQVYGNM-GITKMNMNVMeeaigyfeQQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEE 895
Cdd:TIGR02917  507 ridiQEGNPDDAIQRFEKVlTIDPKNLRAI--------LALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYL 578

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  896 AIKYYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYE 974
Cdd:TIGR02917  579 GKGQLKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP------DSALALLLLADAYAVMKNYA 652

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  975 QAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtnnptcqgrAYGN--LGLTYESLG 1051
Cdd:TIGR02917  653 KAITSLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQK 717

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1052 TFERAVVYQEQHLSIAAQmNDLAAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasG 1131
Cdd:TIGR02917  718 DYPAAIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------A 777

                          890
                   ....*....|....*....
gi 1981092192 1132 NLEEAQHQLYRASALFETI 1150
Cdd:TIGR02917  778 ELYLAQKDYDKAIKHYQTV 796
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 276-542 4.23e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.93  E-value: 4.23e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  276 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQcvLLAKQSKDElsEAR 355
Cdd:COG2956     44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEK--LLELDPDDA--EAL 113

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  356 ELgnMGAVYIAMGDFENAVQCHEQHLKIAKdlgnkrEEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMekaiemR 435
Cdd:COG2956    114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA------R 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  436 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 515
Cdd:COG2956    180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                          250       260
                   ....*....|....*....|....*..
gi 1981092192  516 aygnmgnAYNALGMYDQAVKYHRQELQ 542
Cdd:COG2956    254 -------LLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-166 7.21e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 7.21e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457     22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                           90
                   ....*....|....*
gi 1981092192  152 GLAQDPKSLQLLVGM 166
Cdd:COG0457    102 ALELDPDDAEALYNL 116
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 304-987 8.32e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.90  E-value: 8.32e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  304 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAvqchE 378
Cdd:TIGR02917  178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------IAVLLALATILIEAGEFEEA----E 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  379 QHLKIAKDLGNKREEARAYSNLgsaYHYRR-NFDKAMSYHNYVLELAQELMEkaieMRAYAGLGHAARcmQDLERAKQYH 457
Cdd:TIGR02917  248 KHADALLKKAPNSPLAHYLKAL---VDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQAYQYL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  458 EQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKY- 536
Cdd:TIGR02917  319 NQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAEYl 386

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  537 ------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQSEARA 596
Cdd:TIGR02917  387 akateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQPDNAS 466

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  597 LSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDLHDKLS 672
Cdd:TIGR02917  467 LHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRAILALA 540

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  673 QAKAYCN--------LGLAFKA-------LLNFSKAEECQKYL---LSLAQS-LNNSQAKFRALGNLGDIFICKKDINGA 733
Cdd:TIGR02917  541 GLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAGDLNKA 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  734 IKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMA 813
Cdd:TIGR02917  621 VSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAKRTESA 688

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  814 FKCYEEQLDlgQKLKDP---SLEAQVYgnmgitkMNMNVMEEAIGYFEQ------------QLAMLQQLSGN-------- 870
Cdd:TIGR02917  689 KKIAKSLQK--QHPKAAlgfELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavktl 759

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  871 ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghrAMGSLQQ----ALVCFEK 942
Cdd:TIGR02917  760 EAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL-----AWLYLELkdprALEYAER 828

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 1981092192  943 rlvvAHELgeAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 987
Cdd:TIGR02917  829 ----ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
240-494 1.08e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.20  E-value: 1.08e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  240 LSSAYWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 319
Cdd:COG0457     14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  320 LGHVYTAIGDYPNALASHKQcvllAKQSKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSN 399
Cdd:COG0457     82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  400 LGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 479
Cdd:COG0457    150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229

                          250
                   ....*....|....*
gi 1981092192  480 LGIIHQMKGDYDTAL 494
Cdd:COG0457    230 LLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
998-1268 1.23e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.20  E-value: 1.23e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  998 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAkt 1077
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEA-- 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1078 vsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1157
Cdd:COG0457     79 --LNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1158 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVL 1237
Cdd:COG0457    137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1981092192 1238 YYSLAAGYLYSWLLAPGAGIVKFHEHYLGEN 1268
Cdd:COG0457    213 ILTLAALAELLLLALALLLALRLAALALYQY 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-188 7.72e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 7.72e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457     56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1981092192  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQK 188
Cdd:COG0457    136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 737-904 2.08e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.08e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 815
Cdd:COG3914     54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  816 CYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 895
Cdd:COG3914    134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198


                   ....*....
gi 1981092192  896 AIKYYEQYL 904
Cdd:COG3914    199 AIAAYRRAL 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 522-744 2.30e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.30e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  522 NAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDiqsEARALSNLG 601
Cdd:COG3914      9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL---LAALLELAA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  602 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLG 681
Cdd:COG3914     86 LLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLG 153

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  682 LAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGNLGDIFICKKDINGAIKFYEQQLGLA 744
Cdd:COG3914    154 EALRRLGRLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 737-1040 5.80e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.64  E-value: 5.80e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKC 816
Cdd:COG3914     21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  817 YEEQLDLgqklkDPsleaqvygnmgitkmnmnvmeeaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEA 896
Cdd:COG3914    101 YRRALAL-----NP--------------------------------------------DNAEALFNLGNLLLALGRLEEA 131

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  897 IKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYEQA 976
Cdd:COG3914    132 LAALRRALALN------PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP------DNAEALNNLGNALQDLGRLEEA 199

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  977 ISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAY 1040
Cdd:COG3914    200 IAAYRRALELDPD------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 63-157 7.04e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 7.04e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   63 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 142
Cdd:PLN03088     7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                           90
                   ....*....|....*
gi 1981092192  143 ADALAAFASGLAQDP 157
Cdd:PLN03088    87 QTAKAALEKGASLAP 101
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 560-826 1.89e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 1.89e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  560 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 639
Cdd:COG3914      4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  640 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGN 719
Cdd:COG3914     84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 798
Cdd:COG3914    152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218

                          250       260
                   ....*....|....*....|....*...
gi 1981092192  799 HLAAVYMALGKYTmAFKCYEEQLDLGQK 826
Cdd:COG3914    219 NLLFALRQACDWE-VYDRFEELLAALAR 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
72-158 3.25e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 3.25e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG4785     87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                   ....*..
gi 1981092192  152 GLAQDPK 158
Cdd:COG4785    167 ALELDPN 173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 72-166 3.80e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 3.80e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3914     92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171

                           90
                   ....*....|....*
gi 1981092192  152 GLAQDPKSLQLLVGM 166
Cdd:COG3914    172 ALELDPDNAEALNNL 186
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 754-905 5.01e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 5.01e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  754 ASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSl 832
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPD- 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  833 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG4783     71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-382 5.18e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.99  E-value: 5.18e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  101 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 180
Cdd:COG2956     17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  181 PTYQQLQKMKLDKSPfvVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAYWSLGNTEKSTGYMQQD 260
Cdd:COG2956     97 ELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  261 LDVAKTLGdqtgecRAHGNLGSAFFSKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQC 340
Cdd:COG2956    171 LKLDPDCA------RALLLLAELYLEQGDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1981092192  341 VLLAKQSKDELSEARelgnmgaVYIAMGDFENAVQCHEQHLK 382
Cdd:COG2956    239 LELDPSDDLLLALAD-------LLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 60-192 7.67e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 7.67e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYL 139
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  140 GRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD 192
Cdd:COG4783     86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 70-159 9.39e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 9.39e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   70 HDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:COG4783     50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129

                           90
                   ....*....|
gi 1981092192  150 ASGLAQDPKS 159
Cdd:COG4783    130 EKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
85-359 1.15e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 1.15e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   85 LAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLV 164
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  165 GMveaamkspmrdsleptyqqlqkmkldkspfvvvsvvGQELLTAGHHGASVVVLEAALKIGTCSLKlrgsVFSALSSAY 244
Cdd:COG0457     81 NL------------------------------------GLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLAL 120

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  245 WSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVY 324
Cdd:COG0457    121 LELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194

                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1981092192  325 TAIGDYPNALASHKQCVLLAKQSKDELSEARELGN 359
Cdd:COG0457    195 VLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 72-196 1.46e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 1.46e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3914    126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1981092192  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD---KSPF 196
Cdd:COG3914    206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGpseLSPF 253
TPR_12 pfam13424
Tetratricopeptide repeat;
834-909 2.35e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.63  E-value: 2.35e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 72-157 2.60e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 64.21  E-value: 2.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG5010     68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                   ....*.
gi 1981092192  152 GLAQDP 157
Cdd:COG5010    148 ALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-156 4.41e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.41e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457     90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169


                   ....*
gi 1981092192  152 GLAQD 156
Cdd:COG0457    170 LEAAA 174
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 845-1148 7.27e-11

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 66.18  E-value: 7.27e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  845 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 924
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  925 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 1001
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1002 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1066
Cdd:pfam17874  167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1067 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:pfam17874  246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309


                   ..
gi 1981092192 1147 FE 1148
Cdd:pfam17874  310 AE 311
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
72-161 7.43e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.57  E-value: 7.43e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALdDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG3063      6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84

                           90
                   ....*....|
gi 1981092192  152 GLAQDPKSLQ 161
Cdd:COG3063     85 ALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 504-666 8.18e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 8.18e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  504 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 583
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  584 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:COG4783     64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                   ...
gi 1981092192  664 AKD 666
Cdd:COG4783    136 DPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
562-1146 8.71e-11

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 67.96  E-value: 8.71e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  562 VAYQALGAHDRALQHYQ---------------------NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQY 620
Cdd:COG3899    655 AAYASLPPEERRALHRRiaraleargpepleerlfelaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERA 731

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  621 LRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFSKA 693
Cdd:COG3899    732 LELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEA 809

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  694 EECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALgtAYRMIQKYDKA 773
Cdd:COG3899    810 YEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAA--AAAAAAAAALA 887

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  774 LGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQvygnmgitkmnmnVMEEA 853
Cdd:COG3899    888 AAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA-------------AAAAL 954

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  854 IGYFEQQLAMLQQLSGNEsvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSL 933
Cdd:COG3899    955 AAALALAAAAAAAAAAAL--AAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  934 QQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEY 1013
Cdd:COG3899   1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1014 DTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNY 1093
Cdd:COG3899   1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAA 1191

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1981092192 1094 SQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:COG3899   1192 AAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 504-665 1.47e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 1.47e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  504 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 583
Cdd:COG5010      4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  584 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 663
Cdd:COG5010     84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151


                   ..
gi 1981092192  664 AK 665
Cdd:COG5010    152 SP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-224 2.76e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 2.76e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG2956    124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLDKSPFVVVSVVgqeLLTAGHHGASVVVLEAALK 224
Cdd:COG2956    204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 875-997 4.19e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.63  E-value: 4.19e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  875 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeaf 954
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1981092192  955 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 997
Cdd:COG4235     83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
COG3899 COG3899
Predicted ATPase [General function prediction only];
926-1208 5.71e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 65.26  E-value: 5.71e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  926 GHRAM--GSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI-------ARDMKDRALE 996
Cdd:COG3899    712 ARRALarGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPAS 791

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  997 SDAACGLGGVYqqMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAk 1076
Cdd:COG3899    792 ARAYANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAAL- 868

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1077 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQL 1156
Cdd:COG3899    869 ALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAA 948

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1981092192 1157 STDYKLSLFDlqtssYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQ 1208
Cdd:COG3899    949 AAAAALAAAL-----ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAA 995
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 883-1029 6.39e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 6.39e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  883 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGE 962
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEARLN 77

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  963 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1029
Cdd:COG4783     78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
298-624 7.93e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 64.88  E-value: 7.93e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  298 RHQLVlamklkdREAASSALSS--------------LGHVYTAIGDYPNALASHkqcvLLAKQSKDELSEARELGnmGAV 363
Cdd:COG3899    648 RHDLV-------REAAYASLPPeerralhrriaralEARGPEPLEERLFELAHH----LNRAGERDRAARLLLRA--ARR 714

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  364 YIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIE-----MRAYA 438
Cdd:COG3899    715 ALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRhgnppASARA 794

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  439 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 518
Cdd:COG3899    795 YANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  519 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 598
Cdd:COG3899    875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                          330       340
                   ....*....|....*....|....*.
gi 1981092192  599 NLGNFHCSRGEYVQAAPYYEQYLRLA 624
Cdd:COG3899    954 LAAALALAAAAAAAAAAALAAAAAAA 979
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
563-669 8.67e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.87  E-value: 8.67e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  563 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 642
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1981092192  643 AHYCLGNYQEAVKYYEQDLALAKDLHD 669
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 471-626 9.59e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 9.59e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  471 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 550
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  551 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG4783     71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 251-500 1.08e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 1.08e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  251 EKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAmklkdrEAASSALSSLGHVYTAIGDY 330
Cdd:COG3914     55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGRL 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  331 PNALASHKQCVLLakqsKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNF 410
Cdd:COG3914    129 EEALAALRRALAL----NPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRL 196

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  411 DKAMSYHNYVLELAQELmekaiemraYAGLGHAARCMQDLERAKQYHEQQlgiaEDLKDRAAEGRASSNLGIIHQMKGDY 490
Cdd:COG3914    197 EEAIAAYRRALELDPDN---------ADAHSNLLFALRQACDWEVYDRFE----ELLAALARGPSELSPFALLYLPDDDP 263

                          250
                   ....*....|
gi 1981092192  491 DTALKLHKTH 500
Cdd:COG3914    264 AELLALARAW 273
TPR_12 pfam13424
Tetratricopeptide repeat;
515-586 1.09e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 1.09e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  515 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 586
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 947-1146 1.33e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.33e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  947 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1026
Cdd:COG3914     28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1027 aeetnNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmnDLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRL 1106
Cdd:COG3914    108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNP---DFAE---AYLNLGEALRRLGRLEEAIAALRRALEL 175

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1981092192 1107 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1146
Cdd:COG3914    176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
TPR_12 pfam13424
Tetratricopeptide repeat;
957-1029 1.68e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.68e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981092192  957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1029
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 549-695 2.64e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.43  E-value: 2.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  549 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 628
Cdd:COG5010      9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  629 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEE 695
Cdd:COG5010     87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
COG3899 COG3899
Predicted ATPase [General function prediction only];
387-674 2.65e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 62.95  E-value: 2.65e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  387 LGNKREEARAYsNLGSAYHYRRN--FDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI- 463
Cdd:COG3899    697 RAGERDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAr 775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  464 ------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYH 537
Cdd:COG3899    776 alaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELL 853

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  538 RQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYV 611
Cdd:COG3899    854 REALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALAL 933

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  612 QAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 674
Cdd:COG3899    934 AAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 129-501 3.34e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 3.34e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  129 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVgmveaamkspmrdsleptyqqlqkmkldkspfvvvsvvgqellt 208
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-------------------------------------------- 46

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  209 aghhgasvvvleaalkigtcslklrgsvfsALSSAYWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFFSKG 288
Cdd:COG2956     47 ------------------------------ALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQDYLKAG 90

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  289 NYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMG 368
Cdd:COG2956     91 LLDRAEE------LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN------AHAYCELAELYLEQG 158

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  369 DFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAmsyhnyvLELAQELMEKAIE-MRAYAGLGHAARCM 447
Cdd:COG2956    159 DYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEA-------IAALERALEQDPDyLPALPRLAELYEKL 225

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  448 QDLERAKQYHEQQLGIAEDLKDRAAegrassnLGIIHQMKGDYDTALKLHKTHL 501
Cdd:COG2956    226 GDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQL 272
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-146 3.96e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 3.96e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   31 ASAPIPLFGADTIGQrsPDGPvlSKAEFVEKVRQS---------NQACHDGDFHTAIVLYNEALAVDPqNCILYSNRSAA 101
Cdd:TIGR00990   95 APKNAPVEPADELPE--IDES--SVANLSEEERKKyaaklkekgNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAAC 169

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1981092192  102 YMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADAL 146
Cdd:TIGR00990  170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
TPR_12 pfam13424
Tetratricopeptide repeat;
552-626 4.25e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.09  E-value: 4.25e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  552 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
523-629 6.72e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 6.72e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  523 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 602
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1981092192  603 FHCSRGEYVQAAPYYEQYLRLAPDLQD 629
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 956-1107 6.86e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 6.86e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  956 KAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETNNPt 1034
Cdd:COG4783      3 CAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDEP- 72

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192 1035 cqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLaaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 1107
Cdd:COG4783     73 ---EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2080-2328 1.16e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2080 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2157
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2158 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2237
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2238 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2317
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 1981092192 2318 YSSAGSARSSP 2328
Cdd:pfam05109  611 GTSSTPVVTSP 621
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 785-907 1.56e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 1.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  785 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQqlaML 864
Cdd:COG4235      8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1981092192  865 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 907
Cdd:COG4235     79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 800-944 1.62e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 1.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  800 LAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRA 879
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981092192  880 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 944
Cdd:COG4783     75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 834-990 1.78e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 1.78e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  834 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 913
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  914 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:COG4783     70 -DEPEARLNLGLALLKAGDYDEALALLEK----ALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
357-426 1.79e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.55  E-value: 1.79e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1981092192  357 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL--GNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 426
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 957-1194 2.03e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 2.03e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETNNPTCQ 1036
Cdd:COG3914      1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1037 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 1116
Cdd:COG3914     78 AALLELAALLLQALGRYEEALALYRRALALNP--DNAEA----LFNLGNLLLALGRLEEALAALRRALALNP------DF 145

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1981092192 1117 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1194
Cdd:COG3914    146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 290-459 2.47e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 2.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  290 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvLLAKQSkdelSEARELGNMGAVYIAMGD 369
Cdd:COG3914     54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRR--ALALNP----DNAEALFNLGNLLLALGR 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  370 FENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQD 449
Cdd:COG3914    128 LEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGR 195

                          170
                   ....*....|
gi 1981092192  450 LERAKQYHEQ 459
Cdd:COG3914    196 LEEAIAAYRR 205
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 743-904 2.49e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 2.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  743 LAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLD 822
Cdd:COG5010      3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  823 LgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:COG5010     83 L-----DPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQR 147


                   ..
gi 1981092192  903 YL 904
Cdd:COG5010    148 AL 149
COG3899 COG3899
Predicted ATPase [General function prediction only];
290-624 2.73e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 59.87  E-value: 2.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  290 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYiaMGD 369
Cdd:COG3899    728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  370 FENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQD 449
Cdd:COG3899    806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  450 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 523
Cdd:COG3899    886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  524 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 603
Cdd:COG3899    966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044

                          330       340
                   ....*....|....*....|.
gi 1981092192  604 HCSRGEYVQAAPYYEQYLRLA 624
Cdd:COG3899   1045 LLAALAAAAAAAAAAAALAAA 1065
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
886-989 2.87e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 2.87e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  886 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 965
Cdd:COG3063      1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                           90       100
                   ....*....|....*....|....
gi 1981092192  966 LHSQLGNYEQAISCLERQLNIARD 989
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 72-159 3.79e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 3.79e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG4235     31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110


                   ....*...
gi 1981092192  152 GLAQDPKS 159
Cdd:COG4235    111 LLALLPAD 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 77-172 4.01e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 4.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   77 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 156
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90
                   ....*....|....*.
gi 1981092192  157 PKSLQLLVGMVEAAMK 172
Cdd:COG4235     82 PDNPEALYLLGLAAFQ 97
TPR_12 pfam13424
Tetratricopeptide repeat;
915-989 4.71e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 4.71e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  915 DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAF--NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 392-546 5.67e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 5.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYAGLGHAARCMQDLERA-KQYHEQqlgiaedLKDR 470
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAiVLLHEA-------LELD 68

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  471 AAEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 546
Cdd:COG4783     69 PDEPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
475-543 5.67e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 5.67e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981092192  475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 543
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-259 7.02e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 7.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG2956     90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  152 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLK 231
Cdd:COG2956    170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                          170       180
                   ....*....|....*....|....*...
gi 1981092192  232 LRgsvfsALSSAYWSLGNTEKSTGYMQQ 259
Cdd:COG2956    248 LL-----ALADLLERKEGLEAALALLER 270
TPR_12 pfam13424
Tetratricopeptide repeat;
313-386 9.42e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 9.42e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  313 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 386
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 514-626 1.01e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 1.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  514 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 593
Cdd:COG4235     17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1981092192  594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:COG4235     85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
529-763 1.80e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 1.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  529 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 601
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  602 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 681
Cdd:COG4785     81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  682 LAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALG 761
Cdd:COG4785    149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221


                   ..
gi 1981092192  762 TA 763
Cdd:COG4785    222 LA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 672-823 2.91e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 2.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  672 SQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrr 751
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1981092192  752 lEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDL 823
Cdd:COG4783     71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
803-912 3.07e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 3.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  803 VYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 882
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALEL-----DPD-NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64

                           90       100       110
                   ....*....|....*....|....*....|
gi 1981092192  883 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 912
Cdd:COG3063     65 LAELLLELGDYDEALAYLERALELDPSALR 94
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2177-2334 5.42e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 55.31  E-value: 5.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2177 GQVSKSNNPEDgVQAPSSTAvfRASETSAFSRPVLSHQKSQPSPVTvkPKPPARSSSLPKVSSGYSSPTTSEMSikdsPS 2256
Cdd:pfam05109  447 GLPSSTHVPTN-LTAPASTG--PTVSTADVTSPTPAGTTSGASPVT--PSPSPRDNGTESKAPDMTSPTSAVTT----PT 517

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2257 QHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSP---ADAPD 2333
Cdd:pfam05109  518 PNATSPTPAVTTPTPNATSPTLG---KTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPT 594


                   .
gi 1981092192 2334 I 2334
Cdd:pfam05109  595 V 595
TPR_12 pfam13424
Tetratricopeptide repeat;
999-1069 6.11e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.92  E-value: 6.11e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  999 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 1069
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 640-786 1.01e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 1.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  640 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGN 719
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  720 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 786
Cdd:COG4783     78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
966-1068 1.05e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 1.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  966 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETNNPtcqgRAYGNLGL 1045
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67

                           90       100
                   ....*....|....*....|...
gi 1981092192 1046 TYESLGTFERAVVYQEQHLSIAA 1068
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDP 90
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 962-1198 1.06e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 54.15  E-value: 1.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  962 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1030
Cdd:NF040586   439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1031 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1104
Cdd:NF040586   514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1105 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1181
Cdd:NF040586   590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                          250
                   ....*....|....*..
gi 1981092192 1182 LGHHDEALAVAERGRTR 1198
Cdd:NF040586   660 LGDADEARELAREVLDR 676
TPR_12 pfam13424
Tetratricopeptide repeat;
1079-1148 1.15e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 1.15e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1981092192 1079 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1148
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 516-626 1.22e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 595
Cdd:PRK02603    37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1981092192  596 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 626
Cdd:PRK02603   108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2190-2337 1.33e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 54.15  E-value: 1.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2190 QAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLPKVSSG-YSSPTTSEMSIKDSPSQHSgrPSP---G 2265
Cdd:pfam05109  423 KAPESTTTSPTLNTTGFAAP--NTTTGLPSSTHVPTNLTAPASTGPTVSTAdVTSPTPAGTTSGASPVTPS--PSPrdnG 498

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192 2266 CDSQTSQLDQPLFKLKYPS----SPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSPADAPDIDKL 2337
Cdd:pfam05109  499 TESKAPDMTSPTSAVTTPTpnatSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTL 574
TPR_7 pfam13176
Tetratricopeptide repeat;
637-670 1.48e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.76  E-value: 1.48e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1981092192  637 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 670
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 421-584 1.57e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  421 LELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 500
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  501 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 580
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                   ....
gi 1981092192  581 LNIA 584
Cdd:COG5010    149 LGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 301-464 1.61e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  301 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQH 380
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  381 LKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKAIEmrAYAGLGHAARCMQDLERAKQYHEQQ 460
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALSPDNPN--AYSNLAALLLSLGQDDEAKAALQRA 148


                   ....
gi 1981092192  461 LGIA 464
Cdd:COG5010    149 LGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
81-159 1.81e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 1.81e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192   81 YNEALAvDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKS 159
Cdd:COG4785     63 IDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
TPR_12 pfam13424
Tetratricopeptide repeat;
715-786 1.83e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 1.83e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  715 RALGNLGDIFICKKDINGAIKFYEQQLGLAHQV--KDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 786
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 581-744 1.92e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 1.92e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  581 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 660
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  661 LALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQ 740
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148


                   ....
gi 1981092192  741 LGLA 744
Cdd:COG5010    149 LGTS 152
TPR_7 pfam13176
Tetratricopeptide repeat;
959-994 1.98e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.38  E-value: 1.98e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1981092192  959 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 994
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-466 2.18e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  311 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelSEARELgnMGAVYIAMGDFENAVQCHEQHLKIAKDlgnk 390
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  391 reEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAED 466
Cdd:COG4783     71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 83-172 2.61e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.69  E-value: 2.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   83 EALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 162
Cdd:COG3914     69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148

                           90
                   ....*....|
gi 1981092192  163 LVGMVEAAMK 172
Cdd:COG3914    149 YLNLGEALRR 158
TPR_7 pfam13176
Tetratricopeptide repeat;
879-911 2.85e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.99  E-value: 2.85e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1981092192  879 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 911
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
483-589 3.16e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  483 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 562
Cdd:COG3063      1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1981092192  563 AYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
TPR_12 pfam13424
Tetratricopeptide repeat;
638-706 3.39e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 3.39e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981092192  638 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQS 706
Cdd:pfam13424    7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 851-960 3.92e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 3.92e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  851 EEAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAM 930
Cdd:COG1729     10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80

                           90       100       110
                   ....*....|....*....|....*....|
gi 1981092192  931 GSLQQALVCFEKrLVVAHELGEAFNKAQAY 960
Cdd:COG1729     81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
966-1190 4.47e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.30  E-value: 4.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  966 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQ--IAEETNNPTcQGRAYGNL 1043
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAerIDRALALPD-LAQLYYER 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1044 GLTYESLGTFERAVvyqeQHLSIAAQMN-DLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHG 1122
Cdd:COG4785     80 GVAYDSLGDYDLAI----ADFDQALELDpDLAE---AYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLN 146

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192 1123 LGLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1190
Cdd:COG4785    147 RGIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
TPR_12 pfam13424
Tetratricopeptide repeat;
434-506 4.59e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 4.59e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981092192  434 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 506
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 915-1019 5.15e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 5.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  915 DQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdra 994
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALALDPD----- 83

                           90       100
                   ....*....|....*....|....*
gi 1981092192  995 lESDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG4235     84 -NPEALYLLGLAAFQQGDYAEAIAA 107
TPR_12 pfam13424
Tetratricopeptide repeat;
1038-1109 5.75e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 5.75e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192 1038 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 1109
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
363-467 5.96e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 5.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  363 VYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvlelaqelmEKAIEM-----RAY 437
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL------------EKALKLdpnnaEAL 62

                           90       100       110
                   ....*....|....*....|....*....|
gi 1981092192  438 AGLGHAARCMQDLERAKQYHEQQLGIAEDL 467
Cdd:COG3063     63 LNLAELLLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
101-190 6.08e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 6.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  101 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALaAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 180
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|
gi 1981092192  181 PTYQQLQKMK 190
Cdd:COG3063     80 AYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
606-707 6.45e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 6.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  606 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 685
Cdd:COG3063      4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70

                           90       100
                   ....*....|....*....|..
gi 1981092192  686 ALLNFSKAEECQKYLLSLAQSL 707
Cdd:COG3063     71 ELGDYDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
878-909 6.84e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 6.84e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1981092192  878 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
878-909 1.01e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 44.31  E-value: 1.01e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1981092192  878 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 909
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
274-346 1.11e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 1.11e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981092192  274 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 346
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 907-1067 1.22e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 1.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  907 AQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI 986
Cdd:COG5010      4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  987 ARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEetNNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSI 1066
Cdd:COG5010     84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP--DNP----NAYSNLAALLLSLGQDDEAKAALQRALGT 151


                   .
gi 1981092192 1067 A 1067
Cdd:COG5010    152 S 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 851-944 1.65e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  851 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAM 930
Cdd:COG5010     71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALA------LSPDNPNAYSNLAALLLSL 135

                           90
                   ....*....|....
gi 1981092192  931 GSLQQALVCFEKRL 944
Cdd:COG5010    136 GQDDEAKAALQRAL 149
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 661-823 1.70e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  661 LALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 740
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  741 LGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQ 820
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                   ...
gi 1981092192  821 LDL 823
Cdd:COG5010    149 LGT 151
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 804-905 1.73e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 1.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  804 YMALGKYTMAFKCYEEQLdlgQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDrgrAYGNL 883
Cdd:COG1729      3 LLKAGDYDEAIAAFKAFL---KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPD---ALLKL 73

                           90       100
                   ....*....|....*....|..
gi 1981092192  884 GDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG1729     74 GLSYLELGDYDKARATLEELIK 95
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1006-1110 1.81e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 1.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1006 VYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLAAktvsYSSLGR 1085
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67

                           90       100
                   ....*....|....*....|....*
gi 1981092192 1086 THHALQNYSQAVMYLQEGLRLAEQL 1110
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 873-1027 1.96e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 1.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  873 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGE 952
Cdd:COG5010     10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQLDP 85

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981092192  953 afNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 1027
Cdd:COG5010     86 --NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 878-902 2.25e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 2.25e-05
                            10        20
                    ....*....|....*....|....*
gi 1981092192   878 RAYGNLGDCYEALGDYEEAIKYYEQ 902
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR_7 pfam13176
Tetratricopeptide repeat;
596-631 2.54e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 43.30  E-value: 2.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1981092192  596 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 631
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
COG3899 COG3899
Predicted ATPase [General function prediction only];
947-1208 2.59e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.86  E-value: 2.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  947 AHELGEAfnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhqldlqi 1026
Cdd:COG3899    698 AGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL------- 767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1027 aeetnnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHhaLQNYSQAVMYLQEGLRL 1106
Cdd:COG3899    768 --------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGELALAL 819

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1107 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETI-----RHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1181
Cdd:COG3899    820 AERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETgdaalALLALAAAAAAAAAAAALAAAAAAAARLLAA 899

                          250       260
                   ....*....|....*....|....*..
gi 1981092192 1182 LGHHDEALAVAERGRTRAFADLLVERQ 1208
Cdd:COG3899    900 AAAALAAAAAAAALAAAELARLAAAAA 926
TPR_12 pfam13424
Tetratricopeptide repeat;
754-826 2.75e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 2.75e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981092192  754 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQK 826
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
392-466 3.25e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 3.25e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  392 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELM--EKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 466
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PHA03378 PHA03378
EBNA-3B; Provisional
 2102-2408 3.44e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 49.30  E-value: 3.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2102 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2175
Cdd:PHA03378   520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2176 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2247
Cdd:PHA03378   597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2248 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2316
Cdd:PHA03378   671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2317 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2396
Cdd:PHA03378   746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                          330
                   ....*....|..
gi 1981092192 2397 EEGVDKLELKEL 2408
Cdd:PHA03378   817 QQGPTKQILRQL 828
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
875-1025 3.48e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.60  E-value: 3.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  875 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRAMGSLQQALvcfekrlvvahelgEAF 954
Cdd:COG4785     71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAAL--------------EDF 130

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  955 NKA--------QAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL-------ESDAACGL-------GGVYQQMGE 1012
Cdd:COG4785    131 DRAleldpdyaYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALwlylaerKLDPEKALallledwATAYLLQGD 210

                          170
                   ....*....|...
gi 1981092192 1013 YDTALQYHQLDLQ 1025
Cdd:COG4785    211 TEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
727-827 3.73e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 3.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  727 KKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 806
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71

                           90       100
                   ....*....|....*....|.
gi 1981092192  807 LGKYTMAFKCYEEQLDLGQKL 827
Cdd:COG3063     72 LGDYDEALAYLERALELDPSA 92
TPR_7 pfam13176
Tetratricopeptide repeat;
357-390 4.45e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.53  E-value: 4.45e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1981092192  357 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNK 390
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 2090-2319 4.50e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 49.00  E-value: 4.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2090 SSKGSISTPNSPVKMTlIPSPNSPFQKVGKLASSDTGESDQSSTETDstvKSQEESNPKlDPQE------LAQKILEETQ 2163
Cdd:pfam03154   57 SKAESMKKSSKKIKEE-APSPLKSAKRQREKGASDTEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGS 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2164 SHLIAVERLQRSGGQVSKSnnPEDGVQAPSSTAVFRASETSAfsrPVLSHQKSQPSPVTVKPKPPARSSSLPKVSSGYSS 2243
Cdd:pfam03154  132 SDPKDIDQDNRSTSPSIPS--PQDNESDSDSSAQQQILQTQP---PVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192 2244 PTTSEMSIKDSPSQHSGRPSP-GCDSQTSQLDQPlfKLKYPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYS 2319
Cdd:pfam03154  207 PPQGSPATSQPPNQTQSTAAPhTLIQQTPTLHPQ--RLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHS 281
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
647-744 6.02e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 6.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  647 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEECQKyllslAQSLNNSQAkfRALGNLGDIFIC 726
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71

                           90
                   ....*....|....*...
gi 1981092192  727 KKDINGAIKFYEQQLGLA 744
Cdd:COG3063     72 LGDYDEALAYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
851-944 6.39e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 6.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  851 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRAM 930
Cdd:COG3063      9 EEAEEYYEKALELDP---------DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLEL 72

                           90
                   ....*....|....
gi 1981092192  931 GSLQQALVCFEKRL 944
Cdd:COG3063     73 GDYDEALAYLERAL 86
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 373-496 8.02e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 8.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  373 AVQCHEQHLKiakdlgNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLER 452
Cdd:COG4235      2 AIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEE 69

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1981092192  453 AKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKL 496
Cdd:COG4235     70 AEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1016-1195 8.17e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 8.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1016 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsYSSLGRTHHALQNYSQ 1095
Cdd:COG3914     21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1096 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1175
Cdd:COG3914     97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152

                          170       180
                   ....*....|....*....|
gi 1981092192 1176 QRVLVSLGHHDEALAVAERG 1195
Cdd:COG3914    153 GEALRRLGRLEEAIAALRRA 172
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 77-185 8.34e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 8.34e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   77 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 156
Cdd:COG5010     39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118

                           90       100
                   ....*....|....*....|....*....
gi 1981092192  157 PKSLQLLVGMVEAAMKSPMRDSLEPTYQQ 185
Cdd:COG5010    119 PDNPNAYSNLAALLLSLGQDDEAKAALQR 147
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 359-472 8.83e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 8.83e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  359 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKamsyhnyvlelAQELMEKAIEM---- 434
Cdd:COG4235     22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEE-----------AEELLERALALdpdn 84

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1981092192  435 -RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 472
Cdd:COG4235     85 pEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 612-744 9.82e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 9.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  612 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFS 691
Cdd:COG4235      1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  692 KAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQLGLA 744
Cdd:COG4235     69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 316-434 1.04e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 1.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEAR 395
Cdd:COG4235     19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLERALALDPD------NPE 86

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1981092192  396 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQE-----LMEKAIEM 434
Cdd:COG4235     87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAdaparLLEASIAE 130
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 65-143 1.11e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.05  E-value: 1.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   65 SNQAchDGDFHTAIVLYNEALAV--DP--QNCILYsNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLG 140
Cdd:PRK02603    44 SAQA--DGEYAEALENYEEALKLeeDPndRSYILY-NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120


                   ...
gi 1981092192  141 RHA 143
Cdd:PRK02603   121 EKA 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
323-429 1.34e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  323 VYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQChEQHLKIAKDlgnkreEARAYSNLGS 402
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1981092192  403 AYHYRRNFDKAMSYHNYVLELAQELME 429
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2057-2332 1.37e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 1.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2057 EPLATYQENRNTCFSPDHKQ-PQPGTAGgmrvSVSSKGSISTPNSPVkmtliPSPNSPFQKVGKLASSDTGESDQSSTET 2135
Cdd:PHA03307    85 RSTPTWSLSTLAPASPAREGsPTPPGPS----SPDPPPPTPPPASPP-----PSPAPDLSEMLRPVGSPGPPPAASPPAA 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2136 DStVKSQEESNPKlDPQELAqkileetqSHLIAVERLQRSGGQVSKSNnpedgvqaPSSTAVFRASETSAFSRPVLSHQK 2215
Cdd:PHA03307   156 GA-SPAAVASDAA-SSRQAA--------LPLSSPEETARAPSSPPAEP--------PPSTPPAAASPRPPRRSSPISASA 217

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2216 SQPSPVtvkpkpPARSSSLPKVSSGYSSPTTSEMSIKDSPSQHSGRPSPGCDSQTSQLDQPLFKLKYPS--SPYSAHISK 2293
Cdd:PHA03307   218 SSPAPA------PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSrpGPASSSSSP 291

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1981092192 2294 SPRNMSPSSGHqSPAGSAPSPALSYSSAGSARSSPADAP 2332
Cdd:PHA03307   292 RERSPSPSPSS-PGSGPAPSSPRASSSSSSSRESSSSST 329
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 71-159 1.42e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 1.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   71 DGDFHTAIVLYNEALAVDPQNCIL---YSNRSAAYMKIQQYDKALD---DAIKARLLNPKWPKAYFRQGVALQYLGRHAD 144
Cdd:COG1729      6 AGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEafeKLLKRYPDSPKAPDALLKLGLSYLELGDYDK 85

                           90
                   ....*....|....*
gi 1981092192  145 ALAAFASGLAQDPKS 159
Cdd:COG1729     86 ARATLEELIKKYPDS 100
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
447-544 1.46e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  447 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 526
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71

                           90
                   ....*....|....*...
gi 1981092192  527 LGMYDQAVKYHRQELQIS 544
Cdd:COG3063     72 LGDYDEALAYLERALELD 89
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
72-170 1.50e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVAlQYLGRHADALAAfas 151
Cdd:COG4785    121 GDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALAL--- 196

                           90
                   ....*....|....*....
gi 1981092192  152 gLAQDPKSLQLLVGMVEAA 170
Cdd:COG4785    197 -LLEDWATAYLLQGDTEEA 214
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 350-666 1.52e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.44  E-value: 1.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  350 ELSEARELGNMGAVYIA--MGDFENAvqchEQHLKIAKDLGNKREEARAYSnLGSAYHYRRNFDKAmsyhnyvLELAQEL 427
Cdd:COG3071     44 EHSEAPLLAYLLAARAAqaLGDYERR----DEYLAQALELAPEAELAVLLT-RAELLLDQGQAEQA-------LATLEAL 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  428 MEKA--------IEMRAYAGLGH---AARCMQDLERAKQYHEQQlgiAEDLKDRAAEGRassnlgiIHQMKGDYDtALKL 496
Cdd:COG3071    112 RAGAprhpqvlrLLLQAYRQLGDweeLLELLPALRKHKALSAEE---AQALERRAYLGL-------LRQAARDAE-ALKA 180

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  497 HKTHLCIAQELSDYAAQGRAygnmgNAYNALGMYDQAvkyhRQELQismevndRASQASTHGNLAVAYQALGAHD--RAL 574
Cdd:COG3071    181 LWKALPRAERRDPELAAAYA-----RALIALGDHDEA----ERLLR-------EALKRQWDPRLVRLYGRLQGGDpaKQL 244

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  575 QHYQNHLniARELRDiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkvCHNLGYAHYCLGNYQEAV 654
Cdd:COG3071    245 KRAEKWL--KKHPND----PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEA-------YAELARLLEQLGDPEEAA 311

                          330
                   ....*....|..
gi 1981092192  655 KYYEQDLALAKD 666
Cdd:COG3071    312 EHYRKALALALG 323
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 475-683 1.75e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.22  E-value: 1.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  475 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 549
Cdd:NF040586   521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  550 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 624
Cdd:NF040586   601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  625 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 683
Cdd:NF040586   671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 635-666 1.76e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 1.76e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1981092192  635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
361-498 1.85e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.29  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  361 GAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLEL----AQELMEKAIemrA 436
Cdd:COG4785     80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALELdpdyAYAYLNRGI---A 150

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192  437 YAGLGHAARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 498
Cdd:COG4785    151 LYYLGRYELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
COG3899 COG3899
Predicted ATPase [General function prediction only];
203-615 1.89e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.16  E-value: 1.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  203 GQELLTAGHHGASVVVLEAALK----IGTCSLKL---RGSVFSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 275
Cdd:COG3899    752 AEALYLAGRFEEAEALLERALAaralAALAALRHgnpPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  276 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGhvyTAIGDYPNALASHKQCVLLAKQSKDELSEAR 355
Cdd:COG3899    832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAA---AAAAAAAALAAAAAAAARLLAAAAAALAAAA 908

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  356 ELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRnFDKAMSYHNYVLELAQELMEKAIEMR 435
Cdd:COG3899    909 AAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALA-AAAAAAAAAALAAAAAAAAAAAAAAA 987

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  436 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 515
Cdd:COG3899    988 AAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAA 1067

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAY---QALGAHDRALQHYQNHLNIARELRDIQS 592
Cdd:COG3899   1068 LLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALaaaLAALALAAAARAAAALLLLAAALALALA 1147

                          410       420
                   ....*....|....*....|...
gi 1981092192  593 EARALSNLGNFHCSRGEYVQAAP 615
Cdd:COG3899   1148 ALLLLAALLLALALLLLALAALA 1170
TPR_7 pfam13176
Tetratricopeptide repeat;
516-551 2.66e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.22  E-value: 2.66e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1981092192  516 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 551
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 878-905 3.64e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.81  E-value: 3.64e-04
                           10        20
                   ....*....|....*....|....*...
gi 1981092192  878 RAYGNLGDCYEALGDYEEAIKYYEQYLS 905
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
833-984 4.52e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 4.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  833 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYlsvaqsLNR 912
Cdd:COG4785     72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDP---------DLAEAYNNRGLAYLLLGDYDAALEDFDRA------LEL 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  913 MQDQAKAYRGLGNGHRAMGSLQQALVCFEK----------RLVVAHELGEAFNKAQAYGEL----GSLHSQLGNYEQAIS 978
Cdd:COG4785    137 DPDYAYAYLNRGIALYYLGRYELAIADLEKaleldpndpeRALWLYLAERKLDPEKALALLledwATAYLLQGDTEEARE 216


                   ....*.
gi 1981092192  979 CLERQL 984
Cdd:COG4785    217 LFKLAL 222
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 891-982 5.05e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 5.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  891 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRAMGSLQQALVCFEKrlvVAHELGEAFNKAQAYGELGSLHSQL 970
Cdd:COG1729      7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80

                           90
                   ....*....|..
gi 1981092192  971 GNYEQAISCLER 982
Cdd:COG1729     81 GDYDKARATLEE 92
TPR_8 pfam13181
Tetratricopeptide repeat;
957-989 5.12e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.30  E-value: 5.12e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1981092192  957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 989
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
479-589 5.23e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 5.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  479 NLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVkyhrQELQISMEVNDRASQAstHG 558
Cdd:COG4785     78 ERGVAYDSLGDYDLAIAD------FDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----EDFDRALELDPDYAYA--YL 145

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1981092192  559 NLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:COG4785    146 NRGIALYYLGRYELAIADLEKALELDPNDPE 176
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 635-666 5.74e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 5.74e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1981092192   635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 851-987 6.01e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 6.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  851 EEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAM 930
Cdd:COG5010     35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192  931 GSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 987
Cdd:COG5010    102 GDKDEAKEYYEK----ALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1016-1143 6.80e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 6.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1016 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQ 1095
Cdd:COG5010     33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1981092192 1096 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 1143
Cdd:COG5010    107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 309-588 7.41e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 44.22  E-value: 7.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  309 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLG 388
Cdd:pfam17874   35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  389 NKREEA--RAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 465
Cdd:pfam17874  115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ-WEPDAAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  466 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 539
Cdd:pfam17874  194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1981092192  540 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 588
Cdd:pfam17874  260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1008-1140 1.15e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1008 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1087
Cdd:PRK02603    46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1088 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1140
Cdd:PRK02603   108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 957-990 1.19e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.19e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1981092192   957 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 990
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 394-426 1.20e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.20e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1981092192   394 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 426
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 878-1206 1.20e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.14  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  878 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 943
Cdd:NF040586   435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  944 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 1014
Cdd:NF040586   505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1015 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 1077
Cdd:NF040586   580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 1078 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1148
Cdd:NF040586   656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1981092192 1149 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1206
Cdd:NF040586   720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 467-600 1.27e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 1.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  467 LKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQISme 546
Cdd:COG4235     10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALD-- 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  547 vndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 600
Cdd:COG4235     82 ----PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-163 1.54e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 1.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   72 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 151
Cdd:COG0457    124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203

                           90
                   ....*....|..
gi 1981092192  152 GLAQDPKSLQLL 163
Cdd:COG0457    204 EQALRKKLAILT 215
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 505-626 1.65e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 1.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  505 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 576
Cdd:PRK11447   294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1981092192  577 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:PRK11447   374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
Nup153 pfam08604
Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and ...
 2203-2327 1.67e-03

Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and Nup154 from fission yeast. These have been demonstrated to be functionally equivalent.


Pssm-ID: 462533 [Multi-domain]  Cd Length: 507  Bit Score: 43.72  E-value: 1.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2203 TSAFSRPVL--SHQKSQPSPVTVKPKPPARSSSLPKVSSGYSspTTSEmsIKDSPSQHSG---RPSPGCDSQTSQLDQPL 2277
Cdd:pfam08604   11 QDVLTRPSLhrSHLNFTVLDSPALFCQPSTSTAFPIGSSGFS--LVKE--IKDSTSQHDDdniSTTSGFSSRASDKDIPV 86

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1981092192 2278 fklkypSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSS 2327
Cdd:pfam08604   87 ------SKTVSLPLLWSPEAERSHSLSQHSASSSKKPAFNLSAFGTLSPS 130
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 515-539 1.94e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 1.94e-03
                            10        20
                    ....*....|....*....|....*
gi 1981092192   515 RAYGNMGNAYNALGMYDQAVKYHRQ 539
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
519-624 2.04e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.18  E-value: 2.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  519 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 593
Cdd:COG4700     94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1981092192  594 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 624
Cdd:COG4700    160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 73-149 2.19e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.98  E-value: 2.19e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981092192   73 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 149
Cdd:NF040959   120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 957-1019 2.33e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 2.33e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981092192  957 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 1019
Cdd:COG1729     30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
TPR_1 pfam00515
Tetratricopeptide repeat;
594-626 2.38e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 2.38e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1981092192  594 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 626
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 652-776 2.60e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 2.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  652 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAkfraLGNLGDIFICKKDIN 731
Cdd:COG4235      1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1981092192  732 GAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGY 776
Cdd:COG4235     69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 737-862 2.78e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 2.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  737 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKC 816
Cdd:COG5010     37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD------PNNPELYYNLALLYSRSGDKDEAKEY 110

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1981092192  817 YEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLA 862
Cdd:COG5010    111 YEKALAL-----SPD-NPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 354-386 2.94e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 2.94e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1981092192   354 ARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 386
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
515-543 3.08e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 3.08e-03
                           10        20
                   ....*....|....*....|....*....
gi 1981092192  515 RAYGNMGNAYNALGMYDQAVKYHRQELQI 543
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 562-659 3.15e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 3.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  562 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 641
Cdd:COG1729      1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74

                           90
                   ....*....|....*...
gi 1981092192  642 YAHYCLGNYQEAVKYYEQ 659
Cdd:COG1729     75 LSYLELGDYDKARATLEE 92
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
699-905 3.35e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 3.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  699 YLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRR----------------LEASAYAALGT 762
Cdd:COG4785      2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAaaalaaeridralalpDLAQLYYERGV 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  763 AYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGI 842
Cdd:COG4785     82 AYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALEL-----DPDY-AYAYLNRGI 149

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  843 TKMNMNVMEEAIGYFEQQLAMLQQ-------LSGNESVLDRGRAYGNL----GDCYEALGDYEEAIKYYEQYLS 905
Cdd:COG4785    150 ALYYLGRYELAIADLEKALELDPNdperalwLYLAERKLDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 110-225 3.53e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  110 KALDDAIKArllNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkM 189
Cdd:COG4235      4 ARLRQALAA---NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA--L 78

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1981092192  190 KLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKI 225
Cdd:COG4235     79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
ycf3 CHL00033
photosystem I assembly protein Ycf3
 550-664 3.74e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.38  E-value: 3.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  550 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 628
Cdd:CHL00033    31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1981092192  629 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 664
Cdd:CHL00033   108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
ycf3 CHL00033
photosystem I assembly protein Ycf3
 485-626 3.99e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.38  E-value: 3.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  485 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 562
Cdd:CHL00033    46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981092192  563 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 626
Cdd:CHL00033   115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
TPR_1 pfam00515
Tetratricopeptide repeat;
635-666 4.39e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.39e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1981092192  635 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 666
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 751-907 4.63e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.82  E-value: 4.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  751 RLEASAYAALG---TAYRMIQKYDKALGYHTQELE-----VYQEL---------------SDLPGECRAHGHLAAVY--- 804
Cdd:COG3071    123 RLLLQAYRQLGdweELLELLPALRKHKALSAEEAQalerrAYLGLlrqaardaealkalwKALPRAERRDPELAAAYara 202

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192  805 -MALGKYTMAFKCYEEQLDLGQklkDPSLeAQVYGNMGITKMnmnvmEEAIGYFEQ----------------QLAMLQQL 867
Cdd:COG3071    203 lIALGDHDEAERLLREALKRQW---DPRL-VRLYGRLQGGDP-----AKQLKRAEKwlkkhpndpdlllalgRLCLRNQL 273

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1981092192  868 SGN-----ESVL---DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 907
Cdd:COG3071    274 WGKareylEAALalrPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
TPR_7 pfam13176
Tetratricopeptide repeat;
556-589 4.69e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.75  E-value: 4.69e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1981092192  556 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 589
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
TPR_10 pfam13374
Tetratricopeptide repeat;
638-668 5.16e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.71  E-value: 5.16e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1981092192  638 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 668
Cdd:pfam13374    6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
TPR_12 pfam13424
Tetratricopeptide repeat;
92-154 5.65e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 5.65e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981092192   92 CILYSNRSAAYMKIQQYDKALDDAIKA-----RLLNPKWPK---AYFRQGVALQYLGRHADALAAFASGLA 154
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKAleiarRLLGPDHPLtatTLLNLGRLYLELGRYEEALELLERALA 73
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
81-166 7.17e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.28  E-value: 7.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981092192   81 YNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSL 160
Cdd:COG4785     28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA 107


                   ....*.
gi 1981092192  161 QLLVGM 166
Cdd:COG4785    108 EAYNNR 113
TPR_7 pfam13176
Tetratricopeptide repeat;
316-350 7.53e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.98  E-value: 7.53e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1981092192  316 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDE 350
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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