|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
668-1339 |
3.01e-26 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 117.46 E-value: 3.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 668 EDLQRRLEEFEGERERLQRMADSAAS----LEQQLEQVKLTLLQRDQQLEALQQEHL-------DLMKQLTLTQEALQSR 736
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAelqeLEEKLEELRLEVSELEEEIEELQKELYalaneisRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 737 EQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREE 816
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 817 LAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDqlISELKATRKRLDSELKELRQELMQVHGEKRT 896
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 897 AEAELSRLHREVAQVRQHMADLEGHLQSAQ----------KERDEMETHL----QSLQFDKEQMVAVTEA-NEALKKQIE 961
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallKNQSGLSGILgvlsELISVDEGYEAAIEAAlGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 962 ELQQEARKAITEQKQKM----------RRLGSDLTSAQKEMKTKHkayENAVGILSRRLQEALAAKEAADAELGQLR--- 1028
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNI---EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvd 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1029 --AQGGSSDSSLALHERI----------------QALEAELQAVSHSKTLLE-----KELQEVIALTSQELEESREKVLE 1085
Cdd:TIGR02168 630 dlDNALELAKKLRPGYRIvtldgdlvrpggvitgGSAKTNSSILERRREIEEleekiEELEEKIAELEKALAELRKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1086 LEDEL-----------QESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNL 1154
Cdd:TIGR02168 710 LEEELeqlrkeleelsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1155 QVQAVLQRKEEEDRQmkhlVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQ 1234
Cdd:TIGR02168 790 QIEQLKEELKALREA----LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1235 AEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLD-LTEQ- 1312
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnLQERl 945
|
730 740
....*....|....*....|....*....
gi 30089940 1313 --QGRKELEGLQQLLQNVKSELEMAQEDL 1339
Cdd:TIGR02168 946 seEYSLTLEEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
646-1197 |
3.00e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 104.25 E-value: 3.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 646 EADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 725
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEE-LEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 726 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEE 805
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 806 TSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ 885
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 886 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQF---------------------DKE 944
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalllaglrglagavavligveAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 945 QMVAVTEANEALKKQIEELQQEARKAITEQKQKmrrlgsDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAEL 1024
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAA------KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1025 GQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRgfrkkIKRLE 1104
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-----LEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1105 ESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKE 1184
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 30089940 1185 KEKVNSLKEQVAA 1197
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
633-1340 |
1.68e-21 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 102.07 E-value: 1.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 633 KEKGRIAAQLQGIEADMLDQEAAFMQI-QEAKTMVEED---LQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQR 708
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEqlrVKEKIGELEAEIASLER---SIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 709 DQQLEALQQEHLDLmkqltltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSG 788
Cdd:TIGR02169 328 EAEIDKLLAEIEEL-------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 789 KEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDatskdqlISE 868
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE-------LYD 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 869 LKATRKRLDSELKELRQELMQVHGEKRTAEaelSRLHREVAQVRQHMADLEG-HLQSAQ--KERDEMETHLQSLQFDKEQ 945
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASE---ERVRGGRAVEEVLKASIQGvHGTVAQlgSVGERYATAIEVAAGNRLN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 946 MVaVTEANEALKKQIEELQQE-ARKAITEQKQKMRRLGSDLTSAQKE--------MKTKHKAYENAV------GILSRRL 1010
Cdd:TIGR02169 551 NV-VVEDDAVAKEAIELLKRRkAGRATFLPLNKMRDERRDLSILSEDgvigfavdLVEFDPKYEPAFkyvfgdTLVVEDI 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1011 QEALAAKEAAD--AELGQLRAQGGS----SDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVL 1084
Cdd:TIGR02169 630 EAARRLMGKYRmvTLEGELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1085 ELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVlqrke 1164
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL----- 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1165 eEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAakVEAGHNRRHFKAASLElsEVKKELQAKEHLVQ----KLQAEADDL 1240
Cdd:TIGR02169 785 -EARLSHSRIPEIQAELSKLEEEVSRIEARLRE--IEQKLNRLTLEKEYLE--KEIQELQEQRIDLKeqikSIEKEIENL 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1241 QIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQgrkeleg 1320
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE------- 932
|
730 740
....*....|....*....|
gi 30089940 1321 LQQLLQNVKSELEMAQEDLS 1340
Cdd:TIGR02169 933 LSEIEDPKGEDEEIPEEELS 952
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
671-1343 |
2.87e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.29 E-value: 2.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 671 QRRLEEfegERERLQRMADSAASLEQQLE----QVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTH 746
Cdd:TIGR02168 178 ERKLER---TRENLDRLEDILNELERQLKslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 747 YDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEH 826
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 827 LQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHR 906
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 907 EVAQVRQHMADLEGHLQSAQKERDEMEthLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLT 986
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 987 SAQKEMKTKHKAYENAVGILSRRLQEALAAkeaadaelgQLRAQGGSSDS------SLALHERIQAL-----EAELQAVS 1055
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSGLSGIL---------GVLSELISVDEgyeaaiEAALGGRLQAVvvenlNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1056 HsktLLEKELQEV--IALTSQELEESREKVLELedeLQESRGFRKKIKRLEESNKKL-------------------ALEL 1114
Cdd:TIGR02168 564 F---LKQNELGRVtfLPLDSIKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1115 EHE----------KGKLTGLG--QSNAALREHNSILETA-----LAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQAL 1177
Cdd:TIGR02168 638 AKKlrpgyrivtlDGDLVRPGgvITGGSAKTNSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1178 QASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAE 1257
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1258 LAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQG---RKELEGLQQLLQNVKSELEM 1334
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESELEA 877
|
....*....
gi 30089940 1335 AQEDLSMTQ 1343
Cdd:TIGR02168 878 LLNERASLE 886
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
417-982 |
3.85e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.78 E-value: 3.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 417 LEGQLEALSLEASQALK------EKAELQAQLAALSTKLQaqvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNM 490
Cdd:COG1196 198 LERQLEPLERQAEKAERyrelkeELKELEAELLLLKLREL---------EAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 491 LEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISS 570
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 571 LQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHL---KLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEA 647
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlraAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 648 DMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLT 727
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 728 LTQEALQSREQSLDALQTH-------------YDELQARLGELQGEAASREDTICLLQNEK-----------IILEAALQ 783
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAvligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 784 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 863
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 864 QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEghlQSAQKERDEMETHLQSLQFDK 943
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLEELLEEE 745
|
570 580 590
....*....|....*....|....*....|....*....
gi 30089940 944 EQMVAVTEANEALKKQIEELQQEARKAiteqKQKMRRLG 982
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERL----EREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
671-1263 |
1.20e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.24 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 671 QRRLEEfegERERLQRMADSAASLEQQLEQVKLtllQRDQQLEALQQehldlmkqltltQEALQSREQSLDALqtHYDEL 750
Cdd:COG1196 178 ERKLEA---TEENLERLEDILGELERQLEPLER---QAEKAERYREL------------KEELKELEAELLLL--KLREL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 751 QARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQE 830
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 831 TAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQ 910
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 911 VRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK 990
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELE---EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 991 EMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQG--GSSDSSLALHERIQ-------ALEAELQAVS-HSKTL 1060
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaGLRGLAGAVAVLIGveaayeaALEAALAAALqNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1061 LEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILET 1140
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1141 A---LAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQAL---QASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASL 1214
Cdd:COG1196 635 AlrrAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALleaEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 30089940 1215 ELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARA 1263
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-1189 |
1.15e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.28 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 401 AETQEEMLQV---LKEkmrLEGQLEALSLEASQALKEKaELQAQLAALSTKLQAQVecSHSSQQRQDSLSSEVDTLKQSC 477
Cdd:TIGR02168 182 ERTRENLDRLediLNE---LERQLKSLERQAEKAERYK-ELKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 478 WDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTL 557
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 558 TSKLKASQAEISSLQSVRQWYQQQL----ALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLEN---VSLSQQLTETQHR 630
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELeeleAELEELESRLEELEEQLETLRSKVAQLELQIASLNneiERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 631 SMKEKGRIAAQLQGI-EADMLDQEAAFMQIQEAKTMVE---EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLL 706
Cdd:TIGR02168 416 RERLQQEIEELLKKLeEAELKELQAELEELEEELEELQeelERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 707 QRDQQLEALQQEHLDLMKQ-------LTLTQEALQSREQ-----------SLDALQTHYDELQARLGELQGEAASREDTI 768
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNqsglsgiLGVLSELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 769 CLLqneKIILEAALQAAKSGKEELDRGARRLEEGTEETSET------------------------LEKLREELAI----- 819
Cdd:TIGR02168 576 LPL---DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvvddldnalelAKKLRPGYRIvtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 820 ---------------KSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR 884
Cdd:TIGR02168 653 dlvrpggvitggsakTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 885 QELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQ 964
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---AQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 965 QEarkaITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRaqggssdsslALHERI 1044
Cdd:TIGR02168 810 AE----LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE----------ELESEL 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1045 QALEAELQAVSHSKTLLEKELQEVialtSQELEESREKVLELEDELQESrgfRKKIKRLEESNKKLALELEHEKGKLTGL 1124
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEEL----SEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRIDNLQERLSEE 948
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1125 GQSNA-ALREHNSILETALAKREADLVQLNLQV--------------QAVLQRKEEEDRQMKHLVQALqASLEKEKEKVN 1189
Cdd:TIGR02168 949 YSLTLeEAEALENKIEDDEEEARRRLKRLENKIkelgpvnlaaieeyEELKERYDFLTAQKEDLTEAK-ETLEEAIEEID 1027
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
813-1448 |
3.34e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.15 E-value: 3.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 813 LREELAiksGQVEHLQQEtAALKKQMQKIKEQFLQQKVMVEAYRRDatskdqlisELKATRKRLDSELKELRQELMQVHG 892
Cdd:COG1196 194 ILGELE---RQLEPLERQ-AEKAERYRELKEELKELEAELLLLKLR---------ELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 893 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEthlQSLQFDKEQMVAVTEANEALKKQIEELQQEarkaIT 972
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE---QDIARLEERRRELEERLEELEEELAELEEE----LE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 973 EQKQKMRRLGSDLTSAQKEMKTKHKAYENAvgiLSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQ 1052
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1053 AvshSKTLLEKELQEVIALTSQELEESREKVLELEDELQEsrgfRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALR 1132
Cdd:COG1196 411 A---LLERLERLEEELEELEEALAELEEEEEEEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1133 EHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVnslkEQVAAAKVEAGHNRRHFKAA 1212
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA----LEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1213 SLELSEVKKELQAK------EHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEM 1286
Cdd:COG1196 560 AAAIEYLKAAKAGRatflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1287 ENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQ 1366
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1367 NQQLKLDLRRGAAKTRKEPkgeasssnpatpikipdcpvpASLLEELLRPPPAVSKEPLKNLNscLQQLKQEMDSLQRQM 1446
Cdd:COG1196 720 ELEEEALEEQLEAEREELL---------------------EELLEEEELLEEEALEELPEPPD--LEELERELERLEREI 776
|
..
gi 30089940 1447 EE 1448
Cdd:COG1196 777 EA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
365-970 |
1.04e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 1.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 365 LQAAAAEHQDQGQEVNGEVRSRRDSIcssVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAA 444
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 445 LSTKLQAQvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQR 524
Cdd:COG1196 328 LEEELEEL-------EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 525 SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQM 604
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 605 TQAGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAfmqiqeaktmVEEDLQRRLEEFEGEReRL 684
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG----------VEAAYEAALEAALAAA-LQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 685 QRMADSAASLEQQLEQVKLTLLQRDQQLEalqqehLDLMKQLTLTQEALQSREQSLDALQTHYD--ELQARLGELQGEAA 762
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLP------LDKIRARAALAAALARGAIGAAVDLVASDlrEADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 763 SREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIK 842
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 843 EQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHL 922
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN 783
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 30089940 923 QSAQKERDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKA 970
Cdd:COG1196 784 LLAIEEYEELEERYDFL---SEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
395-981 |
3.61e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 3.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 395 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQ-------DSLS 467
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLeelkeelESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 468 SEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQ-----QMTA 542
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 543 LQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLK-------- 614
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallknqsg 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 615 ---------------------LENV-----------SLSQQLTETQHRSMKEKGRIA---------AQLQGIEADMLDQE 653
Cdd:TIGR02168 518 lsgilgvlselisvdegyeaaIEAAlggrlqavvveNLNAAKKAIAFLKQNELGRVTflpldsikgTEIQGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 654 AAFMQIQEAKTMVEEDLQRRLEEFEG------------ERERLQRMADSAASLEQQL-----------EQVKLTLLQRDQ 710
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGgvlvvddldnalELAKKLRPGYRIVTLDGDLvrpggvitggsAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 711 QLEalqqehlDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKE 790
Cdd:TIGR02168 678 EIE-------ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 791 ELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmvEAYRRDATSKDQLISELK 870
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-------DELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 871 ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVT 950
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
650 660 670
....*....|....*....|....*....|.
gi 30089940 951 EANEALKKQIEELQQEARKAITEQKQKMRRL 981
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-982 |
4.14e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 4.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 345 VNGQEIPADTLGQFPSIKDVLQAAAAEHQDQGQEVNGEVRSRRDSICSSVS----LESSAAETQEEMLQVLKEKMRLEGQ 420
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleeLESRLEELEEQLETLRSKVAQLELQ 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 421 LEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQrqDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLAS 500
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 501 SNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALqsqlqqvqlerttltSKLKASQAEISSLQSVRQWYQQ 580
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ---------------SGLSGILGVLSELISVDEGYEA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 581 QLALAqearvrLQGEMAHIQVGQMTQAGL-LEHLK---------LENVSLSQQLTETQHRSMKEKGR-----------IA 639
Cdd:TIGR02168 538 AIEAA------LGGRLQAVVVENLNAAKKaIAFLKqnelgrvtfLPLDSIKGTEIQGNDREILKNIEgflgvakdlvkFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 640 AQLQGIEADMLDQEAAFMQIQEAKTM-VEEDLQRRLEEFEGER-------------------ERLQRMADsaasLEQQLE 699
Cdd:TIGR02168 612 PKLRKALSYLLGGVLVVDDLDNALELaKKLRPGYRIVTLDGDLvrpggvitggsaktnssilERRREIEE----LEEKIE 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 700 QVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILE 779
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 780 AALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVE--AYRR 857
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEdlEEQI 847
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 858 DATSKDQL-----ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEM 932
Cdd:TIGR02168 848 EELSEDIEslaaeIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 933 ETHLQSLQFD--------KEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLG 982
Cdd:TIGR02168 928 ELRLEGLEVRidnlqerlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
402-1243 |
9.93e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 9.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 402 ETQEEMLQVLKEKMRLEGQLEALSLEAsqALKEKAELQAQLAALS---TKLQAQVecshssQQRQDSLSSEVDTLKQSCW 478
Cdd:TIGR02169 208 EKAERYQALLKEKREYEGYELLKEKEA--LERQKEAIERQLASLEeelEKLTEEI------SELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 479 DLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMakvEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLT 558
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL---EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 559 SKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiqvgqmtqaglLEHLKLENVSLSQqlteTQHRSMKEKGRI 638
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK--------------LEKLKREINELKR----ELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 639 AAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAaslEQQLEQVKLTLLQRDQQLEALQQE 718
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAADLSKY---EQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 719 hldlMKQLTLTQEALQSREQSLDALQTHYDE-------LQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEE 791
Cdd:TIGR02169 492 ----LAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 792 LDRGARRLEEGTEETSETLEKLREELAiKSGQVEHLqQETAALKKQMQKIKEQFLQQKVMV---EAYRR----------- 857
Cdd:TIGR02169 568 KRRKAGRATFLPLNKMRDERRDLSILS-EDGVIGFA-VDLVEFDPKYEPAFKYVFGDTLVVediEAARRlmgkyrmvtle 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 858 -DATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHL 936
Cdd:TIGR02169 646 gELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 937 QSLQFDKEQmvaVTEANEALKKQIEELQQEarkaITEQKQKMRRLGSDLtsaqKEMKTKHKAYENAVGILSRRLqealaA 1016
Cdd:TIGR02169 726 EQLEQEEEK---LKERLEELEEDLSSLEQE----IENVKSELKELEARI----EELEEDLHKLEEALNDLEARL-----S 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1017 KEAADAELGQLRAQggsSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIaltsQELEESREKVLELEDELQESRGF 1096
Cdd:TIGR02169 790 HSRIPEIQAELSKL---EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGK 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1097 RKKIKRLEESNKKLALELEHEKGKLTG----LGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKH 1172
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30089940 1173 LVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRrhfkaASLELSEVKKELQAKEHLVQKLQAEADDLQIR 1243
Cdd:TIGR02169 943 DEEIPEEELSLEDVQAELQRVEEEIRALEPVNML-----AIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
649-1262 |
1.47e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 72.64 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 649 MLDQEAAFMQIQEAKTMVEE--DLQRRLEEFEGERERLQRMADSAASLEQQLEQV-KLTLLQRDQQLEALQQEHLDLMKQ 725
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDDleRAHEALEDAREQIELLEPIRELAERYAAARERLaELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 726 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEaasredticllqnekiILEAALQAAKSGKEELDRgarrleegtee 805
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQ----------------IRGNGGDRLEQLEREIER----------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 806 tsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKvmveayrrdatskdqliSELKATRKRLDSELKELRQ 885
Cdd:COG4913 350 -------LERELEERERRRARLEALLAALGLPLPASAEEFAALR-----------------AEAAALLEALEEELEALEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 886 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAqkeRDEMETHLQ----SLQFDKEqMVAVTEANEALKKQIE 961
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALGldeaELPFVGE-LIEVRPEEERWRGAIE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 962 --------------ELQQEARKAITEQKQKMR----RLGSDLTSAQK----------EMKTK-HKAYENAVGILSRRL-- 1010
Cdd:COG4913 482 rvlggfaltllvppEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERprldpdslagKLDFKpHPFRAWLEAELGRRFdy 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1011 --------------------QEALAAKEAADAELGQLRAQ---GGSSDSSLA-LHERIQALEAELQAVSHSKTLLEKELQ 1066
Cdd:COG4913 562 vcvdspeelrrhpraitragQVKGNGTRHEKDDRRRIRSRyvlGFDNRAKLAaLEAELAELEEELAEAEERLEALEAELD 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1067 EVIAL-----TSQELEESREKVLELEDELQEsrgFRKKIKRLEESN---KKLALELEHEKGKLTGLGQSNAALREHNSIL 1138
Cdd:COG4913 642 ALQERrealqRLAEYSWDEIDVASAEREIAE---LEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1139 ETALAKREADLVQLNLQVQAVLQRKEEE--------------DRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAgh 1204
Cdd:COG4913 719 EKELEQAEEELDELQDRLEAAEDLARLElralleerfaaalgDAVERELRENLEERIDALRARLNRAEEELERAMRAF-- 796
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30089940 1205 nRRHFKAASLELSEvkkELQAKEHLVQKLQA-EADDL-----QIREGKHS---QEIAQFQAELAEAR 1262
Cdd:COG4913 797 -NREWPAETADLDA---DLESLPEYLALLDRlEEDGLpeyeeRFKELLNEnsiEFVADLLSKLRRAI 859
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
842-1359 |
2.84e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.63 E-value: 2.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 842 KEQFLQQKVMVEayRRDATSKDQLISELKATRKrLDSELKELRQELMQVHGEKRTAEA---ELSRLHREVAQVRQHMADL 918
Cdd:PRK03918 181 LEKFIKRTENIE--ELIKEKEKELEEVLREINE-ISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 919 EGHLQSAQKERDEMETHLQSLqfdkEQMVAVTEANEALKKQIEELQQEARKaITEQKQKMRRLGSDLTSAQKEMKTKHKA 998
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEEL----EEKVKELKELKEKAEEYIKLSEFYEE-YLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 999 YENavgiLSRRLQEALAAKEAADAELGQLRaqggssdSSLALHERIQALEAELQavSHSKTLLEKELQEVIAltsqELEE 1078
Cdd:PRK03918 333 LEE----KEERLEELKKKLKELEKRLEELE-------ERHELYEEAKAKKEELE--RLKKRLTGLTPEKLEK----ELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1079 SREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGqsnAALREHNSilETALAKREADLVQlnlqVQA 1158
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG---RELTEEHR--KELLEEYTAELKR----IEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1159 VLQRKEEEDRQMKHLVQALQASLEKEKE--KVNSLKEQVAAAKVE-AGHNRRHFKAASLELSEVKKELQAKEHLVQKLQA 1235
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1236 EADDLQIREGKhSQEIAQFQAELAEARAQLqllqkqldeqlskqpvgNQEMENLKWE-VDQKEREIQSLKQQLD--LTEQ 1312
Cdd:PRK03918 547 ELEKLEELKKK-LAELEKKLDELEEELAEL-----------------LKELEELGFEsVEELEERLKELEPFYNeyLELK 608
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 30089940 1313 QGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNN 1359
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
667-1202 |
5.45e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 5.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 667 EEDLQRRLEEFEGERERLQRMADSAASLEQQL-------EQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQS 739
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELreeleklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 740 LDALQTHYDELQ---ARLGELQGEA-------ASREDTICLLQNEKIILEAALQAAKSGKEELDRgARRLEEGTEETSET 809
Cdd:PRK03918 268 IEELKKEIEELEekvKELKELKEKAeeyiklsEFYEEYLDELREIEKRLSRLEEEINGIEERIKE-LEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 810 LEKLREELAIKSGQVEhLQQETAALKKQMQKIKEQFLQQKV-----MVEAYRRDATSKDQLISELKATRKRLDSELKELR 884
Cdd:PRK03918 347 LKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPeklekELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 885 QELMQVHGEKRTA-----------EAEL-SRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS---LQFDKEQMVAV 949
Cdd:PRK03918 426 KAIEELKKAKGKCpvcgrelteehRKELlEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKeseLIKLKELAEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 950 TEANEALKK-QIEELQQEARKAiTEQKQKMRRLGSDLTSAQKEMKtKHKAYENAVGILSRRLQealAAKEAADAELGQLR 1028
Cdd:PRK03918 506 KELEEKLKKyNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLD---ELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1029 AQGGSSDSSlaLHERIQALEA---ELQAVSHSKTLLEKELQEvIALTSQELEESREKVLELEDELQESRgfrkkiKRLEE 1105
Cdd:PRK03918 581 ELGFESVEE--LEERLKELEPfynEYLELKDAEKELEREEKE-LKKLEEELDKAFEELAETEKRLEELR------KELEE 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1106 SNKKLALElEHEKgkltglgqsnaaLREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQ--ASLEK 1183
Cdd:PRK03918 652 LEKKYSEE-EYEE------------LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKelEKLEK 718
|
570
....*....|....*....
gi 30089940 1184 EKEKVNSLKEQVAAAKVEA 1202
Cdd:PRK03918 719 ALERVEELREKVKKYKALL 737
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
630-1333 |
6.76e-12 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 70.77 E-value: 6.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 630 RSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVE-EDLQRRLEEFEGErERLQRMADSAASLEQQLEQVKLTLLQR 708
Cdd:TIGR00618 160 AKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAElLTLRSQLLTLCTP-CMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 709 DQQLEALQQEHLdlmkqltlTQEALQSREQSLDALQTHYDELQ---ARLGELQGEAASREDTICLLQNEKIILEAALQAA 785
Cdd:TIGR00618 239 QQSHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 786 KSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQK-IKEQFLQQKVMVEAYRRDATSKDQ 864
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsIREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 865 LISELKATRKRLDSELKE-------------LRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDE 931
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREqatidtrtsafrdLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 932 METHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLG--SDLTSAQKEMKTKHKAYENAVGILSRR 1009
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1010 LQEALAAKEAADAELGQLRaqggssDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDE 1089
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQ------QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1090 LQESRgfrkKIKRLEESNKKLALELEHEKGKLTGLGQSNaalrehnsILETALAKREADLvQLNLQVQAVLQRKEEEDRQ 1169
Cdd:TIGR00618 625 QDLQD----VRLHLQQCSQELALKLTALHALQLTLTQER--------VREHALSIRVLPK-ELLASRQLALQKMQSEKEQ 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1170 MKHLVQALQASLEKEKEKVNSLKEqvaaakveaghNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHsQ 1249
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRELETHIEE-----------YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA-R 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1250 EIAQFQAELAEARAQLQllqkqldeqlskqpvgNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKEL----------- 1318
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQT----------------GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdedilnlqc 823
|
730
....*....|....*
gi 30089940 1319 EGLQQLLQNVKSELE 1333
Cdd:TIGR00618 824 ETLVQEEEQFLSRLE 838
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
833-1362 |
1.08e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 833 ALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVR 912
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 913 QHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEM 992
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 993 KTkhkayenavgiLSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHER--IQALEAELQAVSHSKTLLEKELQEVIA 1070
Cdd:TIGR02168 396 AS-----------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELkeLQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1071 LTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKL---ALELEHEKGKLTGLGQSNAALREHNSILETALAkrea 1147
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegVKALLKNQSGLSGILGVLSELISVDEGYEAAIE---- 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1148 dlVQLNLQVQAVLQRKEEEDRQmkhlvqALQASLEKEKEKVNSLKE------QVAAAKVEAGHNRRHFKAASLELSEVKK 1221
Cdd:TIGR02168 541 --AALGGRLQAVVVENLNAAKK------AIAFLKQNELGRVTFLPLdsikgtEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1222 ELQ-------AKEHLVQKLQaEADDLQIREGKH-------------------------------SQEIAQFQAELAEARA 1263
Cdd:TIGR02168 613 KLRkalsyllGGVLVVDDLD-NALELAKKLRPGyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1264 QLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVK----------SELE 1333
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTeleaeieeleERLE 771
|
570 580
....*....|....*....|....*....
gi 30089940 1334 MAQEDLSMTQKDKFMLQAKVSELKNNMKT 1362
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
812-1339 |
1.56e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 812 KLREELAIKSGQVEHLQQEtaalKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVH 891
Cdd:PRK03918 211 EISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 892 GEKRTAEaELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEAR--- 968
Cdd:PRK03918 287 ELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElye 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 969 --KAITEQKQKMRRLGSDLTSAQ-----KEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSS---DSSL 1038
Cdd:PRK03918 366 eaKAKKEELERLKKRLTGLTPEKlekelEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcGREL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1039 ALHERIQALEAELQAVSHsktlLEKELQEVIALTSQELEESR--EKVLELEDELQESRGFRKKIKRLEESNKKLALE-LE 1115
Cdd:PRK03918 446 TEEHRKELLEEYTAELKR----IEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEeLE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1116 HEKGKLTGLGQSNAALREHNSILETALaKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKvnSLKEqv 1195
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE--RLKE-- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1196 aaakVEAGHNRrhfkaaSLELSEVKKELQAKEHLVQKLQAEADdlqiregKHSQEIAQFQAELAEARAQLQLLqkqldeq 1275
Cdd:PRK03918 597 ----LEPFYNE------YLELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKELEEL------- 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30089940 1276 lsKQPVGNQEMENLKWEVDQKEREIQSLkqqldlteqqgRKELEGLQQLLQNVKSELEMAQEDL 1339
Cdd:PRK03918 653 --EKKYSEEEYEELREEYLELSRELAGL-----------RAELEELEKRREEIKKTLEKLKEEL 703
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
553-1244 |
6.73e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 6.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 553 ERTTLTSKLKASQAEISSLQSVRQWYQQQlalaqeARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 632
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQ------ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 633 KEKGRIAAQLQgiEADMLDQEAAFMQIQEAKTMVeeDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQL 712
Cdd:pfam15921 353 LANSELTEART--ERDQFSQESGNLDDQLQKLLA--DLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEV 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 713 EALQQehldLMKqlTLTQEALQSREQSLDALQTHYDELQaRLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEL 792
Cdd:pfam15921 429 QRLEA----LLK--AMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 793 DRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKK---QMQKIKEQFLQQKVMVEAYRRDATSKDQLISE- 868
Cdd:pfam15921 502 TASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQMAEKDKVIEILRQQIENMTQLVGQh 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 869 ------LKATRKRLDSELKELRQELMQVHGEK-------RTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMeth 935
Cdd:pfam15921 582 grtagaMQVEKAQLEKEINDRRLELQEFKILKdkkdakiRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQL--- 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 936 LQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALA 1015
Cdd:pfam15921 659 LNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1016 AKEAADAELGQLR----AQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQeviALTSQElEESREKVLELEDELQ 1091
Cdd:pfam15921 739 KRGQIDALQSKIQfleeAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE---VLRSQE-RRLKEKVANMEVALD 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1092 ESR----GFRKKIKRLEESNKKLALELEHEKGKLTGLG-QSNAALREHnsILETALAKREADLVQLNLQVQAVLQR---- 1162
Cdd:pfam15921 815 KASlqfaECQDIIQRQEQESVRLKLQHTLDVKELQGPGyTSNSSMKPR--LLQPASFTRTHSNVPSSQSTASFLSHhsrk 892
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1163 ----KEEEDRQMKHLVQALQASLEKEkEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEAD 1238
Cdd:pfam15921 893 tnalKEDPTRDLKQLLQELRSVINEE-PTVQLSKAEDKGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSS 971
|
....*.
gi 30089940 1239 DLQIRE 1244
Cdd:pfam15921 972 ETCSRE 977
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1042-1340 |
1.29e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1042 ERIQALEAELQ-----AVSHSKTLLEKELQEV---IALTSQELEESREKVLELEDELQESRGFRKKI-KRLEESNKKLAL 1112
Cdd:TIGR02169 211 ERYQALLKEKReyegyELLKEKEALERQKEAIerqLASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1113 ELEHEKGKLTG-LGQSNAALREHNSILETAlakrEADLVQLNLQVQAVLQRKEEEDRQmkhlVQALQASLEKEKEKVNSL 1191
Cdd:TIGR02169 291 RVKEKIGELEAeIASLERSIAEKERELEDA----EERLAKLEAEIDKLLAEIEELERE----IEEERKRRDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1192 KEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAqlqllqkq 1271
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA-------- 434
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30089940 1272 ldeqlsKQPVGNQEMENLKWEVDQKEREIQSLKQQLDlteqQGRKELEGLQQLLQNVKSELEMAQEDLS 1340
Cdd:TIGR02169 435 ------KINELEEEKEDKALEIKKQEWKLEQLAADLS----KYEQELYDLKEEYDRVEKELSKLQRELA 493
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
408-1110 |
1.85e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 65.76 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 408 LQVLKEKMRLEGQLEALSLEAS----------QALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSC 477
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQlltlctpcmpDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 478 WDLERAMTDLQNMLEAknASLASSNNDLQVAEEQYQRLMAKVEdmqrsmlskdntvhDLRQQMTALQSQLQQVQLERTTL 557
Cdd:TIGR00618 263 KQLRARIEELRAQEAV--LEETQERINRARKAAPLAAHIKAVT--------------QIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 558 TSKLKASQAEISSLQSVRQWYQQqlALAQEARVRLQGEmahiqvgqmTQAGLLEHlklenvsLSQQLTETQH-RSMKEKG 636
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQT--LHSQEIHIRDAHE---------VATSIREI-------SCQQHTLTQHiHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 637 RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQ 716
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR---YAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 717 QEhLDLMKQLTLTQEALQSREQSLDALQTHydelqaRLGELQGEAASREDTiCLLQNEKIILEAALQAAKSGKEELDRGA 796
Cdd:TIGR00618 466 QS-LKEREQQLQTKEQIHLQETRKKAVVLA------RLLELQEEPCPLCGS-CIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 797 RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYR----RDATSKDQLISELKAT 872
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdlteKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 873 RKRLDSEL--KELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADL------EGHLQSAQKERDEMETHLQSLQFDKE 944
Cdd:TIGR00618 618 LRKLQPEQdlQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirvlpKELLASRQLALQKMQSEKEQLTYWKE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 945 Q-------MVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEN-------AVGILSRRL 1010
Cdd:TIGR00618 698 MlaqcqtlLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEahfnnneEVTAALQTG 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1011 QEALAAKEAADAELGQLRAQGGSSDSSLALHEriQALEAELQAVSHSKTLLEKELQEV---IALTSQELEESREKVLELE 1087
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIG--QEIPSDEDILNLQCETLVQEEEQFlsrLEEKSATLGEITHQLLKYE 855
|
730 740
....*....|....*....|...
gi 30089940 1088 DELQESRGFRKKIKRLEESNKKL 1110
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
618-973 |
3.55e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 618 VSLSQQLTETQHR--SMK-EKGRIAAQLQGIEADMldqEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRMAdsaASL 694
Cdd:TIGR02169 670 RSEPAELQRLRERleGLKrELSSLQSELRRIENRL---DELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERL---EEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSL-----DALQTHYDELQARLGELQGEAASREDTIC 769
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsriPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 770 LLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQK 849
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 850 VMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHgEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKER 929
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY 981
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 30089940 930 DEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITE 973
Cdd:TIGR02169 982 EEVLKRLDEL---KEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
464-1005 |
3.80e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.94 E-value: 3.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 464 DSLSSEVDTLKqscwDLERAMTDLQNMLEAknaslassnndLQVAEEQYQRLMAKVEDMQ-----RSMLSKDN---TVHD 535
Cdd:COG4913 228 DALVEHFDDLE----RAHEALEDAREQIEL-----------LEPIRELAERYAAARERLAeleylRAALRLWFaqrRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 536 LRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQsvRQWYQ---QQLALAQEARVRLQGEMAHIQVGQMTQAGLLEH 612
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELE--AQIRGnggDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 613 LKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERL-QRMADSA 691
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL----RELEAEIASLERRKSNIpARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 692 ASLEQQLE-------------QVK------------------LTLLQRDQQ----LEALQQEHLdlmkQLTLTQEALQSR 736
Cdd:COG4913 447 DALAEALGldeaelpfvgeliEVRpeeerwrgaiervlggfaLTLLVPPEHyaaaLRWVNRLHL----RGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 737 EQSLDALQTHYDELQARL--------GELQGEAASREDTIC------LLQNEKIILEAALQAAKSGKEELD--RGARRLE 800
Cdd:COG4913 523 LPDPERPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDYVCvdspeeLRRHPRAITRAGQVKGNGTRHEKDdrRRIRSRY 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 801 EGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQF--LQQKVMVEAYRRDATSKDQLISELKATRKRLD- 877
Cdd:COG4913 603 VLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERReaLQRLAEYSWDEIDVASAEREIAELEAELERLDa 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 878 --SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS-LQFDKEQMVavteANE 954
Cdd:COG4913 683 ssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLeLRALLEERF----AAA 758
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 30089940 955 ALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 1005
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDA 809
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
669-1197 |
7.37e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.91 E-value: 7.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 669 DLQRRLEEFEGERERLQRMADSAASLEQQLEQvkltllqRDQQLEALQQEHLDLmkqltltQEALQSREQSLDALQTHYD 748
Cdd:PRK02224 217 ELDEEIERYEEQREQARETRDEADEVLEEHEE-------RREELETLEAEIEDL-------RETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 749 ELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQ 828
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 829 QETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREV 908
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 909 AQVRQHMAdlEGHLQSAQKERDEMEtHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAiteqkqkmrrlgSDLTSA 988
Cdd:PRK02224 443 EEAEALLE--AGKCPECGQPVEGSP-HVETIEEDRERVEELEAELEDLEEEVEEVEERLERA------------EDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 989 QKEMKTKHKAYENavgiLSRRLQEALAAKEAADAELGQLRAQGGSSDSSlALHERIQALEAELQAvshsktllEKELQEV 1068
Cdd:PRK02224 508 EDRIERLEERRED----LEELIAERRETIEEKRERAEELRERAAELEAE-AEEKREAAAEAEEEA--------EEAREEV 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1069 IALTS--QELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALRE--HNSILETALAK 1144
Cdd:PRK02224 575 AELNSklAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEARED 654
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 30089940 1145 REaDLVQLNLQVQAVLQRKEEEdrqmKHLVQALQASLEKEKEKVNSLKEQVAA 1197
Cdd:PRK02224 655 KE-RAEEYLEQVEEKLDELREE----RDDLQAEIGAVENELEELEELRERREA 702
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
688-928 |
9.38e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.47 E-value: 9.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 688 ADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASredt 767
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 768 icllqnekiiLEAALQAAksgKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQ 847
Cdd:COG4942 95 ----------LRAELEAQ---KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 848 QKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQK 927
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 30089940 928 E 928
Cdd:COG4942 242 R 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-743 |
1.24e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 393 SVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDT 472
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 473 LKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSkdntvhdLRQQMTALQSQLQQVQL 552
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-------LREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 553 ERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQ--------- 623
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAlallrsele 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 624 -LTETQHRSMKEKGRIAAQLQG----IEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERL----QRMADSAASL 694
Cdd:TIGR02168 898 eLSEELRELESKRSELRRELEElrekLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeddeEEARRRLKRL 977
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 30089940 695 EQQLEQ---VKLTLLqrdQQLEALQQEHLDLMKQLTLTQEALQSREQSLDAL 743
Cdd:TIGR02168 978 ENKIKElgpVNLAAI---EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
818-1263 |
1.32e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.86 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 818 AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA 897
Cdd:COG4717 42 FIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 898 EAELS--RLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkeqmvavteanEALKKQIEELQQEARKAITEQK 975
Cdd:COG4717 122 EKLLQllPLYQELEALEAELAELPERLEELEERLEELRELEEEL--------------EELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 976 QKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALA--AKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQA 1053
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEelEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1054 VSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI----KRLEESNKKLALELEHEKGKLTGLGQSNA 1129
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEeleeEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1130 ALREHNSILETalAKREADLVQLNLQVQAVLQRKEEEDRQMkhLVQALQAS--LEKEKEKVNSLKEQVAAAKVEAGHNRR 1207
Cdd:COG4717 348 ELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEE--LRAALEQAeeYQELKEELEELEEQLEELLGELEELLE 423
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1208 HFKAASL--ELSEVKKELQAKEHLVQKLQAEADDL--QIREGKHSQEIAQFQAELAEARA 1263
Cdd:COG4717 424 ALDEEELeeELEELEEELEELEEELEELREELAELeaELEQLEEDGELAELLQELEELKA 483
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
675-1357 |
1.88e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 675 EEFEGERERLQRMADSAaslEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLtQEALQSREQSLDALQthYDELQARL 754
Cdd:TIGR02169 166 AEFDRKKEKALEELEEV---EENIERLDLIIDEKRQQLERLRREREKAERYQAL-LKEKREYEGYELLKE--KEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 755 GELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETsetlekLREELAIKSGQVEHLQQETAAL 834
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 835 KKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQH 914
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 915 MADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEmkt 994
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE--- 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 995 kHKAYENAVGILSRRLQealaakeaadaelgqlraqggssdsslALHERIQALEAELQAVSHS-------KTLLEKELQE 1067
Cdd:TIGR02169 471 -LYDLKEEYDRVEKELS---------------------------KLQRELAEAEAQARASEERvrggravEEVLKASIQG 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1068 VIALTSQELEESREKVLELEDELQESRGFrkkIKRLEESNKKLALEL--EHEKGKLT--GLGQSNAALREHNSILETALA 1143
Cdd:TIGR02169 523 VHGTVAQLGSVGERYATAIEVAAGNRLNN---VVVEDDAVAKEAIELlkRRKAGRATflPLNKMRDERRDLSILSEDGVI 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1144 KREADLVQLNLQVQA----------VLQRKEEEDRQMkhlVQALQASLEKEkekvnsLKEQVAAakVEAGHNRRhfKAAS 1213
Cdd:TIGR02169 600 GFAVDLVEFDPKYEPafkyvfgdtlVVEDIEAARRLM---GKYRMVTLEGE------LFEKSGA--MTGGSRAP--RGGI 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1214 LELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARaqlqllqkqldeqlskqpvgnqemenlkwev 1293
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS------------------------------- 715
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30089940 1294 dQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELK 1357
Cdd:TIGR02169 716 -RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE 778
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
695-1244 |
1.93e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.50 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSR-------EQSLDALQTHYDELQARLGELQGEAASREDT 767
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAEtelcaeaEEMRARLAARKQELEEILHELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 768 ICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQ 847
Cdd:pfam01576 91 SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 848 QKVMVEAYRRDATSKDQLISELKATRKRLDselkELRQELMQVhgeKRTAEAELSRLHREVAQVRQHMADLEGHLqsaQK 927
Cdd:pfam01576 171 EEEKAKSLSKLKNKHEAMISDLEERLKKEE----KGRQELEKA---KRKLEGESTDLQEQIAELQAQIAELRAQL---AK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 928 ERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQ--EARKAITEQKQKMRR-LGSDL-------------TSAQKE 991
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEdlESERAARNKAEKQRRdLGEELealkteledtldtTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 992 MKTKHkayENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSdsslaLHERIQALEAELQAVSHSKTLLEKE---LQEV 1068
Cdd:pfam01576 321 LRSKR---EQEVTELKKALEEETRSHEAQLQEMRQKHTQALEE-----LTEQLEQAKRNKANLEKAKQALESEnaeLQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1069 IALTSQELEESREKVLELEDELQE-----SRGFRKKIKRLEESNkKLALELEHEKGKLtglgqsnaalrehnSILETALA 1143
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKKLEGQLQElqarlSESERQRAELAEKLS-KLQSELESVSSLL--------------NEAEGKNI 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1144 KREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQAsLEKEKekvNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKEL 1223
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQ-LEDER---NSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
570 580
....*....|....*....|....*...
gi 30089940 1224 Q-------AKEHLVQKLQAEADDLQIRE 1244
Cdd:pfam01576 534 EedagtleALEEGKKRLQRELEALTQQL 561
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
829-1343 |
2.43e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.44 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 829 QETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLH--- 905
Cdd:pfam15921 138 QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHfrs 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 906 -------------REVAQVRQHMADLEGHLQSAQKE-RDEMETHLQSLQFDKEQMV----------------AVTEANeA 955
Cdd:pfam15921 218 lgsaiskilreldTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLIseheveitgltekassARSQAN-S 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 956 LKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSD 1035
Cdd:pfam15921 297 IQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1036 SSLA-----LHERIQALEAELQ--------------AVSHSKTLLEKELQEVIALTS--------------------QEL 1076
Cdd:pfam15921 377 DQLQklladLHKREKELSLEKEqnkrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEAllkamksecqgqmerqmaaiQGK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1077 EESREKVLELEDELQESRGFRKKIKRlEESNKKLALELEHEKgkltgLGQSNAALREHNSILETALAKREADLVQLNLQV 1156
Cdd:pfam15921 457 NESLEKVSSLTAQLESTKEMLRKVVE-ELTAKKMTLESSERT-----VSDLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1157 QAVLQRKEEED--RQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKehlvqklQ 1234
Cdd:pfam15921 531 QELQHLKNEGDhlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-------R 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1235 AEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQG 1314
Cdd:pfam15921 604 LELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF 683
|
570 580
....*....|....*....|....*....
gi 30089940 1315 RKELEGLQQLLQNVKSELEMAQEDLSMTQ 1343
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
787-1115 |
3.04e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 3.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 787 SGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETA-ALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQL 865
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkAERYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 866 ---ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRL-HREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQ- 940
Cdd:TIGR02169 243 erqLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEe 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 941 ---FDKEQMVAVTEANEALKKQIEELQQEARK---AITEQKQKMRRLGSDLTSAQKEMKT---KHKAYENAVGILSRRLQ 1011
Cdd:TIGR02169 323 rlaKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1012 EALAAKEAADAELGQLRAQGGSsdsslaLHERIQALEAELQAVSHSKtlleKELQEVIALTSQELEESREKvleLEDELQ 1091
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELAD------LNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAAD---LSKYEQ 469
|
330 340
....*....|....*....|....
gi 30089940 1092 ESRGFRKKIKRLEESNKKLALELE 1115
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELA 493
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
660-1362 |
3.73e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.53 E-value: 3.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 660 QEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQS 739
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 740 LDALQTHYD-----ELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRgaRRLEEGTEETSETLEKLR 814
Cdd:pfam02463 304 KLERRKVDDeeklkESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEK--LQEKLEQLEEELLAKKKL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 815 EELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATR--KRLDSELKELRQELMQVHG 892
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIElkQGKLTEEKEELEKQELKLL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 893 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL-------------------------------QF 941
Cdd:pfam02463 462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGlkvllalikdgvggriisahgrlgdlgvaveNY 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 942 DKEQMVAVTEANEALKKQIEElQQEARKAITEQKQKMRRLGSDLTSAQKEMKtkhKAYENAVGILSRRLQEALAAKEAAD 1021
Cdd:pfam02463 542 KVAISTAVIVEVSATADEVEE-RQKLVRALTELPLGARKLRLLIPKLKLPLK---SIAVLEIDPILNLAQLDKATLEADE 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1022 AELGQLRAQGGSSDSSLA-LHERIQALEAELQAVShSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI 1100
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTkLKESAKAKESGLRKGV-SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1101 KRLEESNKKLALELEHEKGKLTGLGQSNAALRE--HNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQ 1178
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEaqDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1179 ASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKhsqEIAQFQAEL 1258
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE---EQKLEKLAE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1259 AEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQED 1338
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
730 740
....*....|....*....|....
gi 30089940 1339 LSMTQKDKFMLQAKVSELKNNMKT 1362
Cdd:pfam02463 934 EEEPEELLLEEADEKEKEENNKEE 957
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
812-1337 |
2.26e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 812 KLREELAIKSGQVEHLQQETAALKKQMQKIKEQflQQKVMVEayrrdatskdqlISELKATRKRLDSELKELRQELMQVH 891
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTE------------IKKKEKELEKLNNKYNDLKKQKEELE 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 892 GEKRTAEAELSRLHREVAQVRQHMADLEgHLQSAQKERDEMETHLQSlqfdkeQMVAVTEANEALKKQIEELQQEARK-- 969
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLE-LLLSNLKKKIQKNKSLES------QISELKKQNNQLKDNIEKKQQEINEkt 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 970 -AITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSrRLQEALAAKEAADAELGQLRAQGGSSDsslaLHERIQALE 1048
Cdd:TIGR04523 246 tEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK-ELEKQLNQLKSEISDLNNQKEQDWNKE----LKSELKNQE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1049 AELQAVSHSKTLLEK---ELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKG----KL 1121
Cdd:TIGR04523 321 KKLEEIQNQISQNNKiisQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINdlesKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1122 TGLGQSNAALREHNSILET---ALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAA 1198
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1199 KVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSK 1278
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE 560
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30089940 1279 QPVG--NQEMENLKWE---VDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQE 1337
Cdd:TIGR04523 561 KEIDekNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
683-1340 |
3.30e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.70 E-value: 3.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 683 RLQRMADSAASLEQQLEQVKLTLLQrdqqleaLQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEaa 762
Cdd:pfam12128 235 GIMKIRPEFTKLQQEFNTLESAELR-------LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDE-- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 763 sredticlLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEklrEELAIKSGQVEHLQQETAALKKQMQKIK 842
Cdd:pfam12128 306 --------LNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQ---EQLPSWQSELENLEERLKALTGKHQDVT 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 843 EQFLQQKVMVEayRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA-EAELSRLHREVAQVRQHMADLEGH 921
Cdd:pfam12128 375 AKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQlEAGKLEFNEEEYRLKSRLGELKLR 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 922 LQSAQKERDEMethLQSLQFDkEQMVAVTEANEALKKQIEELQQE---ARKAITEQKQKMRRLGSDLTSAQKEMKTKHKA 998
Cdd:pfam12128 453 LNQATATPELL---LQLENFD-ERIERAREEQEAANAEVERLQSElrqARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 999 YENAVGILsrrLQEALAAKEAADAELGQL--RAQGGSSD-------SSLALHERIQALEAELQAVSHSKTL-LEKELQEV 1068
Cdd:pfam12128 529 LFPQAGTL---LHFLRKEAPDWEQSIGKVisPELLHRTDldpevwdGSVGGELNLYGVKLDLKRIDVPEWAaSEEELRER 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1069 IALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQS-----NAALREHNSILETALA 1143
Cdd:pfam12128 606 LDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSekdkkNKALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1144 KREADLVQLNLQVQAVLQRKEEEDRQMK-HLVQALQASLEKEKEKVNSLKEQVAAAKVEAghnRRHFKAASlelSEVKKE 1222
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARtEKQAYWQVVEGALDAQLALLKAAIAARRSGA---KAELKALE---TWYKRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1223 LQAKehlvqklqaeaDDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPvgnQEMENLKWEVDQKEREIQS 1302
Cdd:pfam12128 760 LASL-----------GVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWL---QRRPRLATQLSNIERAISE 825
|
650 660 670
....*....|....*....|....*....|....*...
gi 30089940 1303 LKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLS 1340
Cdd:pfam12128 826 LQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLR 863
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
637-1114 |
3.56e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 637 RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQ 716
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 717 QEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcllqNEKIILEAALQAAKSGKEELDRGa 796
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV----EEAEALLEAGKCPECGQPVEGSP- 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 797 rrleegteetsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD------QLISELK 870
Cdd:PRK02224 466 ----------------HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEErredleELIAERR 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 871 ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEThlqslqfdkeqMVAVT 950
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-----------IRTLL 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 951 EANEALKKQIEELQqEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKayENAVGILSRRLQEALAAKEAADAELGQLRAQ 1030
Cdd:PRK02224 599 AAIADAEDEIERLR-EKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1031 GGSsdsslaLHERIQALEAELQavshsktllekelqevialtsqELEESREKVLELEDELQESRGFRKKIKRLEESNKKL 1110
Cdd:PRK02224 676 RDD------LQAEIGAVENELE----------------------ELEELRERREALENRVEALEALYDEAEELESMYGDL 727
|
....
gi 30089940 1111 ALEL 1114
Cdd:PRK02224 728 RAEL 731
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
404-1241 |
4.39e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 58.26 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 404 QEEMLQVLKEK-MRLEGQLEALSLEASQALKEKAELQAQLAA--------------LSTKLQAQVECSHSSQQRQDSLSS 468
Cdd:pfam01576 10 KEEELQKVKERqQKAESELKELEKKHQQLCEEKNALQEQLQAetelcaeaeemrarLAARKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 469 EVDTLKQSCWDLERAMTDLQNMLEAKNAslasSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQM---TALQS 545
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEA----ARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLeerISEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 546 QLQQVQLERTTLTSKLKASQ-AEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQL 624
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHeAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEEL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 625 TETQHRSMKEKGRIAAQLQGI---EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASL------- 694
Cdd:pfam01576 246 QAALARLEEETAQKNNALKKIrelEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQqelrskr 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 695 EQQLEQVKLTLLQR----DQQLEALQQEHL----DLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREd 766
Cdd:pfam01576 326 EQEVTELKKALEEEtrshEAQLQEMRQKHTqaleELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSE- 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 767 ticllqNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFl 846
Cdd:pfam01576 405 ------HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELL- 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 847 qqkvmveayRRDATSKDQLISELKAtrkrLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQ 926
Cdd:pfam01576 478 ---------QEETRQKLNLSTRLRQ----LEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 927 KERDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKmRRLGSDLTSAQKEMKtKHKAYENAVG-- 1004
Cdd:pfam01576 545 EGKKRLQRELEAL---TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ-RQLVSNLEKKQKKFD-QMLAEEKAISar 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1005 ILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESRE 1081
Cdd:pfam01576 620 YAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKnvhELERSKRALEQQVEEMKT 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1082 KVLELEDELQESRGFRkkiKRLEESNKKLALELEHEKGKLTGLG-----QSNAALREHNSILE----------TALAKRE 1146
Cdd:pfam01576 700 QLEELEDELQATEDAK---LRLEVNMQALKAQFERDLQARDEQGeekrrQLVKQVRELEAELEderkqraqavAAKKKLE 776
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1147 ADLVQLNLQVQAVLQRKEEEDRQMKHLvQALQASLEKEKEKVNSLKEQVAAAKVEaghNRRHFKAASLELSEVKKELQAK 1226
Cdd:pfam01576 777 LDLKELEAQIDAANKGREEAVKQLKKL-QAQMKDLQRELEEARASRDEILAQSKE---SEKKLKNLEAELLQLQEDLAAS 852
|
890
....*....|....*
gi 30089940 1227 EHLVQKLQAEADDLQ 1241
Cdd:pfam01576 853 ERARRQAQQERDELA 867
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
871-1359 |
9.21e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 56.67 E-value: 9.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 871 ATRKRLDSELKELRQELMQVHGEKRTAEAELSR----LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQM 946
Cdd:pfam05557 2 AELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 947 VAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnavgilsrRLQEALAAKEAADAELGQ 1026
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE--------ELQERLDLLKAKASEAEQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1027 LRAQGGSSDSSLALHE-RIQALEAELQAVSHSKTLLEKELQEVIALTSQE------------LEESREKVLELEDELQes 1093
Cdd:pfam05557 154 LRQNLEKQQSSLAEAEqRIKELEFEIQSQEQDSEIVKNSKSELARIPELEkelerlrehnkhLNENIENKLLLKEEVE-- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1094 rGFRKKIKRLEESNKKLA---LELEHEKGKLTG---LGQSNA-------ALREHNSIL---ETALAKREADLVQLNLQVQ 1157
Cdd:pfam05557 232 -DLKRKLEREEKYREEAAtleLEKEKLEQELQSwvkLAQDTGlnlrspeDLSRRIEQLqqrEIVLKEENSSLTSSARQLE 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1158 AVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEaghnrRHFKAASLElsEVKKELQAKEHLVQKLQaea 1237
Cdd:pfam05557 311 KARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKE-----RDGYRAILE--SYDKELTMSNYSPQLLE--- 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1238 ddlqiREGKHSQEIAQFQAELAEARAQLQllqkqldeqlskqpVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQG--- 1314
Cdd:pfam05557 381 -----RIEEAEDMTQKMQAHNEEMEAQLS--------------VAEEELGGYKQQAQTLERELQALRQQESLADPSYske 441
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 30089940 1315 -----RKELEGLQ---QLLQNVKSELEMAQEDLSMtQKDKFMLQAKVSELKNN 1359
Cdd:pfam05557 442 evdslRRKLETLElerQRLREQKNELEMELERRCL-QGDYDPKKTKVLHLSMN 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
402-1003 |
1.09e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 402 ETQEEMLQVLKEKMRLEgQLEALSLEASQALKEKAELQAQLAALstKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLE 481
Cdd:COG4913 239 RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 482 RAMTDLQNML-EAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRsmlskdntvhDLRQQMTALQSQLQQVQLERTTLTSK 560
Cdd:COG4913 316 ARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERER----------RRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 561 LKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAhiqvgqmtqagllehlklenvSLSQQLTETQHRsmkeKGRIAA 640
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR---------------------ELEAEIASLERR----KSNIPA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 641 QLQgieaDMLDQeaafmqIQEAKTMVEEDLQrrleeFEGE------RERLQRMAdsaasLEQQLEQVKLTLLQRDQQLEA 714
Cdd:COG4913 441 RLL----ALRDA------LAEALGLDEAELP-----FVGElievrpEEERWRGA-----IERVLGGFALTLLVPPEHYAA 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 715 LQQ--EHLDLMKQLTLtqEALQSREQSLDALQTHYDELQARL--------GELQGEAASREDTICL-----LQNEkiilE 779
Cdd:COG4913 501 ALRwvNRLHLRGRLVY--ERVRTGLPDPERPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDYVCVdspeeLRRH----P 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 780 AALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDA 859
Cdd:COG4913 575 RAITRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 860 TSKDQLIsELKATRKRLDselkELRQELMQVhgekRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL 939
Cdd:COG4913 655 EYSWDEI-DVASAEREIA----ELEAELERL----DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQA 725
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30089940 940 QFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 1003
Cdd:COG4913 726 EEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
565-1191 |
1.12e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 565 QAEISSLQSVRQWYQQQLALAQEARV-RLQGEMAHIQVGQMTQAGL---LEHLKLENVSLSQQLTETQhrsmKEKGRIAA 640
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLeaeLEELRAELARLEAELERLE----ARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 641 QLQGIEAdmldqeaafmQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHl 720
Cdd:COG4913 324 ELDELEA----------QIRGNGGDRLEQLEREIERLERELEERER---RRARLEALLAALGLPLPASAEEFAALRAEA- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 721 dlmkqltltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKsgkeeldrgarrle 800
Cdd:COG4913 390 ---------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR-------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 801 egteetsetlEKLREELAIKSGQV-----------------------------------EHLQQETAALKKQMQKIKEQF 845
Cdd:COG4913 447 ----------DALAEALGLDEAELpfvgelievrpeeerwrgaiervlggfaltllvppEHYAAALRWVNRLHLRGRLVY 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 846 LQQKVMVEAYRRDATSKDQLISELKAT----RKRLDSEL------------KELRQELM------QVHGEKR-------- 895
Cdd:COG4913 517 ERVRTGLPDPERPRLDPDSLAGKLDFKphpfRAWLEAELgrrfdyvcvdspEELRRHPRaitragQVKGNGTrhekddrr 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 896 ----------TAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvAVTEANEALKKqIEELQQ 965
Cdd:COG4913 597 rirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-------RLAEYSWDEID-VASAER 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 966 EARkAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAvgilsrrlqealaakeaaDAELGQLRAQGGssdsslALHERIQ 1045
Cdd:COG4913 669 EIA-ELEAELERLDASSDDLAALEEQLEELEAELEEL------------------EEELDELKGEIG------RLEKELE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1046 ALEAELQAVshsKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELE--------HE 1117
Cdd:COG4913 724 QAEEELDEL---QDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELEramrafnrEW 800
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 1118 KGKLTGLGQSNAALRE----HNSILETALAKREADLVQLnlqvqavlqRKEEEDRQMKHLVQALQASLEKEKEKVNSL 1191
Cdd:COG4913 801 PAETADLDADLESLPEylalLDRLEEDGLPEYEERFKEL---------LNENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
775-1361 |
1.13e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.90 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 775 KIILEAAlqaakSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKE----------- 843
Cdd:pfam02463 156 LEIEEEA-----AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLeleeeyllyld 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 844 ---------QFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQ- 913
Cdd:pfam02463 231 ylklneeriDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKv 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 914 --------HMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDL 985
Cdd:pfam02463 311 ddeeklkeSEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 986 TSAQKEMKTKHKAyENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKEL 1065
Cdd:pfam02463 391 KLKEEELELKSEE-EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1066 QEVIALTSQELEESREKVLELEDELQESRGFRKKIKRlEESNKKLALELEHEKGKLTGLGQSNAALREhnsILETALAKR 1145
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR-SGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1146 E-ADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVN---SLKEQVAAAKVEAGHNRRHFKAASLELSEVKK 1221
Cdd:pfam02463 546 StAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPlksIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1222 ELQAKEHLVQKLQAEADDLQIREGK-HSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREI 1300
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKgVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30089940 1301 QSLKQQLDLTEQQGRKELEGLQQLLQNV--------KSELEMAQEDLSMTQKDKFMLQAKVSELKNNMK 1361
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKineelkllKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
510-1260 |
1.13e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.90 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 510 EQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEAR 589
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 590 VRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQltetqhrsmKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEED 669
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRA---------RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 670 LQRRLE------EFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHlDLMKQLTLTQEALQSREQSLDAL 743
Cdd:TIGR00618 327 LMKRAAhvkqqsSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKELDIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 744 QthydelqarlgELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGArrleegteetsetleklREELAIKSGQ 823
Cdd:TIGR00618 406 Q-----------REQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI-----------------TCTAQCEKLE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 824 VEHLQQETAALKKQMQKIKeqflQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVhGEKRTAEAELSR 903
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQ----TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI-DNPGPLTRRMQR 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 904 LHREVAQVRQHMADLEGHLQSAQKER----DEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMr 979
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRaslkEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA- 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 980 rlgsdLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLalheRIQALEAELQAVSHSKT 1059
Cdd:TIGR00618 612 -----CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHAL----SIRVLPKELLASRQLAL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1060 LLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKlalELEHEKGKLtglgqsNAALREHNSILE 1139
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGS---DLAAREDAL------NQSLKELMHQAR 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1140 TALAKREADLVQLNLQVQAVLQRkeeeDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEV 1219
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQT----GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQE 829
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 30089940 1220 KKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAE 1260
Cdd:TIGR00618 830 EEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
569-987 |
1.32e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.50 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 569 SSLQSVRQWY--QQQLALAQEARVRLQGEMAHIQVGQmtqagllEHLKLENVSLSQQLTETQHrSMKEKGRIAAQLQGIE 646
Cdd:COG3096 286 RALELRRELFgaRRQLAEEQYRLVEMARELEELSARE-------SDLEQDYQAASDHLNLVQT-ALRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 647 ADMLDQEAAFMQIQEAktmvEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQehldlmkql 726
Cdd:COG3096 358 ELTERLEEQEEVVEEA----AEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEK--------- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 727 tlTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGArrleegteET 806
Cdd:COG3096 425 --ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQ--------AW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 807 SETLEKLRE--ELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQL---ISELKATRKRLDSELK 881
Cdd:COG3096 495 QTARELLRRyrSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELeelLAELEAQLEELEEQAA 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 882 ELRQELMQVHGEKRTAEAELSRLH------REVAQVRQHMADLEG-HLQSAQKERDEMET---HLQSLQFDKEQMVavtE 951
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAarapawLAAQDALERLREQSGeALADSQEVTAAMQQlleREREATVERDELA---A 651
|
410 420 430
....*....|....*....|....*....|....*.
gi 30089940 952 ANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTS 987
Cdd:COG3096 652 RKQALESQIERLSQPGGAEDPRLLALAERLGGVLLS 687
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
400-1262 |
2.14e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.82 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 400 AAETQEEMLQVLKEKMRlEGQLEAlsleasQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSlssEVDTLKQSCWD 479
Cdd:TIGR00606 187 ALETLRQVRQTQGQKVQ-EHQMEL------KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN---ELDPLKNRLKE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 480 LERAMTDLQNmLEAKNASLASSNNDLQVAEEQYQRLMAKV-----EDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLER 554
Cdd:TIGR00606 257 IEHNLSKIMK-LDNEIKALKSRKKQMEKDNSELELKMEKVfqgtdEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 555 TTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMahiqvgqmtQAGLLEHLKLENVSLSQQLTETQHRSMKE 634
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRL---------ELDGFERGPFSERQIKNFHTLVIERQEDE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 635 KGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAasleQQLEQVKLTLLQRDQQLEA 714
Cdd:TIGR00606 407 AKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL----QQLEGSSDRILELDQELRK 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 715 LQQEhLDLMKQLTLTqEALQSREQSLDALQTHYDE----LQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKE 790
Cdd:TIGR00606 483 AERE-LSKAEKNSLT-ETLKKEVKSLQNEKADLDRklrkLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSD 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 791 ELDRGA------RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQqkvmVEAYRRDATSKDQ 864
Cdd:TIGR00606 561 ELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS----YEDKLFDVCGSQD 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 865 LISELKATRKRLDSELKEL----------RQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMET 934
Cdd:TIGR00606 637 EESDLERLKEEIEKSSKQRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTES 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 935 HLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR--LQE 1012
Cdd:TIGR00606 717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVtiMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1013 ALAAKEAADAELGQLRAQGGSSDSSLA---LHERIQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESREKVLEL 1086
Cdd:TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTvqqVNQEKQEKQHELDTVVSKIELNRKliqDQQEQIQHLKSKTNELKSEKLQI 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1087 EDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNsilETALAKREADLVQLNLQVQAVLQRKEEE 1166
Cdd:TIGR00606 877 GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK---EELISSKETSNKKAQDKVNDIKEKVKNI 953
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1167 DRQMKHLVQALQASLEKE-KEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREG 1245
Cdd:TIGR00606 954 HGYMKDIENKIQDGKDDYlKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEV 1033
|
890
....*....|....*..
gi 30089940 1246 KhsQEIAQFQAELAEAR 1262
Cdd:TIGR00606 1034 E--EELKQHLKEMGQMQ 1048
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
832-1181 |
2.69e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 55.69 E-value: 2.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 832 AALKKQMQKIKEQFLQQKVmveayrrDATSKDQLISELK--ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHRE-V 908
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAE-------DKLVQQDLEQTLAllDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDnD 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 909 AQVRQHMADLEghLQSAQKERDEMETHLQSLQfdkeqmVAVTEANEALkkqieelqqearkaITEQKQKMRrlgsdltsA 988
Cdd:PRK11281 112 EETRETLSTLS--LRQLESRLAQTLDQLQNAQ------NDLAEYNSQL--------------VSLQTQPER--------A 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 989 QKEMktkhkaYENavgilSRRLQealaakeaadaelgQLRAQ-GGSSDSSLAL-HERIQALEAELQAVSHSKTLLEKELQ 1066
Cdd:PRK11281 162 QAAL------YAN-----SQRLQ--------------QIRNLlKGGKVGGKALrPSQRVLLQAEQALLNAQNDLQRKSLE 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1067 ---EVIALTSQELEESREKVLELEDELQESRGFRKKiKRLEESNKKLAlelEHEKGKLTGLGQSNAALR---EHNSILET 1140
Cdd:PRK11281 217 gntQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS-KRLTLSEKTVQ---EAQSQDEAARIQANPLVAqelEINLQLSQ 292
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 30089940 1141 ALAK---READLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASL 1181
Cdd:PRK11281 293 RLLKateKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSL 336
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
730-1305 |
3.35e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.29 E-value: 3.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 730 QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRgarRLEEGTEETSET 809
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR---YESEIKTAESDL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 810 LEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmveAYRRDATSKDQLISELKATRKRLDSELKELrQELMQ 889
Cdd:PRK01156 266 SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYF--------KYKNDIENKKQILSNIDAEINKYHAIIKKL-SVLQK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 890 VHGEKRTAEAELSRLHREVAQVRQHMADLEGHL---QSAQKERDEMETHLQSLQFDKEQMVAVTEAN-EALKKQIEELqq 965
Cdd:PRK01156 337 DYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKNIERMSAFISEILKIQEIDpDAIKKELNEI-- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 966 eaRKAITEQKQKMrrlgSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLalHERIQ 1045
Cdd:PRK01156 415 --NVKLQDISSKV----SSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRL--EEKIR 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1046 ALEAELQAVSHSKTLLEKELQEviaLTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKlalelehekgkltglg 1125
Cdd:PRK01156 487 EIEIEVKDIDEKIVDLKKRKEY---LESEEINKSINEYNKIESARADLEDIKIKINELKDKHDK---------------- 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1126 qSNAALREHNSI-LETALAKRE----ADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQaSLEKEKEKVNSLKEQVAAAKV 1200
Cdd:PRK01156 548 -YEEIKNRYKSLkLEDLDSKRTswlnALAVISLIDIETNRSRSNEIKKQLNDLESRLQ-EIEIGFPDDKSYIDKSIREIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1201 EAGHNrrhfkaasleLSEVKKELQAKEHLVQKLQ----------AEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQK 1270
Cdd:PRK01156 626 NEANN----------LNNKYNEIQENKILIEKLRgkidnykkqiAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKA 695
|
570 580 590
....*....|....*....|....*....|....*
gi 30089940 1271 QLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQ 1305
Cdd:PRK01156 696 NRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
535-765 |
3.42e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 535 DLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQvgqmtqagllEHLK 614
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR----------AELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 615 LENVSLSQQLTETQhrSMKEKGRIAAQLQGieADMLDQEAAFMQIQEaktmVEEDLQRRLEEFEGERERLQRMADSAASL 694
Cdd:COG4942 101 AQKEELAELLRALY--RLGRQPPLALLLSP--EDFLDAVRRLQYLKY----LAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30089940 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLtltQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 765
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARL---EKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
633-1113 |
4.13e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 4.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 633 KEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRmadsAASLEQQLEQVKLTLlqRDQQL 712
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE-LEKRLEELEERHELYEE----AKAKKEELERLKKRL--TGLTP 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 713 EALQQEHLDLMKQLTLTQEALqsreqsldalqthyDELQARLGELQGEAASREDTIcllqnekIILEAALQAAKSGKEEL 792
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEI--------------SKITARIGELKKEIKELKKAI-------EELKKAKGKCPVCGREL 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 793 DRGARrlEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT 872
Cdd:PRK03918 446 TEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 873 RKrldsELKELRQELMQVHGEKRTAEAELSRLhrevAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVA--VT 950
Cdd:PRK03918 524 AE----EYEKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEerLK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 951 EANEALKKQIEELQQEARKAITEQKQKmrRLGSDLTSAQKEMKTKHKAYENavgiLSRRLQEALAAKEAADAElgqlraq 1030
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEREEKELK--KLEEELDKAFEELAETEKRLEE----LRKELEELEKKYSEEEYE------- 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1031 gGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIAlTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKL 1110
Cdd:PRK03918 663 -ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE-ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER 740
|
...
gi 30089940 1111 ALE 1113
Cdd:PRK03918 741 ALS 743
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
397-775 |
4.46e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 397 ESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTK---LQAQVECSHSSQQRQDSLSSEVDTL 473
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERleeLEERLEELRELEEELEELEAELAEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 474 KQscwDLERAMTDLQNMLEaknaslassnNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLE 553
Cdd:COG4717 176 QE---ELEELLEQLSLATE----------EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 554 RT--------------------------TLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 607
Cdd:COG4717 243 ERlkearlllliaaallallglggsllsLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 608 GLLEHLKLENvSLSQQLTETQHRSMKEKGRIAAQLQGIEADmLDQEAAFMQIQE----AKTMVEEDLQRRLEEFEGERER 683
Cdd:COG4717 323 ELLAALGLPP-DLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAAllaeAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 684 LQRMADSAASLEQQL------------EQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ--SREQSLDALQTHYDE 749
Cdd:COG4717 401 KEELEELEEQLEELLgeleellealdeEELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEE 480
|
410 420
....*....|....*....|....*.
gi 30089940 750 LQARLGELQGEAASREDTICLLQNEK 775
Cdd:COG4717 481 LKAELRELAEEWAALKLALELLEEAR 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
671-991 |
1.02e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 671 QRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQ----------------EHLDLMKQLTLTQEALQ 734
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvasaereiaELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 735 SREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLR 814
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 815 EELaikSGQVEHLQQETAALKKQMQKIKEQFLQQkvmveaYRRDATSKDQLISELKATRKRLD----SELKELRQELMQV 890
Cdd:COG4913 769 ENL---EERIDALRARLNRAEEELERAMRAFNRE------WPAETADLDADLESLPEYLALLDrleeDGLPEYEERFKEL 839
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 891 hgEKRTAEAEL----SRLHREVAQVRQHMADLEGHLQSAQKERDemeTHLQsLQFDKEQMVAVTEANEALKKQIEELQQE 966
Cdd:COG4913 840 --LNENSIEFVadllSKLRRAIREIKERIDPLNDSLKRIPFGPG---RYLR-LEARPRPDPEVREFRQELRAVTSGASLF 913
|
330 340
....*....|....*....|....*
gi 30089940 967 ARKAITEQKQKMRRLGSDLTSAQKE 991
Cdd:COG4913 914 DEELSEARFAALKRLIERLRSEEEE 938
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
814-1338 |
1.11e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 814 REELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRD-ATSKDQLISELKAtrkrldsELKELRQELMQVHG 892
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQiRGNGGDRLEQLER-------EIERLERELEERER 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 893 EKRTAEAELSRLH-----------REVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIE 961
Cdd:COG4913 360 RRARLEALLAALGlplpasaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 962 ELQQEARKAITEQkqkmrrLGSDLTSAQ-----KEMKTKHKAYENAV----GILSRRL----QEALAAKEAADAELGQLR 1028
Cdd:COG4913 440 ARLLALRDALAEA------LGLDEAELPfvgelIEVRPEEERWRGAIervlGGFALTLlvppEHYAAALRWVNRLHLRGR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1029 AQGgssdsslalhERIQALEAELQAVS-HSKTLLEK---ELQEVIALTSQELEESREKVL-ELEDELQESR------GFR 1097
Cdd:COG4913 514 LVY----------ERVRTGLPDPERPRlDPDSLAGKldfKPHPFRAWLEAELGRRFDYVCvDSPEELRRHPraitraGQV 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1098 KKIKRLEESNKKLALELEHEkgkltgLGQSNAALREHnsiLETALAKREADLVQLNLQVQAvLQRKEEEDRQMKHLVQAL 1177
Cdd:COG4913 584 KGNGTRHEKDDRRRIRSRYV------LGFDNRAKLAA---LEAELAELEEELAEAEERLEA-LEAELDALQERREALQRL 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1178 QASLEKEKEkVNSLKEQVAAAKVEaghnRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAE 1257
Cdd:COG4913 654 AEYSWDEID-VASAEREIAELEAE----LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1258 LAEARAQLQLLQKQLDEQLskqpvgNQEMENLKWEVDQKEREiQSLKQQLdlteqqgRKELEGLQQLLQNVKSELEMAQE 1337
Cdd:COG4913 729 LDELQDRLEAAEDLARLEL------RALLEERFAAALGDAVE-RELRENL-------EERIDALRARLNRAEEELERAMR 794
|
.
gi 30089940 1338 D 1338
Cdd:COG4913 795 A 795
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
834-1362 |
1.12e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 834 LKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQ 913
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 914 HMADLEGHLQSAQKERDEMETH----LQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKmrrlgsdltsaQ 989
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNidkfLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI-----------Q 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 990 KEMKTKHKAYenavgilsRRLQEALAAKEAADAELGQLRAQggssdsslalherIQALEAELQAVSHSKTLLEKELQEVi 1069
Cdd:TIGR04523 187 KNIDKIKNKL--------LKLELLLSNLKKKIQKNKSLESQ-------------ISELKKQNNQLKDNIEKKQQEINEK- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1070 altSQELEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLAlelehekgkltglgQSNAALREHNSILETALAKREAD 1148
Cdd:TIGR04523 245 ---TTEISNTQTQLNQLKDEQNKiKKQLSEKQKELEQNNKKIK--------------ELEKQLNQLKSEISDLNNQKEQD 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1149 LvqlNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEH 1228
Cdd:TIGR04523 308 W---NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1229 LVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLD 1308
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 30089940 1309 LTEQQgrkeLEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKT 1362
Cdd:TIGR04523 465 SLETQ----LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
560-1107 |
1.14e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 560 KLKASQAEISSLQSVRQWY--QQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRsmkEKGR 637
Cdd:COG4913 266 AARERLAELEYLRAALRLWfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 638 IAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQvklTLLQRDQQLEALQQ 717
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRR 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 718 EHLDLMKQLtltqEALQSREQSLDAlqtHYDELQARLGELQGEAASREDTIC-LLQ----NEK----------------I 776
Cdd:COG4913 420 ELRELEAEI----ASLERRKSNIPA---RLLALRDALAEALGLDEAELPFVGeLIEvrpeEERwrgaiervlggfaltlL 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 777 ILEAALQAAKS------GKEELD-RGARRLEEGTEETSETLEKLREELAIKSGQ--------------------VEHLQQ 829
Cdd:COG4913 493 VPPEHYAAALRwvnrlhLRGRLVyERVRTGLPDPERPRLDPDSLAGKLDFKPHPfrawleaelgrrfdyvcvdsPEELRR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 830 ETAALKKQMQkIKeqflQQKVMVEAYRRDATSKDQLI-SELKATRKRLDSELKELRQELmqvhgekRTAEAELSRLHREV 908
Cdd:COG4913 573 HPRAITRAGQ-VK----GNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEEL-------AEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 909 AQVRQHMADLEGHLQSAQKERD--EMETHLQSLQfdkEQMVAVTEAN---EALKKQIEELQQE---ARKAITEQKQKMRR 980
Cdd:COG4913 641 DALQERREALQRLAEYSWDEIDvaSAEREIAELE---AELERLDASSddlAALEEQLEELEAEleeLEEELDELKGEIGR 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 981 LGSDLTSAQKEMKTKHKAYENAVGIlsrrlqEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAElqavshsktl 1060
Cdd:COG4913 718 LEKELEQAEEELDELQDRLEAAEDL------ARLELRALLEERFAAALGDAVERELRENLEERIDALRAR---------- 781
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 30089940 1061 LEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESN 1107
Cdd:COG4913 782 LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDG 828
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
365-963 |
1.32e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 365 LQAAAAEHQDQGQEVNGEVRSRRDSICSSVSlESSAAETQEemLQVLKEKM-RLEGQLEALSLEASQALKEKAE------ 437
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWK-EKRDELNGE--LSAADAAVaKDRSELEALEDQHGAFLDADIEtaaadq 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 438 -----LQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDtlKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQY 512
Cdd:pfam12128 347 eqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 513 ------QRLMAKVEDMQ--------RSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWY 578
Cdd:pfam12128 425 reqleaGKLEFNEEEYRlksrlgelKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQA 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 579 QQQLALAQEARVRLQGEMAHIQVGQMTQAG-LLEHLKLENVSLSQQL-----TETQHRSMKEKGRIAAQLQG---IEADM 649
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELELQLFPQAGtLLHFLRKEAPDWEQSIgkvisPELLHRTDLDPEVWDGSVGGelnLYGVK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 650 LDQEAafMQIQEAKTMvEEDLQRRLEEFEgerERLQRMADSAASLEQQLEQVKLTLLQRDQQLE----ALQQEHLDLM-- 723
Cdd:pfam12128 585 LDLKR--IDVPEWAAS-EEELRERLDKAE---EALQSAREKQAAAEEQLVQANGELEKASREETfartALKNARLDLRrl 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 724 ------------KQLTLTQEALQSREQSLDALQTHYD-ELQARLGELQGEaaSREDTICLLQNEKII---LEAALQAAKS 787
Cdd:pfam12128 659 fdekqsekdkknKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQ--KREARTEKQAYWQVVegaLDAQLALLKA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 788 GKEELDRGARRLEEGTEETSETLEKLR----EELAIKSGQVEHLQQETAALKKQMQKIKE--QFLQQKVMVEAYRRDATS 861
Cdd:pfam12128 737 AIAARRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfDWYQETWLQRRPRLATQL 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 862 KD--QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL 939
Cdd:pfam12128 817 SNieRAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLE 896
|
650 660
....*....|....*....|....
gi 30089940 940 QFDKEQMVAVteanEALKKQIEEL 963
Cdd:pfam12128 897 DLKLKRDYLS----ESVKKYVEHF 916
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
400-1030 |
1.62e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 400 AAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALStKLQAQVEcshsSQQRQDSLSSEVDTLKQSCWD 479
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE-ETQERIN----RARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 480 LERAMTDLQNM------LEAKNASLASSNNDLQVAEEQYQRLMAKvEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLE 553
Cdd:TIGR00618 309 AQRIHTELQSKmrsrakLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 554 RTTLTSKLKASQAEISSLQSVRqwyQQQLALAQEARVrLQGEMAHIQVGQMTQAGLLEHLKL--ENVSLSQQLTETQHRS 631
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQ---ATIDTRTSAFRD-LQGQLAHAKKQQELQQRYAELCAAaiTCTAQCEKLEKIHLQE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 632 MKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQ 711
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 712 LEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEE 791
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 792 ldrgARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETaaLKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKA 871
Cdd:TIGR00618 624 ----EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQER--VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 872 TRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQvrqhmaDLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTE 951
Cdd:TIGR00618 698 MLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAA------REDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30089940 952 ANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 1030
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
863-1010 |
2.19e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.69 E-value: 2.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 863 DQLISELKATRKRLDSELKELRQE-------LMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERD----- 930
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDElaalearLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 931 -EMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR 1009
Cdd:COG1579 96 kEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
.
gi 30089940 1010 L 1010
Cdd:COG1579 176 L 176
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
852-1426 |
2.55e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 852 VEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA-EAELSRLHREVAQVRQHMADLEGHLQSAQKERD 930
Cdd:PTZ00121 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 931 EMETHLQSLQFDKEQMVAVTEAN---EALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILS 1007
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKkkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1008 RRLQEALAAKEAADAELGQLRAQggssDSSLALHERIQALEAELQA--VSHSKTLLEKELQEVIALTSQELEESREKVLE 1085
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1086 LEDELQESRGFRKKIKRLEESNKKLALELEHEKGKltglgqsnaalREHNSILETALAKREAD-LVQLNLQVQAVLQRKE 1164
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK-----------KKADEAKKAAEAKKKADeAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1165 EEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQ-AKEHLVQKLQAEADDLQIR 1243
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEeARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1244 EGKHSQE----IAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENL--KWEVDQKEREIQSLKQQLDLTEQQGRKE 1317
Cdd:PTZ00121 1611 EAKKAEEakikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1318 LEGLQQLLQNVKSELEMAQEDLSMTQKDKfmlQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATP 1397
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
570 580
....*....|....*....|....*....
gi 30089940 1398 IKipdcpvpaslLEELLRPPPAVSKEPLK 1426
Cdd:PTZ00121 1768 KK----------AEEIRKEKEAVIEEELD 1786
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1036-1263 |
2.74e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1036 SSLALHERIQALEAELQAVSHSKTLLEKELQEV---IALTSQELEESREKVLELEDELQESRG----FRKKIKRLEESNK 1108
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALkkeEKALLKQLAALERRIAALARRIRALEQelaaLEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1109 KLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKV 1188
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30089940 1189 NSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQiregkhsQEIAQFQAELAEARA 1263
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE-------ALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
554-970 |
3.76e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 554 RTTLTSKLKASQAEISSLQ-SVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlenvSLSQQLTETQHRSM 632
Cdd:COG4717 44 RAMLLERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE----ELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 633 KekgriAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRMADSAASLEQQLEQ--------VKLT 704
Cdd:COG4717 120 K-----LEKLLQLLPLYQELEALEAELAELPERLEE-LEERLEELRELEEELEELEAELAELQEELEElleqlslaTEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 705 LLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQ---------------ARLGELQGEAASREDTIC 769
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleerlkearlllliaAALLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 770 ------------------LLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQET 831
Cdd:COG4717 274 tiagvlflvlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 832 AALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKR--LDSELKELRQELMQVHGEKRT--AEAELSRLHRE 907
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYqeLKEELEELEEQLEELLGELEEllEALDEEELEEE 433
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30089940 908 VAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEAnEALKKQIEELQQEARKA 970
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL-EELKAELRELAEEWAAL 495
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
598-758 |
5.70e-06 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 50.05 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 598 HIQVGQMTQAG-LLehLKLENVSLSQQLTETQHRsmkekgriAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEE 676
Cdd:COG1566 60 LVKEGDRVKKGqVL--ARLDPTDLQAALAQAEAQ--------LAAAEAQLARLEAELGAEAEIAAAEAQLAA-AQAQLDL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 677 FEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGE 756
Cdd:COG1566 129 AQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQ-LAQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
..
gi 30089940 757 LQ 758
Cdd:COG1566 208 TT 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-607 |
6.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 6.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 391 CSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEV 470
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 471 DTLKQscwDLERAMTDLQNMLEA--------------KNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDL 536
Cdd:COG4942 93 AELRA---ELEAQKEELAELLRAlyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30089940 537 RQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 607
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
542-787 |
6.38e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 6.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 542 ALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLS 621
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 622 QQLTETQHRsmkekgrIAAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAASLEQQLEQV 701
Cdd:COG4942 97 AELEAQKEE-------LAELLRALYRLGRQPPLALLLSPEDF----LDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 702 KLTLLQRDQQLEALQQEHLDLMKQLtltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcllqnEKIILEAA 781
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAAL---EALKAERQKLLARLEKELAELAAELAELQQEAEELEALI-----ARLEAEAA 237
|
....*.
gi 30089940 782 LQAAKS 787
Cdd:COG4942 238 AAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
378-980 |
8.37e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 378 EVNGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAqLAALSTKLQAQVEcsh 457
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELE--- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 458 ssqqrqdSLSSEVDTLKQSCWDLERAMTDLQ---NMLEAKNASLassnNDLQVAEEQYQRL---MAKVEDMQRSMLSKDN 531
Cdd:PRK03918 249 -------SLEGSKRKLEEKIRELEERIEELKkeiEELEEKVKEL----KELKEKAEEYIKLsefYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 532 TVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARvRLQGEMAHIQVgqmtqagllE 611
Cdd:PRK03918 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTP---------E 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 612 HLKLENVSLSQQLTETQHRSMKEKGRIaAQLQGIEADMldqEAAFMQIQEAKT--------MVEEDLQRRLEEFEGERER 683
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARI-GELKKEIKEL---KKAIEELKKAKGkcpvcgreLTEEHRKELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 684 LQRMADSAASLEQQLEQVKL---TLLQRDQQLEALQQehldLMKQLTLTQEALQSRE-QSLDALQTHYDELQARLGELQG 759
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELReleKVLKKESELIKLKE----LAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 760 EAASREDTI---CLLQNEKIILEAALQAAKSGKEELdrgarrleegteetsetlEKLREELAIKSgqVEHLQQETaalkK 836
Cdd:PRK03918 540 EIKSLKKELeklEELKKKLAELEKKLDELEEELAEL------------------LKELEELGFES--VEELEERL----K 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 837 QMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRL---DSELKELRQELMQVhgEKRTAEAELSRLHREVAQVRQ 913
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELaetEKRLEELRKELEEL--EKKYSEEEYEELREEYLELSR 673
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30089940 914 HMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELqQEARKAITEQKQKMRR 980
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1138-1449 |
9.84e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 9.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1138 LETALAKREADLVQLNLQVQAVLQRKE--EEDRQMKHLVQALQaslekekekVNSLKEQVAAAKVEAGHNRRHFKAASLE 1215
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKAERYKElkAELRELELALLVLR---------LEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1216 LSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELA---EARAQLQLLQKQLDEQLSKQPvgnQEMENLKWE 1292
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQilrERLANLERQLEELEAQLEELE---SKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1293 VDQKEREIQSLKQQLDLTEQQG---RKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNmKTLLQQNQQ 1369
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELeelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-LERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1370 LKLDLRRGAAKTRKEPKGEASSSNPATPIKIPD----CPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQ 1445
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEelqeELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
....
gi 30089940 1446 MEEH 1449
Cdd:TIGR02168 498 QENL 501
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
710-1132 |
1.01e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 710 QQLEALQQEhldlMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDticllqneKIILEAALQAAKSGK 789
Cdd:COG4717 71 KELKELEEE----LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK--------LLQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 790 EELDRGARRLEEGTEETSETLEkLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVM-VEAYRRDATSKDQLISE 868
Cdd:COG4717 139 AELAELPERLEELEERLEELRE-LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEeLEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 869 LKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLhreVAQVRQHMADLEGHLQSAQKERDEMET------HLQSLQFD 942
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLL---IAAALLALLGLGGSLLSLILTIAGVLFlvlgllALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 943 KEQMVAVTEANEA-LKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAd 1021
Cdd:COG4717 295 REKASLGKEAEELqALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA- 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1022 aelgQLRAQGGSSD-----SSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTS-----QELEESREKVLELEDEL- 1090
Cdd:COG4717 374 ----ALLAEAGVEDeeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELEEELEELEEELe 449
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 30089940 1091 ---QESRGFRKKIKRLEESNK--KLALELEHEKGKLTGLGQSNAALR 1132
Cdd:COG4717 450 elrEELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALK 496
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
667-1330 |
1.07e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 667 EEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQrDQQLEALQQEHLDLmkqltlTQEALQSREQSLDA-LQT 745
Cdd:pfam12128 229 DIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKS-DETLIASRQEERQE------TSAELNQLLRTLDDqWKE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 746 HYDELQARLGELQGEAASREDTICLLQNE-KIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKL----REELAIK 820
Cdd:pfam12128 302 KRDELNGELSAADAAVAKDRSELEALEDQhGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHqdvtAKYNRRR 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 821 SGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSK-----DQLISELKATRKRLDSELKELRQELMQVHGE-- 893
Cdd:pfam12128 382 SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElreqlEAGKLEFNEEEYRLKSRLGELKLRLNQATATpe 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 894 ----KRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL-QFDKEQMVAVTEANEALKKQIEELQQEAR 968
Cdd:pfam12128 462 lllqLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsRRLEERQSALDELELQLFPQAGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 969 KAITEQKQKMRRLGSDL----TSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAElgQLRAQGGSSDSSL-ALHER 1043
Cdd:pfam12128 542 KEAPDWEQSIGKVISPEllhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE--ELRERLDKAEEALqSAREK 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1044 IQALEAELQAVShsKTLLEKELQEVIALTSqeLEESREKVLELEDELQ-ESRGFRKKIKRLEESNKKLALELEHEKgKLT 1122
Cdd:pfam12128 620 QAAAEEQLVQAN--GELEKASREETFARTA--LKNARLDLRRLFDEKQsEKDKKNKALAERKDSANERLNSLEAQL-KQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1123 GLGQSNAALREHNSILETALAKREADLV-------QLNLQVQAVLQRKEEEDRQMKHLVQALQASLEK---EKEKVNSLK 1192
Cdd:pfam12128 695 DKKHQAWLEEQKEQKREARTEKQAYWQVvegaldaQLALLKAAIAARRSGAKAELKALETWYKRDLASlgvDPDVIAKLK 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1193 EQVAA--AKVEAGHNRRHfKAASLELSEVKKELQAKEHL---VQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQL 1267
Cdd:pfam12128 775 REIRTleRKIERIAVRRQ-EVLRYFDWYQETWLQRRPRLatqLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEK 853
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30089940 1268 LQKQLDEQLSKQPVGNQEMENLK--WEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKS 1330
Cdd:pfam12128 854 QQVRLSENLRGLRCEMSKLATLKedANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKN 918
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
616-958 |
2.13e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 616 ENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEaafmqiqeaKTMVEEDLQRRLEEFEGERERLQRMADSAASLE 695
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQE---------KEEKAREVERRRKLEEAEKARQAEMDRQAAIYA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 696 QQleqvKLTLLQRDQQLEALQQE----HLDLMKQLTLTQEALQSREqsLDALQTHYDELQARLgeLQGEAASREDTICLL 771
Cdd:pfam17380 338 EQ----ERMAMERERELERIRQEerkrELERIRQEEIAMEISRMRE--LERLQMERQQKNERV--RQELEAARKVKILEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 772 QNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALK-KQMQKIKEQflQQKV 850
Cdd:pfam17380 410 ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKrKKLELEKEK--RDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 851 MVEAYRRDATSKD-----QLISELKATRKRLDSELKElRQELMQVHGEKRTAEAElSRLHREVAQVRQhmadleghLQSA 925
Cdd:pfam17380 488 RAEEQRRKILEKEleerkQAMIEEERKRKLLEKEMEE-RQKAIYEEERRREAEEE-RRKQQEMEERRR--------IQEQ 557
|
330 340 350
....*....|....*....|....*....|...
gi 30089940 926 QKERDEMETHLQSLQFDKEQMVAVTEANEALKK 958
Cdd:pfam17380 558 MRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
486-993 |
2.28e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 486 DLQNMLEAKNaSLASSNndLQVAEEQYQRLMAKVED----MQRSMLSKDNTVHDLR-------QQMTALQSQLQQVQLER 554
Cdd:pfam05483 268 DKANQLEEKT-KLQDEN--LKELIEKKDHLTKELEDikmsLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 555 TTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAH--IQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 632
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKksSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 633 KEKGRIAAQLQGIEADML------DQEAAFMQIQ-EAKTMVEEDLQRRLEEF--EGERERLQRMADSAASLEQQLEQVKL 703
Cdd:pfam05483 425 KQFEKIAEELKGKEQELIfllqarEKEIHDLEIQlTAIKTSEEHYLKEVEDLktELEKEKLKNIELTAHCDKLLLENKEL 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 704 TllqrdqqlealqQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEkiiLEAALQ 783
Cdd:pfam05483 505 T------------QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE---VKCKLD 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 784 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 863
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 864 QLISELKATRKRlDSELKELRQELMQVHGEKRTAEA-ELSRLHREVAQVRQH-----MADLEGHLQSAQKERDEMETHLq 937
Cdd:pfam05483 650 QKFEEIIDNYQK-EIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHkiaemVALMEKHKHQYDKIIEERDSEL- 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30089940 938 SLQFDKEQmvAVTEANEALKKQIEELQQE---ARKAIT---EQKQKMRRLGSDLTSAQKEMK 993
Cdd:pfam05483 728 GLYKNKEQ--EQSSAKAALEIELSNIKAEllsLKKQLEiekEEKEKLKMEAKENTAILKDKK 787
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
839-992 |
2.49e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 839 QKIKEQFLQQKVMVEAYRRDA-TSKDQLISELKatrkrldSELKELRQELmqvHGEKRTAEAELSRLHRevaQVRQHMAD 917
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAeAIKKEALLEAK-------EEIHKLRNEF---EKELRERRNELQKLEK---RLLQKEEN 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30089940 918 LEGHLQSAQKERDEMETHLQSLqfdkeqmvavteanEALKKQIEELQQEARKAITEQKQKMRRLgSDLTSAQ-KEM 992
Cdd:PRK12704 98 LDRKLELLEKREEELEKKEKEL--------------EQKQQELEKKEEELEELIEEQLQELERI-SGLTAEEaKEI 158
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
668-1178 |
2.70e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.05 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 668 EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHY 747
Cdd:pfam10174 268 EDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 748 DELQARLGELQGEAASREDTICLLQNEKIILEAALQAAksgKEELDRGARRLEEGTEETSETLEKLRE---ELAIKSGQV 824
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDL---KDMLDVKERKINVLQKKIENLQEQLRDkdkQLAGLKERV 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 825 EHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRldsELKELRQELMQVHGEKRTAEAELSRL 904
Cdd:pfam10174 425 KSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKK---ENKDLKEKVSALQPELTEKESSLIDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 905 HREVAQVRQHMADLEGHLQS---AQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEA---RKAITEQKQKM 978
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSleiAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVaryKEESGKAQAEV 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 979 RRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSslalheriQALEAELQAVSHSK 1058
Cdd:pfam10174 582 ERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLE--------EARRREDNLADNSQ 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1059 TLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKrlEESNKKLALELEHEKGKLTglgqsnAALREHNS-- 1136
Cdd:pfam10174 654 QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR--AERRKQLEEILEMKQEALL------AAISEKDAni 725
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 30089940 1137 -ILETALAKREADlvqlnlqVQAVLQRKEEEDRQMKHLVQALQ 1178
Cdd:pfam10174 726 aLLELSSSKKKKT-------QEEVMALKREKDRLVHQLKQQTQ 761
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1072-1357 |
2.74e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1072 TSQELEESREKVLELEDELQEsrgFRKKIKRLE------ESNKKLALELEHEKGKLTGLG--QSNAALREHNSILETALA 1143
Cdd:COG1196 177 AERKLEATEENLERLEDILGE---LERQLEPLErqaekaERYRELKEELKELEAELLLLKlrELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1144 KREADLVQLNlQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKEL 1223
Cdd:COG1196 254 ELEELEAELA-ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1224 QAKEHLVQKLQAEADDLQIREgkhsQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSL 1303
Cdd:COG1196 333 EELEEELEELEEELEEAEEEL----EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 30089940 1304 KQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELK 1357
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
823-1009 |
2.95e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 823 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELS 902
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 903 RLHREVAQV--------RQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQM---VAVTEANEALKKQIEELQQEARKAI 971
Cdd:COG4942 101 AQKEELAELlralyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAeelRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 30089940 972 TEQKQKMRRLGSDLTSAQK---EMKTKHKAYENAVGILSRR 1009
Cdd:COG4942 181 AELEEERAALEALKAERQKllaRLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
620-931 |
3.46e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 620 LSQQLTETQhRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAkTMVEED---LQRRLEEFEGERERLQRMADSAASLEQ 696
Cdd:COG4913 615 LEAELAELE-EELAEAEERLEALEAELDALQERREALQRLAEY-SWDEIDvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 697 QLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDAL-----QTHYDELQARLGELQGEAASREdticLL 771
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAedlarLELRALLEERFAAALGDAVERE----LR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 772 QNekiiLEAALQAAKSGKEELDRGARRL--------EEGTEETSETLEKLREELAI-----KSGQVEHLQQETAALKKQM 838
Cdd:COG4913 769 EN----LEERIDALRARLNRAEEELERAmrafnrewPAETADLDADLESLPEYLALldrleEDGLPEYEERFKELLNENS 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 839 QKIKEQFLQQkvmVEAYRRDATSK-DQLISELKAT------------RKRLDSELKELRQELMQVHGEKRTAEAELSRLH 905
Cdd:COG4913 845 IEFVADLLSK---LRRAIREIKERiDPLNDSLKRIpfgpgrylrleaRPRPDPEVREFRQELRAVTSGASLFDEELSEAR 921
|
330 340
....*....|....*....|....*..
gi 30089940 906 REvaQVRQHMADLEG-HLQSAQKERDE 931
Cdd:COG4913 922 FA--ALKRLIERLRSeEEESDRRWRAR 946
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
611-1201 |
4.77e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 4.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 611 EHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEG---ERERLQRM 687
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKkaeEAKKADEA 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 688 ADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDT 767
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 768 ICLLQNEKIILEAAlqAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKsgQVEHLQQETAALKKQMQKIKEQFLQ 847
Cdd:PTZ00121 1401 EEDKKKADELKKAA--AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 848 QKVMvEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHgEKRTAE----AELSRLHREVAQVRQHMADLEGHLQ 923
Cdd:PTZ00121 1477 KKAE-EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADeakkAEEAKKADEAKKAEEKKKADELKKA 1554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 924 SAQKERDEMETHLQSLQFDKEQMVAVTEANEAlkKQIEELQQEARKAITEQKQKMR----------RLGSDLTSAQKEMK 993
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEA--KKAEEARIEEVMKLYEEEKKMKaeeakkaeeaKIKAEELKKAEEEK 1632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 994 TKHKAYENAVGILSRRLQEALAAKEAADAELGQLrAQGGSSDSSLAlhERIQALEAELQAVSHSKTLLEKELQEVIALTS 1073
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE-AKKAEEDKKKA--EEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1074 QELEESReKVLELEDELQESRGFRKKIKRLEESNKKLALEL---EHEKGKLTGLGQSNAALREHNSILETALAKREADlv 1150
Cdd:PTZ00121 1710 KEAEEKK-KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD-- 1786
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 30089940 1151 qlnlqvQAVLQRKEEEDRQMKHLVQALQASLEKEKEK---VNSLKEQVAAAKVE 1201
Cdd:PTZ00121 1787 ------EEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvINDSKEMEDSAIKE 1834
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
508-1256 |
4.78e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 508 AEEQYQRLMA----KVEDMQRSmLSKDNTVHD-----LRQQMTALQSQLQQVQLERTTLtsklkasqAEISSLQSVRQwy 578
Cdd:pfam15921 72 GKEHIERVLEeyshQVKDLQRR-LNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAM--------ADIRRRESQSQ-- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 579 qqqlalaQEARVRLQGEMAHIQVGQMTQAGLLEhlklenvSLSQQLTETQHRSMKEKGriaaQLQGIEADMLD-QEAAFM 657
Cdd:pfam15921 141 -------EDLRNQLQNTVHELEAAKCLKEDMLE-------DSNTQIEQLRKMMLSHEG----VLQEIRSILVDfEEASGK 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 658 QIQEAKTM-------VEEDLQRRLEEFEGErerLQRMADSAASLEQQLEQVKltlLQRDQQLEALQQEHLDLMKQLT--- 727
Cdd:pfam15921 203 KIYEHDSMstmhfrsLGSAISKILRELDTE---ISYLKGRIFPVEDQLEALK---SESQNKIELLLQQHQDRIEQLIseh 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 728 ------LTQEALQSREQS------LDALQT-----------HYDELQARLGELQGE--AASR--EDTICLLQNEKIILEA 780
Cdd:pfam15921 277 eveitgLTEKASSARSQAnsiqsqLEIIQEqarnqnsmymrQLSDLESTVSQLRSElrEAKRmyEDKIEELEKQLVLANS 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 781 ALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQ--------------VEHLQQE-----------TAALK 835
Cdd:pfam15921 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRElddrnmevqrlEALLK 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 836 KQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRT-----------------AE 898
Cdd:pfam15921 437 AMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTvsdltaslqekeraieaTN 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 899 AELSRLHREV---AQVRQHMADLEGHLQSAQKERDEMethlqslqfdKEQMVAVTEANEALKKQIEELQ----QEARKAI 971
Cdd:pfam15921 517 AEITKLRSRVdlkLQELQHLKNEGDHLRNVQTECEAL----------KLQMAEKDKVIEILRQQIENMTqlvgQHGRTAG 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 972 TEQKQKmrrlgsdltsAQKEMKtkhkayenavgILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAEL 1051
Cdd:pfam15921 587 AMQVEK----------AQLEKE-----------INDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERL 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1052 QAVSHSKTLLEKELQEVialtsqelEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLAL-------ELEHEKGKLTG 1123
Cdd:pfam15921 646 RAVKDIKQERDQLLNEV--------KTSRNELNSLSEDYEVlKRNFRNKSEEMETTTNKLKMqlksaqsELEQTRNTLKS 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1124 L-GQSNAALREHNSILETALAKR-EADLVQLNLQvqaVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAA--AK 1199
Cdd:pfam15921 718 MeGSDGHAMKVAMGMQKQITAKRgQIDALQSKIQ---FLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGelEV 794
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 30089940 1200 VEAGHNRRHFKAASLELSEVKKELQAKE--HLVQKLQAEADDLQIregKHSQEIAQFQA 1256
Cdd:pfam15921 795 LRSQERRLKEKVANMEVALDKASLQFAEcqDIIQRQEQESVRLKL---QHTLDVKELQG 850
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
853-1030 |
7.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 853 EAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEM 932
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 933 ETHLQSL-----------QFDKEQMV----AVTEANEALKKQIEELQQEA------RKAITEQKQKMRRLGSDLTSAQKE 991
Cdd:COG4942 110 LRALYRLgrqpplalllsPEDFLDAVrrlqYLKYLAPARREQAEELRADLaelaalRAELEAERAELEALLAELEEERAA 189
|
170 180 190
....*....|....*....|....*....|....*....
gi 30089940 992 MKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 1030
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
675-1118 |
8.29e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 46.98 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 675 EEFEGERERLQRMADSAA---SLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQ 751
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEdlrSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 752 ARLGELQGEAASredticllqnekiiLEAALQAAKSGKEELdrgarrleegteetsetleklREELAIKSGQVEHLQQET 831
Cdd:pfam19220 83 GELEELVARLAK--------------LEAALREAEAAKEEL---------------------RIELRDKTAQAEALERQL 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 832 AALKKQMQKIKEQflqqkvmVEAYRRDATSKDQLISelkatrkRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQV 911
Cdd:pfam19220 128 AAETEQNRALEEE-------NKALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAAELAEL 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 912 RQHMADLEGHLQSAQKERDEMETHLqslqfdkeqmVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK- 990
Cdd:pfam19220 194 TRRLAELETQLDATRARLRALEGQL----------AAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQl 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 991 --EMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQggssdsslalHERIQALEAELQAVSHSKTLLEKELQEV 1068
Cdd:pfam19220 264 laEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEAD----------LERRTQQFQEMQRARAELEERAEMLTKA 333
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 30089940 1069 IALTSQELEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLALELEHEK 1118
Cdd:pfam19220 334 LAAKDAALERAEERIASLSDRIAElTKRFEVERAALEQANRRLKEELQRER 384
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
740-902 |
9.14e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 9.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 740 LDALQTHYDELQARLGELQGEAASredticlLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREEL-- 817
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAE-------LEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 818 AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT----RKRLDSELKELRQELMQVHGE 893
Cdd:COG1579 85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEleekKAELDEELAELEAELEELEAE 164
|
....*....
gi 30089940 894 KRTAEAELS 902
Cdd:COG1579 165 REELAAKIP 173
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
897-1133 |
9.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 897 AEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQKQ 976
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 977 kmrrlgsdltsAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQL-RAQGGSSDSSLALHERIQALEAELQAVS 1055
Cdd:COG4942 95 -----------LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 1056 HSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALRE 1133
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
621-844 |
9.63e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 9.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 621 SQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGE----RERLQRMADSAASLEQ 696
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-LARRIRALEQElaalEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 697 QLEQVKLTLlqrDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKI 776
Cdd:COG4942 98 ELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 777 ILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQ 844
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
619-904 |
9.74e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.94 E-value: 9.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 619 SLSQQLTETQHRSMKEKG---RIAAQLQgiEADMLDQEAAFMQIQEAktmveEDLQRRLEEFEGERERlqrmadsaasle 695
Cdd:pfam05667 230 GLASRLTPEEYRKRKRTKllkRIAEQLR--SAALAGTEATSGASRSA-----QDLAELLSSFSGSSTT------------ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 696 qQLEQVKLTLLQRDQQLeALQQEHLDLMKQLTLT----QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIclL 771
Cdd:pfam05667 291 -DTGLTKGSRFTHTEKL-QFTNEAPAATSSPPTKveteEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSI--K 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 772 QnekiiLEAALQAAKSGKEELdrgarrleegtEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKV- 850
Cdd:pfam05667 367 Q-----VEEELEELKEQNEEL-----------EKQYKVKKKTLDLLPDAEENIAKLQALVDASAQRLVELAGQWEKHRVp 430
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 30089940 851 MVEAYRRDATSKDQliSELKATRKRldSELKELRQELMQVHGEKRTAEAELSRL 904
Cdd:pfam05667 431 LIEEYRALKEAKSN--KEDESQRKL--EEIKELREKIKEVAEEAKQKEELYKQL 480
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1043-1260 |
1.19e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1043 RIQALEAELQAVSHSKTLLE-------KELQEVIALTSQELEESREKVlelEDELQESRGFRKKIKRLEESNKKLALELE 1115
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQqqiktynKNIEEQRKKNGENIARKQNKY---DELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1116 HEKGKLTGLGQSNAALREhnsilETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHL---VQALQASLEKEKEKVNSLK 1192
Cdd:PHA02562 252 DPSAALNKLNTAAAKIKS-----KIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIkdkLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 1193 EQVaaakVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAE 1260
Cdd:PHA02562 327 EIM----DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
824-1448 |
1.30e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 824 VEHLQQETAAlKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLiSELKATRKRLDSELKELRQELmqvhgekrtAEAELSR 903
Cdd:COG4913 231 VEHFDDLERA-HEALEDAREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLEL---------LEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 904 LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEqmvavteanEALKKQIEELQQEARK---AITEQKQKMRR 980
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL---------EQLEREIERLERELEErerRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 981 LGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRaqggssdsslalhERIQALEAELQAVSHSKTL 1060
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR-------------RELRELEAEIASLERRKSN 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1061 LEKELQEVIALTSQELEESREKVL---ELEDELQESRGFRKKIKRL----------EESNKKLALEL---EHEKGKLTGL 1124
Cdd:COG4913 438 IPARLLALRDALAEALGLDEAELPfvgELIEVRPEEERWRGAIERVlggfaltllvPPEHYAAALRWvnrLHLRGRLVYE 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1125 GqsnAALREHNSILETALAKREADLVQLNLQ-----VQAVLQRKE-----EEDRQMKHLVQALQASLekekekvnslkeQ 1194
Cdd:COG4913 518 R---VRTGLPDPERPRLDPDSLAGKLDFKPHpfrawLEAELGRRFdyvcvDSPEELRRHPRAITRAG------------Q 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1195 VAAAKVEAGHNRRHFKAASLEL-SEVKKELQAKEHLVQKLQAEADDLQiregkhsQEIAQFQAELAEARAQLQLLqkqld 1273
Cdd:COG4913 583 VKGNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEELAEAE-------ERLEALEAELDALQERREAL----- 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1274 eqlskqpvgnQEMENLKWE---VDQKEREIQSLKQQLDLTEQqGRKELEGLQQllqnvksELEMAQEDLSMTQKDKFMLQ 1350
Cdd:COG4913 651 ----------QRLAEYSWDeidVASAEREIAELEAELERLDA-SSDDLAALEE-------QLEELEAELEELEEELDELK 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1351 AKVSELKNNMKtllqqnqqlKLDLRRGAAKTRKEPKGEASSSNPATpikipdcpvpasLLEELLR--PPPAVSKEPLKNL 1428
Cdd:COG4913 713 GEIGRLEKELE---------QAEEELDELQDRLEAAEDLARLELRA------------LLEERFAaaLGDAVERELRENL 771
|
650 660
....*....|....*....|
gi 30089940 1429 NSCLQQLKQEMDSLQRQMEE 1448
Cdd:COG4913 772 EERIDALRARLNRAEEELER 791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
947-1199 |
1.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 947 VAVTEANEALKKQIEELQQEarkaITEQKQKMRRLGSDLTSAQKEMktkhKAYENAVGILSRRLQEALAAKEAADAELGQ 1026
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQL----AALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1027 LRAQggssdsslalherIQALEAELQAvshsktlLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEES 1106
Cdd:COG4942 88 LEKE-------------IAELRAELEA-------QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1107 NKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKE 1186
Cdd:COG4942 148 RREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250
....*....|...
gi 30089940 1187 KVNSLKEQVAAAK 1199
Cdd:COG4942 228 LIARLEAEAAAAA 240
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
824-1208 |
2.10e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 824 VEHLQQETAALKKQMQKIKEqflqqkvmvEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSR 903
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKK---------EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 904 LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGS 983
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 984 DLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQggssdsSLALHERIQALEAELQavsHSKTLLEK 1063
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK------REAEEEEEEELEKLQE---KLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1064 ELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALA 1143
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30089940 1144 KREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRH 1208
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
695-975 |
2.17e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 695 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNE 774
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 775 KIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEA 854
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 855 YRRDATSKDQLISELKATRKRLDSELKELRQElmqvhGEKRTAEAELSRLHREvaqvrqhmadlEGHLQSAQKERDEMET 934
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNKDDFELKKENLE-----KEIDEKNKEIEELKQT-----------QKSLKKKQEEKQELID 592
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 30089940 935 HLQSLQFD-KEQMVAVTEANEALKKQIEELQQEARKAITEQK 975
Cdd:TIGR04523 593 QKEKEKKDlIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
893-1117 |
2.31e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 893 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkEQMVAVTEAN-EALKKQIEELQQEARKAI 971
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL----ARRIRALEQElAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 972 TEQKQKMRRLGSDLTSAQKEMKTKHKAY---ENAVGILSRRLQEALAAKEAADAELGQLRAQggssdsslalHERIQALE 1048
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD----------LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30089940 1049 AELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHE 1117
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
828-1362 |
2.35e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 828 QQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQ----VHGEKRTAEAELSR 903
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCmpdtYHERKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 904 LHREVAQVRQHMADLEgHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEAR-----KAITEQKQKM 978
Cdd:TIGR00618 231 LREALQQTQQSHAYLT-QKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahiKAVTQIEQQA 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 979 RRLGSDLTSaQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSK 1058
Cdd:TIGR00618 310 QRIHTELQS-KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1059 TLLEKELQeviaLTSQELEESREKVLELEDELQESRGFRKKIKRLEE----SNKKLALELEHEKGKLTGLGQSNAALREH 1134
Cdd:TIGR00618 389 TTLTQKLQ----SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKqqelQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1135 NSILEtALAKREADLVQLNLQVQ-------AVLQRKEEEDRQMK----HLVQALQAS-------------------LEKE 1184
Cdd:TIGR00618 465 AQSLK-EREQQLQTKEQIHLQETrkkavvlARLLELQEEPCPLCgsciHPNPARQDIdnpgpltrrmqrgeqtyaqLETS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1185 KEKV----NSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADD----------------LQIRE 1244
Cdd:TIGR00618 544 EEDVyhqlTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKlseaedmlaceqhallRKLQP 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1245 GKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPV-----GNQEMENLKWEVDQ-KEREIQSLKQQLDlteqqgrKEL 1318
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVrehalSIRVLPKELLASRQlALQKMQSEKEQLT-------YWK 696
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 30089940 1319 EGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKT 1362
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1174-1395 |
2.46e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1174 VQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQ 1253
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1254 FQAELAEARAQLQLLQKQLDEQLSKQPVG---NQE--------MENLKWEVDQKEREIQSLKQQLDLTEQQgRKELEGLQ 1322
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAAL-RAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30089940 1323 QLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPA 1395
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
654-1043 |
2.78e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 654 AAFMQIQ-EAKTMVEEDLQRRLEEFEG------ERERLQRMADSAASLEQqleqvkltllqRDQQLEALQQ---EHLDLM 723
Cdd:COG3096 271 ADYMRHAnERRELSERALELRRELFGArrqlaeEQYRLVEMARELEELSA-----------RESDLEQDYQaasDHLNLV 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 724 KQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGA------- 796
Cdd:COG3096 340 QTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAiqyqqav 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 797 ---RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQM---QKIKEQF-----LQQKVMVEAYRRDATSK-DQ 864
Cdd:COG3096 420 qalEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLsvaDAARRQFekayeLVCKIAGEVERSQAWQTaRE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 865 LISE------LKATRKRLDSELKELRQELMQvhgeKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS 938
Cdd:COG3096 500 LLRRyrsqqaLAQRLQQLRAQLAELEQRLRQ----QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 939 LQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQkQKMRRL----GSDLTSAQKEMKTKHKAYENAVGILSRRLQEAL 1014
Cdd:COG3096 576 AV---EQRSELRQQLEQLRARIKELAARAPAWLAAQ-DALERLreqsGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
410 420 430
....*....|....*....|....*....|
gi 30089940 1015 AAKEAADAELgQLRAQGGSSDSSL-ALHER 1043
Cdd:COG3096 652 RKQALESQIE-RLSQPGGAEDPRLlALAER 680
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
873-1323 |
2.81e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 873 RKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAqkerdemETHLQSLQfdkeQMVAVTEA 952
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA-------SDHLNLVQ----TALRQQEK 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 953 NEALKKQIEEL------QQEARKAITEQKQkMRRLGSDLTSAQ-KEMKTKHKAYENAVGILSRRlqealaakeaadaelg 1025
Cdd:COG3096 349 IERYQEDLEELterleeQEEVVEEAAEQLA-EAEARLEAAEEEvDSLKSQLADYQQALDVQQTR---------------- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1026 qlraqggssdsSLALHERIQALEaELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEE 1105
Cdd:COG3096 412 -----------AIQYQQAVQALE-KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1106 SNKKLALELEHEkgklTGLGQSNAALREHNSilETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQAS----- 1180
Cdd:COG3096 480 LVCKIAGEVERS----QAWQTARELLRRYRS--QQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQldaae 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1181 -LEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREG---KHSQEIAQFQA 1256
Cdd:COG3096 554 eLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGealADSQEVTAAMQ 633
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30089940 1257 ELAEaraqlqllqkqldeqlskqpvgnqemenlkwevdqKEREIQSLKQQLDLTEQQGRKELEGLQQ 1323
Cdd:COG3096 634 QLLE-----------------------------------REREATVERDELAARKQALESQIERLSQ 665
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1040-1322 |
3.28e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1040 LHERIQALEAELQAvshsktllEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKG 1119
Cdd:PRK03918 174 IKRRIERLEKFIKR--------TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1120 KLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAV--LQRKEEEDRQMKHLVQALQ---ASLEKEKEKVNSLKEQ 1194
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkeLKEKAEEYIKLSEFYEEYLdelREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1195 VAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQaEADDLQIREGKHSQEIAQFQAELAEARAqlqllqkqlde 1274
Cdd:PRK03918 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKEL----------- 393
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 30089940 1275 qlskqpvgnQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQ 1322
Cdd:PRK03918 394 ---------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
668-1005 |
4.03e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 668 EDLQRRLEEFEGERERLQRMADSAASL-------------EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ 734
Cdd:PRK04863 796 EELAERYATLSFDVQKLQRLHQAFSRFigshlavafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 735 SREQSLDALQTHYDE-LQARLGELQGEaasredticllqnekiiLEAALQAAKSgkeeldrgARRLEEGTEETSETLEKL 813
Cdd:PRK04863 876 ALNRLLPRLNLLADEtLADRVEEIREQ-----------------LDEAEEAKRF--------VQQHGNALAQLEPIVSVL 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 814 REELAiksgQVEHLQQETAALKKQMQKIKEQFLQQKVMVEayRRDATSKDQLISELKAtrkrlDSELKE-LRQELMQVHG 892
Cdd:PRK04863 931 QSDPE----QFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--RRAHFSYEDAAEMLAK-----NSDLNEkLRQRLEQAEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 893 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFdkeqmVAVTEANEALKKQIEELQQEAR---- 968
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV-----PADSGAEERARARRDELHARLSanrs 1074
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 30089940 969 ------KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 1005
Cdd:PRK04863 1075 rrnqleKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
873-1245 |
4.27e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 873 RKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQslQFDKEQM--VAVT 950
Cdd:PRK04863 281 RRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALR--QQEKIERyqADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 951 EANEALkkqieELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR-LQEALAAKEAAdaelgqlRA 1029
Cdd:PRK04863 359 ELEERL-----EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRaIQYQQAVQALE-------RA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1030 QGGSSDSSLALH---ERIQALEAELQAVSHSKTLLEKELQEVIALTSQeLEESREKVLELEDELQESRG---FRKKIKRL 1103
Cdd:PRK04863 427 KQLCGLPDLTADnaeDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ-FEQAYQLVRKIAGEVSRSEAwdvARELLRRL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1104 EESnKKLALELEHEKGKLTGLGQS-------NAALREHN----------SILETALAKREADLVQLNLQVQAVLQRKEEE 1166
Cdd:PRK04863 506 REQ-RHLAEQLQQLRMRLSELEQRlrqqqraERLLAEFCkrlgknlddeDELEQLQEELEARLESLSESVSEARERRMAL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1167 DRQMKHLvQALQASLEKE-------KEKVNSLKEQVAAAkVEAGHNRRHFKAASLE----LSEVKKELQAKEhlvQKLQA 1235
Cdd:PRK04863 585 RQQLEQL-QARIQRLAARapawlaaQDALARLREQSGEE-FEDSQDVTEYMQQLLErereLTVERDELAARK---QALDE 659
|
410
....*....|
gi 30089940 1236 EADDLQIREG 1245
Cdd:PRK04863 660 EIERLSQPGG 669
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
861-1356 |
4.51e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 861 SKDQLISELKATRKRLDSELKELRQELmqvhGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEtHLQSLQ 940
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEEL----KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 941 FDKEQMVAVTEANEALKKQIEELQQEaRKAITEQKQKMRRLGSDLTSAQKEMKTKHKayenavgilsrrlqealaakeaa 1020
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEER-LEELRELEEELEELEAELAELQEELEELLE----------------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1021 daelgqlraqggssDSSLALHERIQALEAELQAVSHSKTLLEKELQEVialtSQELEESREKVLELEDELQESRgFRKKI 1100
Cdd:COG4717 185 --------------QLSLATEEELQDLAEELEELQQRLAELEEELEEA----QEELEELEEELEQLENELEAAA-LEERL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1101 KRLEESNKKLALELEhekgkLTGLGQSNAALREHN-----------SILETALAKREADLVQLNLQVQAVLQRKEEEDRQ 1169
Cdd:COG4717 246 KEARLLLLIAAALLA-----LLGLGGSLLSLILTIagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1170 MKHLVQALQASLEKEKEKVNSLKEQVAAAKveaghnrrhfkAASLELSEVKKELQakehlVQKLQAEADDLQIREGKHSQ 1249
Cdd:COG4717 321 LEELLAALGLPPDLSPEELLELLDRIEELQ-----------ELLREAEELEEELQ-----LEELEQEIAALLAEAGVEDE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1250 EIAQFQAELAEARAQLQLLQKQLDEQLSKQPvGNQEMENLKWEVDQKEREIQSLKQQLDLTEqqgrKELEGLQQLLQNVK 1329
Cdd:COG4717 385 EELRAALEQAEEYQELKEELEELEEQLEELL-GELEELLEALDEEELEEELEELEEELEELE----EELEELREELAELE 459
|
490 500
....*....|....*....|....*....
gi 30089940 1330 SELEMAQED--LSMTQKDKFMLQAKVSEL 1356
Cdd:COG4717 460 AELEQLEEDgeLAELLQELEELKAELREL 488
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
367-638 |
5.16e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 367 AAAAEHQDQGQEvnGEVRSRRDSICSSVSLESSAAETQ---EEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLA 443
Cdd:PRK11281 27 ARAASNGDLPTE--ADVQAQLDALNKQKLLEAEDKLVQqdlEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 444 ALSTKLQAQVecshssQQRQDSLSseVDTLKQSCWDLERAMTDLQNMLEAKNASLASsnndLQVAEEQYQRLMAkvEDMQ 523
Cdd:PRK11281 105 ALKDDNDEET------RETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVS----LQTQPERAQAALY--ANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 524 RSM----------LSKDNTVHDLRQQMTALQSQLQQVQLERTTLTsklkasqAEISSLQSVrqwYQQQLALAQEARVRLQ 593
Cdd:PRK11281 171 RLQqirnllkggkVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL-------EGNTQLQDL---LQKQRDYLTARIQRLE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 30089940 594 GEMAHIQvgqmtqagllEHLKLENVSLSQQlTETQHRSMKEKGRI 638
Cdd:PRK11281 241 HQLQLLQ----------EAINSKRLTLSEK-TVQEAQSQDEAARI 274
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
582-798 |
5.51e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 582 LALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQhrsmKEKGRIAAQLQGIEADMLDQEAAFMQIQE 661
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE----RRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 662 AKTMVEEDLQRRLEEFEGERERLQRM-----------ADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlMKQLTLTQ 730
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 731 EALQSREQSLDALQthyDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARR 798
Cdd:COG4942 167 AELEAERAELEALL---AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
823-981 |
7.64e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 823 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ-------ELMQVHGEKr 895
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkyeeQLGNVRNNK- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 896 taeaELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavtEANEALKKQIEELQQEARKAITEQK 975
Cdd:COG1579 90 ----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELE----------AELAELEAELEEKKAELDEELAELE 155
|
....*.
gi 30089940 976 QKMRRL 981
Cdd:COG1579 156 AELEEL 161
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
835-1008 |
8.34e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 835 KKQMQKIKEQFLQQK----VMVEAY-------RRDATSKD--QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAEL 901
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKkdvtELLNKYsalaiknKFAKTKKDseIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDA 1585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 902 S---RLHREVAQVRQHMADLEGHL----------QSAQKERDEMETHLQSLQFDKE--QMVAVTEANEALKKQIEELQQE 966
Cdd:TIGR01612 1586 AkndKSNKAAIDIQLSLENFENKFlkisdikkkiNDCLKETESIEKKISSFSIDSQdtELKENGDNLNSLQEFLESLKDQ 1665
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 30089940 967 aRKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnaVGILSR 1008
Cdd:TIGR01612 1666 -KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--IGIIEK 1704
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
394-1261 |
9.07e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 394 VSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTL 473
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 474 KqscwdleramTDLQNMLEAKNAslassNNDLQVAEEQYQRLMAKVedMQRSMLSKDNTVHDLRQQMTALQSqlqqvqle 553
Cdd:pfam01576 305 K----------TELEDTLDTTAA-----QQELRSKREQEVTELKKA--LEEETRSHEAQLQEMRQKHTQALE-------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 554 rtTLTSKLKASQAEISSLQSVRQwyqqqlALAQEaRVRLQGEMAhiqvgqmtqagllehlklenvSLSQQLTETQHRsmk 633
Cdd:pfam01576 360 --ELTEQLEQAKRNKANLEKAKQ------ALESE-NAELQAELR---------------------TLQQAKQDSEHK--- 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 634 eKGRIAAQLQGIEADMLDQEAAFMQIQE--AKTMVE-EDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQ 710
Cdd:pfam01576 407 -RKKLEGQLQELQARLSESERQRAELAEklSKLQSElESVSSLLNEAEGKNIKLSK---DVSSLESQLQDTQELLQEETR 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 711 Q-------LEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQ 783
Cdd:pfam01576 483 QklnlstrLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 784 AAKSGKEELDRGARRleegteetsetlekLREELAIKSGQVEHLQQETAALKKQMQK----------IKEQFLQQKVMVE 853
Cdd:pfam01576 563 EKAAAYDKLEKTKNR--------------LQQELDDLLVDLDHQRQLVSNLEKKQKKfdqmlaeekaISARYAEERDRAE 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 854 AYRRD----ATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA-----EAELSR--LHREVAQVRQHMADLEGHL 922
Cdd:pfam01576 629 AEAREketrALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVgknvhELERSKraLEQQVEEMKTQLEELEDEL 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 923 QSAQKERDEMETHLQSL--QFDKEqMVAVTEANE----ALKKQIEELQ---QEARKAITEQKQKMRRLGSDLTSAQKEMK 993
Cdd:pfam01576 709 QATEDAKLRLEVNMQALkaQFERD-LQARDEQGEekrrQLVKQVRELEaelEDERKQRAQAVAAKKKLELDLKELEAQID 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 994 TKHKAYENAVGILsRRLQEALAAKEAADAELGQLRAQGGSsdSSLALHERIQALEAELQavshsktllekELQEVIALTS 1073
Cdd:pfam01576 788 AANKGREEAVKQL-KKLQAQMKDLQRELEEARASRDEILA--QSKESEKKLKNLEAELL-----------QLQEDLAASE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1074 QELEESREKVLELEDEL-----------QESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETAL 1142
Cdd:pfam01576 854 RARRQAQQERDELADEIasgasgksalqDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTS 933
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1143 AKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKekeKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKE 1222
Cdd:pfam01576 934 QKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEA---KIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQ 1010
|
890 900 910 920
....*....|....*....|....*....|....*....|.
gi 30089940 1223 LQAKEHLVQ--KLQAEADDLQIREGKHSQEIAQFQAELAEA 1261
Cdd:pfam01576 1011 VEDERRHADqyKDQAEKGNSRMKQLKRQLEEAEEEASRANA 1051
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
393-524 |
1.04e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.03 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 393 SVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAlstklQAQVecSHSSQQRQDSLSSEVDT 472
Cdd:PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS-----EKQV--SARALAQVELLNQQIAA 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 30089940 473 LKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAeeqyqrLMAKVEDMQR 524
Cdd:PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA------LAQRVQELNR 194
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
423-990 |
1.16e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 43.59 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 423 ALSLEASQALKEKAELQA----QLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKqscwdleRAMTDLQNMLEAKNASL 498
Cdd:pfam07111 52 SLELEGSQALSQQAELISrqlqELRRLEEEVRLLRETSLQQKMRLEAQAMELDALA-------VAEKAGQAEAEGLRAAL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 499 ASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDlrqqmtalqsqlqqvqLERTTLTSKLKASQAEISSLQSVRQWY 578
Cdd:pfam07111 125 AGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHE----------------EALSSLTSKAEGLEKSLNSLETKRAGE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 579 QQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlenVSLSQQLTETQHRSM--KEKGRIAAQLQGIEADMLDqeaaf 656
Cdd:pfam07111 189 AKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLR---KYVGEQVPPEVHSQTweLERQELLDTMQHLQEDRAD----- 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 657 mqIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQ--------QLEALQQEHLDLMKQltl 728
Cdd:pfam07111 261 --LQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWRekvfalmvQLKAQDLEHRDSVKQ--- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 729 tqealqsreqsldalqthydelqarlgeLQGEAASREDTICLLQNEKIILEAALQaAKSGKEELDRgarrleegteetse 808
Cdd:pfam07111 336 ----------------------------LRGQVAELQEQVTSQSQEQAILQRALQ-DKAAEVEVER-------------- 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 809 tleklreeLAIKSGQVEhLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELM 888
Cdd:pfam07111 373 --------MSAKGLQME-LSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVR 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 889 QVHGEKRTAEAELSrlhreVAQVRQHM-----------ADLEGHLQSAQKERDEMETHLQ-SLQFDKEQMVAVTEANEAL 956
Cdd:pfam07111 444 KVHTIKGLMARKVA-----LAQLRQEScpppppappvdADLSLELEQLREERNRLDAELQlSAHLIQQEVGRAREQGEAE 518
|
570 580 590
....*....|....*....|....*....|....
gi 30089940 957 KKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK 990
Cdd:pfam07111 519 RQQLSEVAQQLEQELQRAQESLASVGQQLEVARQ 552
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
487-764 |
1.31e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 487 LQNMLEAKNASLASSNNDLqvaEEQYQRLMAKVEDmqrsmlsKDNTVHDLRQQ--MTALQSQLQQVQLERTTLTSKLKAS 564
Cdd:COG3206 162 LEQNLELRREEARKALEFL---EEQLPELRKELEE-------AEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 565 QAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiQVGQMTQAGLLEhLKLENVSLSQQLTEtQHRSMKEkgriaaqlqg 644
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQS----PVIQQLRAQLAE-LEAELAELSARYTP-NHPDVIA---------- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 645 ieadmLDQeaafmQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlmk 724
Cdd:COG3206 296 -----LRA-----QIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE------ 359
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 30089940 725 qltltqealqsreqsLDALQTHYDELQARLGELQGEAASR 764
Cdd:COG3206 360 ---------------VEVARELYESLLQRLEEARLAEALT 384
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
673-1003 |
1.76e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 673 RLEEFEGERERL-QRMADSAAS------LEQQLEQVKLTLLQ------RDQQLEALQQEHLDLMKQLTLTQEALQSREQS 739
Cdd:COG3096 786 RLEELRAERDELaEQYAKASFDvqklqrLHQAFSQFVGGHLAvafapdPEAELAALRQRRSELERELAQHRAQEQQLRQQ 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 740 LDALQthydELQARLGELQGEAASREDTIclLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSEtlekLREELAi 819
Cdd:COG3096 866 LDQLK----EQLQLLNKLLPQANLLADET--LADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAV----LQSDPE- 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 820 ksgQVEHLQQETAALKKQMQKIKEQFLQQKVMVEayRRDATSKDQLISELKATrkrldSELKE-LRQELMQVHGEKRTAE 898
Cdd:COG3096 935 ---QFEQLQADYLQAKEQQRRLKQQIFALSEVVQ--RRPHFSYEDAVGLLGEN-----SDLNEkLRARLEQAEEARREAR 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 899 AELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkeQMVAVTEANEALKKQIEELQQEAR---------- 968
Cdd:COG3096 1005 EQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL-----GVQADAEAEERARIRRDELHEELSqnrsrrsqle 1079
|
330 340 350
....*....|....*....|....*....|....*
gi 30089940 969 KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 1003
Cdd:COG3096 1080 KQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAK 1114
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
878-1094 |
1.91e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.21 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 878 SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKE-----RDEMETHLQSLQFDKeQMVAVTEA 952
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDlvglrKDLDEATLARVDLEA-KIESLKEE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 953 NEALKKQIEELQQEARKAITEQKQKMRR---LGSDLTSAQKEMKTKHKAyenavgiLSRRLQEALAAKEAADAELGQLRA 1029
Cdd:pfam00038 133 LAFLKKNHEEEVRELQAQVSDTQVNVEMdaaRKLDLTSALAEIRAQYEE-------IAAKNREEAEEWYQSKLEELQQAA 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30089940 1030 QGGSSDSSLALHE------RIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESR 1094
Cdd:pfam00038 206 ARNGDALRSAKEEitelrrTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETR 276
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1189-1333 |
1.91e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1189 NSLKEQVAAAKVEAghnRRHFKAASLELSEVKKE--LQAKEHlVQKLQAEAD-DLQIREgkhsQEIAQFQAELAEARAQL 1265
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEAIKKEalLEAKEE-IHKLRNEFEkELRERR----NELQKLEKRLLQKEENL 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30089940 1266 QLLQKQLDEQlskqpvgNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELE---GL------QQLLQNVKSELE 1333
Cdd:PRK12704 99 DRKLELLEKR-------EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLtaeeakEILLEKVEEEAR 168
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
875-1011 |
2.30e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 875 RLDSELKELRQELmqvhgekRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQF----DKEQMVAVT 950
Cdd:COG1579 14 ELDSELDRLEHRL-------KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkYEEQLGNVR 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30089940 951 ------------EANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQ 1011
Cdd:COG1579 87 nnkeyealqkeiESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1212-1343 |
2.50e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.96 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1212 ASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKhSQEIAQFQAEL--AEARAQLQLLQKQLDEQLSKQPVGNQ-EMEN 1288
Cdd:COG1566 74 ARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGA-EAEIAAAEAQLaaAQAQLDLAQRELERYQALYKKGAVSQqELDE 152
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 30089940 1289 LKWEVDQKEREIQSLKQQLDLTEQQ--GRKELEGLQQLLQNVKSELEMAQEDLSMTQ 1343
Cdd:COG1566 153 ARAALDAAQAQLEAAQAQLAQAQAGlrEEEELAAAQAQVAQAEAALAQAELNLARTT 209
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1161-1361 |
2.53e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1161 QRKEEEDRQMKHLVQAL---QASLEKEKEKVNSLKEQVAAAKveaghnrrHFKAASLELSEVKKELQAKEhlVQKLQAEA 1237
Cdd:TIGR02168 172 ERRKETERKLERTRENLdrlEDILNELERQLKSLERQAEKAE--------RYKELKAELRELELALLVLR--LEELREEL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1238 DDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLdlteQQGRKE 1317
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----ANLERQ 317
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 30089940 1318 LEGLQQLLQNVKSELEMAQEDLSMtqkdkfmLQAKVSELKNNMK 1361
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAE-------LEEKLEELKEELE 354
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
827-1356 |
2.55e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 827 LQQETAALKKQMqKIKEQFLQQKVMVEAYRRDATSKDQLIS-------ELKATRKRLDSELKELRQELMQVHGEKRTAEA 899
Cdd:pfam05483 204 VQAENARLEMHF-KLKEDHEKIQHLEEEYKKEINDKEKQVSllliqitEKENKMKDLTFLLEESRDKANQLEEKTKLQDE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 900 ELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEthlQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMR 979
Cdd:pfam05483 283 NLKELIEKKDHLTKELEDIKMSLQRSMSTQKALE---EDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTC 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 980 RLGSDLTSAQKEMKTKhkayENAVGILSRRLQEALAakeaadaelgQLRAQGGSSDSSLALHERIQALEAELQAVSHSKT 1059
Cdd:pfam05483 360 SLEELLRTEQQRLEKN----EDQLKIITMELQKKSS----------ELEEMTKFKNNKEVELEELKKILAEDEKLLDEKK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1060 LLEKeLQEVIALTSQELE---ESREKvlELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNS 1136
Cdd:pfam05483 426 QFEK-IAEELKGKEQELIfllQAREK--EIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1137 iletALAKREADLV-QLNLQVQAVLQRKEEEDRQMKHL--VQALQASLEKEKEKV-NSLKEQVAAAKVEAGHNRRHFKAA 1212
Cdd:pfam05483 503 ----ELTQEASDMTlELKKHQEDIINCKKQEERMLKQIenLEEKEMNLRDELESVrEEFIQKGDEVKCKLDKSEENARSI 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1213 SLELSEVKKELQAKEHLVQKLQAEADDlqirEGKHSQEIAQFQAELAEaraqlqllqkqldeqlsKQPVGNQEMENLKWE 1292
Cdd:pfam05483 579 EYEVLKKEKQMKILENKCNNLKKQIEN----KNKNIEELHQENKALKK-----------------KGSAENKQLNAYEIK 637
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30089940 1293 VDQKEREIQSLKQQLDLTEQQGRKELE----GLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSEL 1356
Cdd:pfam05483 638 VNKLELELASAKQKFEEIIDNYQKEIEdkkiSEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEM 705
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1073-1333 |
3.15e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.87 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1073 SQELEESREKVLELEDELQES--RGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILE-TALAKREADL 1149
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEklGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEqLAAAEAEQEL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1150 VQLNLQVQAVLQRKEEEDRQmkhLVQALQASLEKEKEKVNSLKEQVAAAKVEAghnrrHFKAASLELSEVKKEL-QAKEH 1228
Cdd:COG5185 328 EESKRETETGIQNLTAEIEQ---GQESLTENLEAIKEEIENIVGEVELSKSSE-----ELDSFKDTIESTKESLdEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1229 LVQKLQAEADDLQIREGKHSQEIAQFQAELAEAR-----AQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSL 1303
Cdd:COG5185 400 QRGYAQEILATLEDTLKAADRQIEELQRQIEQATssneeVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSK 479
|
250 260 270
....*....|....*....|....*....|
gi 30089940 1304 KQQLDLTEQQGRKELEGLQQLLQNVKSELE 1333
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLE 509
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
417-515 |
3.30e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 40.30 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 417 LEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNA 496
Cdd:pfam08614 55 LEQLLAQLREELAELYRSRGELAQRLVDLNEELQELEKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQD 134
|
90
....*....|....*....
gi 30089940 497 SLASSNNDLQVAEEQYQRL 515
Cdd:pfam08614 135 ELVALQLQLNMAEEKLRKL 153
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
823-1011 |
4.81e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 823 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDatskdQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELS 902
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 903 RLHREVAQVRQHMADLEGH--LQSAQKERDEMETHLQSLQfdkeqmVAVTEAN---EALKKQIEELQQEARKAITEQKQK 977
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELS------ARYTPNHpdvIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190
....*....|....*....|....*....|....
gi 30089940 978 MRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQ 1011
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
813-965 |
5.16e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 813 LREELAIKSGQVEHLQQETAALKKQ--MQKIKEQFLQQKVMVEAYRRDATSKDQ-----LISELKATRKRLDSELKELRQ 885
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLlsLERQGNQDLQDSVANLRASLSAAEAERsrlqaLLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 886 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavTEANEALKKQIEELQQ 965
Cdd:PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG---------RRLNVALAQRVQELNR 194
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
813-1343 |
5.82e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 813 LREELAIKSGQVEHLQQETAALKKQMQKIKE------QFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQE 886
Cdd:pfam10174 183 RTRRIAEAEMQLGHLEVLLDQKEKENIHLREelhrrnQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTN 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 887 LMqVHGEKRTAEA---ELSRLH-----REVAQVRQHMADLEGHLQSAQKERDEM-------ETHLQSLQFD---KEQMVA 948
Cdd:pfam10174 263 GL-LHTEDREEEIkqmEVYKSHskfmkNKIDQLKQELSKKESELLALQTKLETLtnqnsdcKQHIEVLKESltaKEQRAA 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 949 VTEAN-EALKKQIEELQQEARKAiTEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAakeaadaelgQL 1027
Cdd:pfam10174 342 ILQTEvDALRLRLEEKESFLNKK-TKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQE----------QL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1028 RAQGGSSDSslaLHERIQALEAELQAVSHSKTLLEKELQE----VIALTSQELEESREKVLELEDelqesrgFRKKIKRL 1103
Cdd:pfam10174 411 RDKDKQLAG---LKERVKSLQTDSSNTDTALTTLEEALSEkeriIERLKEQREREDRERLEELES-------LKKENKDL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1104 EEsnkklalELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQavlQRKEEEDRQMKHLVQALQASLEK 1183
Cdd:pfam10174 481 KE-------KVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVE---QKKEECSKLENQLKKAHNAEEAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1184 EK-----EKVNSLKEQVAAAKVEAGHNRrhfkaASLE-LSEVKKELQAKEHLVQKLQAEADDLQIREGK-HSQEIAQFQA 1256
Cdd:pfam10174 551 RTnpeinDRIRLLEQEVARYKEESGKAQ-----AEVErLLGILREVENEKNDKDKKIAELESLTLRQMKeQNKKVANIKH 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1257 elaearaqlqllqkqldeqlskqpvGNQEMENLKWEVDQKEReiqslKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQ 1336
Cdd:pfam10174 626 -------------------------GQQEMKKKGAQLLEEAR-----RREDNLADNSQQLQLEELMGALEKTRQELDATK 675
|
....*..
gi 30089940 1337 EDLSMTQ 1343
Cdd:pfam10174 676 ARLSSTQ 682
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
648-758 |
5.93e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 5.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 648 DMLDQEAAFMQIqEAKTMVEE--DLQRRLEEFEGERERLQRMADS-----AASLEQQLEQVKltllqrdQQLEALQ---Q 717
Cdd:COG0542 393 DLIDEAAARVRM-EIDSKPEEldELERRLEQLEIEKEALKKEQDEasferLAELRDELAELE-------EELEALKarwE 464
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 30089940 718 EHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQ 758
Cdd:COG0542 465 AEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELA 505
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
396-1350 |
5.97e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 396 LESSAAETQEEMLQVLKEKMRLEGQLEAlsleASQALKEKAELQAQLAALSTKLQaqvECSHSSQQRQDSLSSEVDTLKQ 475
Cdd:pfam01576 24 AESELKELEKKHQQLCEEKNALQEQLQA----ETELCAEAEEMRARLAARKQELE---EILHELESRLEEEEERSQQLQN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 476 SCWDLERAMTDLQNMLEAKNASlassNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQM---TALQSQLQQVQL 552
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEEEAA----RQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLeerISEFTSNLAEEE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 553 ERTTLTSKLKASQ-AEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRS 631
Cdd:pfam01576 173 EKAKSLSKLKNKHeAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 632 MKEKGRIAAQLQGI---EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASL-------EQQLEQV 701
Cdd:pfam01576 253 EEETAQKNNALKKIrelEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQqelrskrEQEVTEL 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 702 KLTLLQR----DQQLEALQQEHL----DLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREdticllqN 773
Cdd:pfam01576 333 KKALEEEtrshEAQLQEMRQKHTqaleELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSE-------H 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 774 EKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmve 853
Cdd:pfam01576 406 KRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELL-------- 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 854 ayRRDATSKDQLISELKAtrkrLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEME 933
Cdd:pfam01576 478 --QEETRQKLNLSTRLRQ----LEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQ 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 934 THLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKmRRLGSDLTSAQKEMKtKHKAYENAVG--ILSRRLQ 1011
Cdd:pfam01576 552 RELEAL---TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ-RQLVSNLEKKQKKFD-QMLAEEKAISarYAEERDR 626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1012 EALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESREKVLELED 1088
Cdd:pfam01576 627 AEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKnvhELERSKRALEQQVEEMKTQLEELED 706
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1089 ELQESRGFRKkikRLEESNKKLALELEHEKGKLTGLG-----QSNAALREHNSILE----------TALAKREADLVQLN 1153
Cdd:pfam01576 707 ELQATEDAKL---RLEVNMQALKAQFERDLQARDEQGeekrrQLVKQVRELEAELEderkqraqavAAKKKLELDLKELE 783
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1154 LQVQAVLQRKEEEDRQMKHLvQALQASLEKEKEKVNSLKEQVAAAKVEaghNRRHFKAASLELSEVKKELQAKEHLVQKL 1233
Cdd:pfam01576 784 AQIDAANKGREEAVKQLKKL-QAQMKDLQRELEEARASRDEILAQSKE---SEKKLKNLEAELLQLQEDLAASERARRQA 859
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1234 QAEADDLQI------------------------------------------REGKHSQEIAQFQAELAEARAQLQLLQKQ 1271
Cdd:pfam01576 860 QQERDELADeiasgasgksalqdekrrleariaqleeeleeeqsntellndRLRKSTLQVEQLTTELAAERSTSQKSESA 939
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1272 LDEQLSKQP---VGNQEMEN-------------------LKWEVDQKEREIQSLKQQLDLTE-----------------Q 1312
Cdd:pfam01576 940 RQQLERQNKelkAKLQEMEGtvkskfkssiaaleakiaqLEEQLEQESRERQAANKLVRRTEkklkevllqvederrhaD 1019
|
1050 1060 1070
....*....|....*....|....*....|....*...
gi 30089940 1313 QGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQ 1350
Cdd:pfam01576 1020 QYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQ 1057
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
786-1323 |
6.79e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 786 KSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKK--QMQKIKEQFLQQKV------------- 850
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDArkaeearkaedak 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 851 MVEAYRRDATSKDQLISELKATRKRLDSELK--------ELRQ-------ELMQVHGEKRTAE----AELSRLHREVAQV 911
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEDAKKAEAARKaeevrkaeELRKaedarkaEAARKAEEERKAEearkAEDAKKAEAVKKA 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 912 RQHMADLEgHLQSAQKER--DEMETHLQSLQFDKEQMVAVTEANEALK----KQIEELQQ--EARKAitEQKQKMRRLGS 983
Cdd:PTZ00121 1233 EEAKKDAE-EAKKAEEERnnEEIRKFEEARMAHFARRQAAIKAEEARKadelKKAEEKKKadEAKKA--EEKKKADEAKK 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 984 DLTSAQKEMKTKHKAYE-NAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLE 1062
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1063 KELQEVIALTSQELEESREKVLELEDELQESRGFRKK---IKRLEESNKKL-----ALELE---HEKGKLTGLGQSNAAL 1131
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKaeeKKKADEAKKKAeeakkADEAKkkaEEAKKAEEAKKKAEEA 1469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1132 REHNSILETALAKREADlvQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKV-EAGHNRRHFK 1210
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKAD--EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAdEAKKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1211 AASLELSEVKKELQAKEHLVQKLQAEAD-DLQIREGKHSQEIaqfqaelAEARAQLQLLQKQLDEQLSKQPVGNQEMENL 1289
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDkNMALRKAEEAKKA-------EEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590
....*....|....*....|....*....|....
gi 30089940 1290 KWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQ 1323
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
391-511 |
7.46e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 391 CSSVSLESSAaeTQEEMLQVLKEKMRLEGQLEALSLEASQALKEK-AELQAQLAALSTKLQAQvecsHSSQQRQDSLSSE 469
Cdd:COG0542 399 AARVRMEIDS--KPEELDELERRLEQLEIEKEALKKEQDEASFERlAELRDELAELEEELEAL----KARWEAEKELIEE 472
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 30089940 470 VDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQ--VAEEQ 511
Cdd:COG0542 473 IQELKEELEQRYGKIPELEKELAELEEELAELAPLLReeVTEED 516
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
386-742 |
7.83e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 386 RRDSICSSVSLESSAaETQEEMLQVLKEKMRLEGQLE----------ALSLEASQALKEKAELQAQLAALSTKLQAQVEC 455
Cdd:PRK04863 292 RRELYTSRRQLAAEQ-YRLVEMARELAELNEAESDLEqdyqaasdhlNLVQTALRQQEKIERYQADLEELEERLEEQNEV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 456 SHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAknaslassnndLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHD 535
Cdd:PRK04863 371 VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDV-----------QQTRAIQYQQAVQALERAKQLCGLPDLTADN 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 536 LRQQMTALQSQLQQVQLERTTLTSKLKASQAEISslqsvrqwyqqQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKL 615
Cdd:PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS-----------QFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 616 ENV-----SLSQQLTETQHRSMKEKG--RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDL--------------QRRL 674
Cdd:PRK04863 509 RHLaeqlqQLRMRLSELEQRLRQQQRaeRLLAEFCKRLGKNLDDEDELEQLQEELEARLESLsesvsearerrmalRQQL 588
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30089940 675 EEFEGERERLQRMA----DSAASLEQQLEQVKLTLLQRdQQLEALQQEHLDLMKQLTLTQEALQSREQSLDA 742
Cdd:PRK04863 589 EQLQARIQRLAARApawlAAQDALARLREQSGEEFEDS-QDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
434-885 |
7.98e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 434 EKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDtlkqscwdlerAMTDLQNMLEAknaslassnnDLQVAEEQYQ 513
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRLVEMARELE-----------ELSARESDLEQ----------DYQAASDHLN 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 514 RLMAKV---EDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTsklkASQAEISSLQSVRQWYQQQLAlAQEARV 590
Cdd:COG3096 338 LVQTALrqqEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLE----AAEEEVDSLKSQLADYQQALD-VQQTRA 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 591 rlqgemahIQVGQMTQAgllehlkLENVSLSQQLTE-TQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEED 669
Cdd:COG3096 413 --------IQYQQAVQA-------LEKARALCGLPDlTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 670 LQrRLEEFEGERERLQRMADSAASLEQQLEQVKLTllqrdQQLEALQQEHLDLMKQLTLTQEALQSREQ----------S 739
Cdd:COG3096 478 YE-LVCKIAGEVERSQAWQTARELLRRYRSQQALA-----QRLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldA 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 740 LDALQTHYDELQARLGELQGEAASredticlLQNEKIILEAALQAAKSGKEELdrgaRRLEEGTEETSETLEKLREELAI 819
Cdd:COG3096 552 AEELEELLAELEAQLEELEEQAAE-------AVEQRSELRQQLEQLRARIKEL----AARAPAWLAAQDALERLREQSGE 620
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30089940 820 ksgQVEHLQQETAALKKQMQKIKEQflqqkvmveayrrdATSKDQLIselkATRKRLDSELKELRQ 885
Cdd:COG3096 621 ---ALADSQEVTAAMQQLLEREREA--------------TVERDELA----ARKQALESQIERLSQ 665
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
1060-1177 |
8.82e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 40.10 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1060 LLEKELQEVI---ALTS----QELEESREKVLELedelqesrgfRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALR 1132
Cdd:COG4026 107 LVRKEIKNAIiraGLKSlqniPEYNELREELLEL----------KEKIDEIAKEKEKLTKENEELESELEELREEYKKLR 176
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 30089940 1133 EHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQAL 1177
Cdd:COG4026 177 EENSILEEEFDNIKSEYSDLKSRFEELLKKRLLEVFSLEELWKEL 221
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-773 |
9.12e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 427 EASQALKEKAELQAQLAALSTKLqaqvecsHSSQQRQDSLSSEVDtlkqscwDLERAMTDLQNMLEAKNASLASSNNDLQ 506
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQL-------AAEQYRLVEMARELA-------ELNEAESDLEQDYQAASDHLNLVQTALR 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 507 vAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQ 586
Cdd:PRK04863 346 -QQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 587 EARVRLQ---------GEMAHIQVGQMTQAGlLEHLKLEN-VSLSQQLTETQHRSMKEKGRIAAQ--------------L 642
Cdd:PRK04863 425 RAKQLCGlpdltadnaEDWLEEFQAKEQEAT-EELLSLEQkLSVAQAAHSQFEQAYQLVRKIAGEvsrseawdvarellR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 643 QGIEADMLDQ--EAAFMQIQEAKTMVEE--DLQRRLEEFEGereRLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQE 718
Cdd:PRK04863 504 RLREQRHLAEqlQQLRMRLSELEQRLRQqqRAERLLAEFCK---RLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 30089940 719 HLDLMKQltltQEALQSREQSLDALQTHYDELQ---ARLGELQGEA-ASREDTICLLQN 773
Cdd:PRK04863 581 RMALRQQ----LEQLQARIQRLAARAPAWLAAQdalARLREQSGEEfEDSQDVTEYMQQ 635
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
866-1161 |
9.71e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 866 ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQ 945
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 946 MVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELG 1025
Cdd:COG4372 127 LEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30089940 1026 QLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEE 1105
Cdd:COG4372 207 KLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELE 286
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 30089940 1106 SNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQ 1161
Cdd:COG4372 287 ALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADL 342
|
|
| |
