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pre-mRNA-processing factor 40 homolog A isoform 15 [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||||||
PRP40 super family | cl34905 | Splicing factor [RNA processing and modification]; |
298-716 | 1.85e-31 | |||||||
Splicing factor [RNA processing and modification]; The actual alignment was detected with superfamily member COG5104: Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 130.97 E-value: 1.85e-31
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
104-134 | 1.04e-08 | |||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. : Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 51.37 E-value: 1.04e-08
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PHA03255 super family | cl31530 | BDLF3; Provisional |
165-307 | 1.68e-04 | |||||||
BDLF3; Provisional The actual alignment was detected with superfamily member PHA03255: Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 44.12 E-value: 1.68e-04
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Name | Accession | Description | Interval | E-value | |||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
298-716 | 1.85e-31 | |||||||
Splicing factor [RNA processing and modification]; Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 130.97 E-value: 1.85e-31
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
315-364 | 7.79e-15 | |||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 69.02 E-value: 7.79e-15
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
314-367 | 1.11e-09 | |||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 54.89 E-value: 1.11e-09
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
104-134 | 1.04e-08 | |||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 51.37 E-value: 1.04e-08
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
103-134 | 1.09e-08 | |||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 51.45 E-value: 1.09e-08
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
106-132 | 3.88e-08 | |||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 459800 [Multi-domain] Cd Length: 30 Bit Score: 49.81 E-value: 3.88e-08
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PHA03255 | PHA03255 | BDLF3; Provisional |
165-307 | 1.68e-04 | |||||||
BDLF3; Provisional Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 44.12 E-value: 1.68e-04
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alt | PHA02566 | ADP-ribosyltransferase; Provisional |
273-478 | 3.56e-03 | |||||||
ADP-ribosyltransferase; Provisional Pssm-ID: 222881 [Multi-domain] Cd Length: 684 Bit Score: 40.88 E-value: 3.56e-03
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Name | Accession | Description | Interval | E-value | |||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
298-716 | 1.85e-31 | |||||||
Splicing factor [RNA processing and modification]; Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 130.97 E-value: 1.85e-31
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
315-364 | 7.79e-15 | |||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 69.02 E-value: 7.79e-15
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
314-367 | 1.11e-09 | |||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 54.89 E-value: 1.11e-09
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
104-134 | 1.04e-08 | |||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 51.37 E-value: 1.04e-08
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
103-134 | 1.09e-08 | |||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 51.45 E-value: 1.09e-08
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
664-718 | 2.01e-08 | |||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 51.04 E-value: 2.01e-08
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
106-132 | 3.88e-08 | |||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 459800 [Multi-domain] Cd Length: 30 Bit Score: 49.81 E-value: 3.88e-08
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
448-507 | 2.36e-06 | |||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 45.26 E-value: 2.36e-06
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
665-716 | 1.64e-05 | |||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 42.83 E-value: 1.64e-05
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PHA03255 | PHA03255 | BDLF3; Provisional |
165-307 | 1.68e-04 | |||||||
BDLF3; Provisional Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 44.12 E-value: 1.68e-04
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
532-584 | 5.82e-04 | |||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 38.59 E-value: 5.82e-04
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alt | PHA02566 | ADP-ribosyltransferase; Provisional |
273-478 | 3.56e-03 | |||||||
ADP-ribosyltransferase; Provisional Pssm-ID: 222881 [Multi-domain] Cd Length: 684 Bit Score: 40.88 E-value: 3.56e-03
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Blast search parameters | ||||
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