NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1017029567|ref|NP_002196|]
View 

integrin alpha-5 precursor [Homo sapiens]

Protein Classification

integrin alpha( domain architecture ID 12192630)

integrin alpha forms a heterodimer with integrin beta to mediate cell-extracellular matrix and cell-cell interactions; integrin alpha is a component of integrin, a cell adhesion molecule that mediates cell-extracellular matrix and cell-cell interactions

CATH:  2.130.10.130|2.60.40.1510|2.60.40.1530|2.60.40.1460
Gene Ontology:  GO:0007155|GO:0008305|GO:0005178|GO:0046872
PubMed:  3028640|2199285|12297042|12826403|14689578|12361595|12234368
SCOP:  4003137

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 490-921 0e+00

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


:

Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 560.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  490 RPIVSASASLTIFPAMFNPEERSCSLEGNPVACINLSFCLNASGKHV-ADSIGFTVELQLDWQKQKGGVRRALFLASRQA 568
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLTGTPVSCFTVRACFSYTGKPIpNPSLVLNYELELDRQKKKGLPPRVLFLDSQQP 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  569 TLTQTLLIQNGAREDCREMKIYLRNEseFRDKLSPIHIALNFSL--DPQAPVDSHGLRPALHYQSKSRIEDKAQILLDCG 646
Cdd:pfam08441   81 SLTGTLVLLSQGRKVCRTTKAYLRDE--FRDKLSPIVISLNYSLrvDPRAPSDLPGLKPILDQNQPSTVQEQANFLKDCG 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  647 EDNICVPDLQLEVFGE----QNHVYLGDKNALNLTFHAQNVGEGgAYEAELRVTAPPEAEYSGlVRHPGNFSSLSCDYFA 722
Cdd:pfam08441  159 EDNVCVPDLQLSAKFDsresDEPLLLGDDNDLALEITVTNLGED-AYEAELYVTLPPGLDYSG-VRREGSEKQLSCTAKK 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  723 VNQSRLLVCDLGNPMKAGASLWGGLRFTVPHLRDTKKTIQFDFQILSKNLNNSQSDVVSFRLSVEAQAQVTLNGVSKPEA 802
Cdd:pfam08441  237 ENSTRQVVCDLGNPMKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVSLKVPVVAEAQLSLSGVSKPDQ 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  803 VLFPVSDWHPRDQPQKEEDLGPAVHHVYELINQGPSSISQGVLELSCPQAL-EGQQLLYVTRVTG---LNCTTNHPINPK 878
Cdd:pfam08441  317 VVGGSVKGESAMKPRSEEDIGPLVEHTYEVINNGPSTVSGASLEISWPYELsNGKWLLYLLDVQGqgkGECSPQNEINPL 396

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1017029567  879 GLELDPEGSL-------HHQQKREAPSRS--SASSGPQILKCPE-AECFRLRC 921
Cdd:pfam08441  397 NLTQSLESSKplrtsrvHHVVKRRDVLKSekATQTASVLLSCDSgARCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 389-443 3.43e-14

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 67.79  E-value: 3.43e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1017029567   389 FGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQ-QGVVFVFPGGPGGLGSKPSQVL 443
Cdd:smart00191    2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGeTGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 322-379 1.34e-12

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 63.16  E-value: 1.34e-12
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 1017029567   322 MASYFGYAVA-ATDVNGDGLDDLLVGAPLlmdrtpDGRPQEVGRVYVYLQHPAGIEPTP 379
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAPR------ANDAGETGAVYVYFGSSGGGNSIP 53
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 56-114 3.74e-08

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 50.84  E-value: 3.74e-08
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017029567    56 PGSFFGFSVEFYRPGT-DGV-SVLVGAPKANTSQpgvlQGGAVYLCPWGASPTQCTPIEFD 114
Cdd:smart00191    1 PGSYFGYSVAGVGDVNgDGYpDLLVGAPRANDAG----ETGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 455-498 1.14e-05

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 43.90  E-value: 1.14e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 1017029567   455 FFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASAS 498
Cdd:smart00191    4 YFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSG 47
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 268-310 8.53e-05

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 41.21  E-value: 8.53e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 1017029567   268 DDSYLGYSVA-VGEFSGDDTEDFVAGVPKGN--LTYGYVTILNGSD 310
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAPRANdaGETGAVYVYFGSS 46
 
Name Accession Description Interval E-value
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 490-921 0e+00

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 560.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  490 RPIVSASASLTIFPAMFNPEERSCSLEGNPVACINLSFCLNASGKHV-ADSIGFTVELQLDWQKQKGGVRRALFLASRQA 568
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLTGTPVSCFTVRACFSYTGKPIpNPSLVLNYELELDRQKKKGLPPRVLFLDSQQP 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  569 TLTQTLLIQNGAREDCREMKIYLRNEseFRDKLSPIHIALNFSL--DPQAPVDSHGLRPALHYQSKSRIEDKAQILLDCG 646
Cdd:pfam08441   81 SLTGTLVLLSQGRKVCRTTKAYLRDE--FRDKLSPIVISLNYSLrvDPRAPSDLPGLKPILDQNQPSTVQEQANFLKDCG 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  647 EDNICVPDLQLEVFGE----QNHVYLGDKNALNLTFHAQNVGEGgAYEAELRVTAPPEAEYSGlVRHPGNFSSLSCDYFA 722
Cdd:pfam08441  159 EDNVCVPDLQLSAKFDsresDEPLLLGDDNDLALEITVTNLGED-AYEAELYVTLPPGLDYSG-VRREGSEKQLSCTAKK 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  723 VNQSRLLVCDLGNPMKAGASLWGGLRFTVPHLRDTKKTIQFDFQILSKNLNNSQSDVVSFRLSVEAQAQVTLNGVSKPEA 802
Cdd:pfam08441  237 ENSTRQVVCDLGNPMKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVSLKVPVVAEAQLSLSGVSKPDQ 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  803 VLFPVSDWHPRDQPQKEEDLGPAVHHVYELINQGPSSISQGVLELSCPQAL-EGQQLLYVTRVTG---LNCTTNHPINPK 878
Cdd:pfam08441  317 VVGGSVKGESAMKPRSEEDIGPLVEHTYEVINNGPSTVSGASLEISWPYELsNGKWLLYLLDVQGqgkGECSPQNEINPL 396

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1017029567  879 GLELDPEGSL-------HHQQKREAPSRS--SASSGPQILKCPE-AECFRLRC 921
Cdd:pfam08441  397 NLTQSLESSKplrtsrvHHVVKRRDVLKSekATQTASVLLSCDSgARCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 389-443 3.43e-14

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 67.79  E-value: 3.43e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1017029567   389 FGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQ-QGVVFVFPGGPGGLGSKPSQVL 443
Cdd:smart00191    2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGeTGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 322-379 1.34e-12

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 63.16  E-value: 1.34e-12
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 1017029567   322 MASYFGYAVA-ATDVNGDGLDDLLVGAPLlmdrtpDGRPQEVGRVYVYLQHPAGIEPTP 379
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAPR------ANDAGETGAVYVYFGSSGGGNSIP 53
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 326-368 1.00e-09

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 54.44  E-value: 1.00e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1017029567  326 FGYAVAATDVNGDGLDDLLVGAPLlmdrtpdGRPQEVGRVYVY 368
Cdd:pfam01839    1 FGYSVAVGDLNGDGYADLAVGAPG-------EGGAGAGAVYVL 36
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 392-428 1.58e-08

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 50.97  E-value: 1.58e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1017029567  392 FGSSLTpLGDLDQDGYNDVAIGAPFGGETQQGVVFVF 428
Cdd:pfam01839    1 FGYSVA-VGDLNGDGYADLAVGAPGEGGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 56-114 3.74e-08

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 50.84  E-value: 3.74e-08
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017029567    56 PGSFFGFSVEFYRPGT-DGV-SVLVGAPKANTSQpgvlQGGAVYLCPWGASPTQCTPIEFD 114
Cdd:smart00191    1 PGSYFGYSVAGVGDVNgDGYpDLLVGAPRANDAG----ETGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 455-498 1.14e-05

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 43.90  E-value: 1.14e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 1017029567   455 FFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASAS 498
Cdd:smart00191    4 YFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSG 47
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 268-310 8.53e-05

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 41.21  E-value: 8.53e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 1017029567   268 DDSYLGYSVA-VGEFSGDDTEDFVAGVPKGN--LTYGYVTILNGSD 310
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAPRANdaGETGAVYVYFGSS 46
 
Name Accession Description Interval E-value
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 490-921 0e+00

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 560.40  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  490 RPIVSASASLTIFPAMFNPEERSCSLEGNPVACINLSFCLNASGKHV-ADSIGFTVELQLDWQKQKGGVRRALFLASRQA 568
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLTGTPVSCFTVRACFSYTGKPIpNPSLVLNYELELDRQKKKGLPPRVLFLDSQQP 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  569 TLTQTLLIQNGAREDCREMKIYLRNEseFRDKLSPIHIALNFSL--DPQAPVDSHGLRPALHYQSKSRIEDKAQILLDCG 646
Cdd:pfam08441   81 SLTGTLVLLSQGRKVCRTTKAYLRDE--FRDKLSPIVISLNYSLrvDPRAPSDLPGLKPILDQNQPSTVQEQANFLKDCG 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  647 EDNICVPDLQLEVFGE----QNHVYLGDKNALNLTFHAQNVGEGgAYEAELRVTAPPEAEYSGlVRHPGNFSSLSCDYFA 722
Cdd:pfam08441  159 EDNVCVPDLQLSAKFDsresDEPLLLGDDNDLALEITVTNLGED-AYEAELYVTLPPGLDYSG-VRREGSEKQLSCTAKK 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  723 VNQSRLLVCDLGNPMKAGASLWGGLRFTVPHLRDTKKTIQFDFQILSKNLNNSQSDVVSFRLSVEAQAQVTLNGVSKPEA 802
Cdd:pfam08441  237 ENSTRQVVCDLGNPMKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVSLKVPVVAEAQLSLSGVSKPDQ 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  803 VLFPVSDWHPRDQPQKEEDLGPAVHHVYELINQGPSSISQGVLELSCPQAL-EGQQLLYVTRVTG---LNCTTNHPINPK 878
Cdd:pfam08441  317 VVGGSVKGESAMKPRSEEDIGPLVEHTYEVINNGPSTVSGASLEISWPYELsNGKWLLYLLDVQGqgkGECSPQNEINPL 396

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1017029567  879 GLELDPEGSL-------HHQQKREAPSRS--SASSGPQILKCPE-AECFRLRC 921
Cdd:pfam08441  397 NLTQSLESSKplrtsrvHHVVKRRDVLKSekATQTASVLLSCDSgARCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 389-443 3.43e-14

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 67.79  E-value: 3.43e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1017029567   389 FGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQ-QGVVFVFPGGPGGLGSKPSQVL 443
Cdd:smart00191    2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGeTGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 322-379 1.34e-12

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 63.16  E-value: 1.34e-12
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*....
gi 1017029567   322 MASYFGYAVA-ATDVNGDGLDDLLVGAPLlmdrtpDGRPQEVGRVYVYLQHPAGIEPTP 379
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAPR------ANDAGETGAVYVYFGSSGGGNSIP 53
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 326-368 1.00e-09

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 54.44  E-value: 1.00e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1017029567  326 FGYAVAATDVNGDGLDDLLVGAPLlmdrtpdGRPQEVGRVYVY 368
Cdd:pfam01839    1 FGYSVAVGDLNGDGYADLAVGAPG-------EGGAGAGAVYVL 36
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 392-428 1.58e-08

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 50.97  E-value: 1.58e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1017029567  392 FGSSLTpLGDLDQDGYNDVAIGAPFGGETQQGVVFVF 428
Cdd:pfam01839    1 FGYSVA-VGDLNGDGYADLAVGAPGEGGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 56-114 3.74e-08

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 50.84  E-value: 3.74e-08
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017029567    56 PGSFFGFSVEFYRPGT-DGV-SVLVGAPKANTSQpgvlQGGAVYLCPWGASPTQCTPIEFD 114
Cdd:smart00191    1 PGSYFGYSVAGVGDVNgDGYpDLLVGAPRANDAG----ETGAVYVYFGSSGGGNSIPLQNL 57
FG-GAP_3 pfam13517
FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related ...
 334-412 2.59e-06

FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related proteins in which form a 7-fold repeat that adopts a beta-propeller fold. This repeat contains a putative calcium-binding site. These repeats are found in multiple proteins from eukaryotes and bacteria and mediate diverse biological processes at both molecular and cellular levels, such as cell-cell interactions, host-pathogen recognition or innate immune responses.


Pssm-ID: 433275 [Multi-domain]  Cd Length: 61  Bit Score: 45.68  E-value: 2.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017029567  334 DVNGDGLDDLLVGAPllmdrtpdgrpqevGRVYVYLQHPAGieptpTLTLTGHDEFGRFGSSLTP-LGDLDQDGYNDVAI 412
Cdd:pfam13517    1 DLDGDGKLDLVVAND--------------GGLRLYLNNGDG-----TFTFITSVSLGGGGGGLSVaVGDLDGDGRLDLLV 61
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 455-498 1.14e-05

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 43.90  E-value: 1.14e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 1017029567   455 FFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASAS 498
Cdd:smart00191    4 YFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSG 47
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 268-310 8.53e-05

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 41.21  E-value: 8.53e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 1017029567   268 DDSYLGYSVA-VGEFSGDDTEDFVAGVPKGN--LTYGYVTILNGSD 310
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAPRANdaGETGAVYVYFGSS 46
FG-GAP_3 pfam13517
FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related ...
 401-476 1.54e-03

FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related proteins in which form a 7-fold repeat that adopts a beta-propeller fold. This repeat contains a putative calcium-binding site. These repeats are found in multiple proteins from eukaryotes and bacteria and mediate diverse biological processes at both molecular and cellular levels, such as cell-cell interactions, host-pathogen recognition or innate immune responses.


Pssm-ID: 433275 [Multi-domain]  Cd Length: 61  Bit Score: 37.98  E-value: 1.54e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1017029567  401 DLDQDGYNDVAIGAPfggetqqGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFgsalrggrDLDGNGYPDLIV 476
Cdd:pfam13517    1 DLDGDGKLDLVVAND-------GGLRLYLNNGDGTFTFITSVSLGGGGGGLSVAVG--------DLDGDGRLDLLV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH