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Conserved domains on  [gi|5174731|ref|NP_005990|]
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translin-associated protein X [Homo sapiens]

Protein Classification

translin family protein( domain architecture ID 10201823)

translin (also known as TB-RBP), and its binding partner protein TRAX (translin-associated factor-X) are a paralogous pair of conserved proteins; translin-TRAX complex enhances the removal of the passenger strand in RNAi and the formation of active RISC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Translin-like cd14805
Translin and translin-associated factor-X (TRAX); Translin (also known as TB-RBP), and its ...
 42-256 4.46e-99

Translin and translin-associated factor-X (TRAX); Translin (also known as TB-RBP), and its binding partner protein TRAX (translin-associated factor-X) are a paralogous pair of conserved proteins, and oligomeric complexes of TRAX and translin are known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). The Translin-Trax complex enhances the removal of the passenger strand in RNAi and the formation of active RISC. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA as well as DNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity.


:

Pssm-ID: 271348 [Multi-domain]  Cd Length: 197  Bit Score: 289.01  E-value: 4.46e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   42 FQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAP-DMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 120
Cdd:cd14805   1 YQGELDAEQDIRERIRKVVRDIEQESKEIIFLLQGIHSGKgDIEKRCLEAREHLNTVKQKLTSLATELPAEQYYRFHEHW 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  121 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLifttedngkenktpssdaQDKQFGTWRLRVTPVDYLLGVADLTGELMR 200
Cdd:cd14805  81 TFGLQRLVFAAAFVVYLETETLVTREEVTEIL------------------GIEPDREKGFHLDVEDYLLGVLDLASELSR 142

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 5174731  201 MCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGpYEVSKKLYTLKQSLAKVENA 256
Cdd:cd14805 143 LCINSVTAGDYDRPLHISTFINELYSGFRLLNLKN-DELRKRYDTLKYDVKKVEEV 197
 
Name Accession Description Interval E-value
Translin-like cd14805
Translin and translin-associated factor-X (TRAX); Translin (also known as TB-RBP), and its ...
 42-256 4.46e-99

Translin and translin-associated factor-X (TRAX); Translin (also known as TB-RBP), and its binding partner protein TRAX (translin-associated factor-X) are a paralogous pair of conserved proteins, and oligomeric complexes of TRAX and translin are known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). The Translin-Trax complex enhances the removal of the passenger strand in RNAi and the formation of active RISC. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA as well as DNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity.


Pssm-ID: 271348 [Multi-domain]  Cd Length: 197  Bit Score: 289.01  E-value: 4.46e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   42 FQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAP-DMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 120
Cdd:cd14805   1 YQGELDAEQDIRERIRKVVRDIEQESKEIIFLLQGIHSGKgDIEKRCLEAREHLNTVKQKLTSLATELPAEQYYRFHEHW 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  121 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLifttedngkenktpssdaQDKQFGTWRLRVTPVDYLLGVADLTGELMR 200
Cdd:cd14805  81 TFGLQRLVFAAAFVVYLETETLVTREEVTEIL------------------GIEPDREKGFHLDVEDYLLGVLDLASELSR 142

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 5174731  201 MCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGpYEVSKKLYTLKQSLAKVENA 256
Cdd:cd14805 143 LCINSVTAGDYDRPLHISTFINELYSGFRLLNLKN-DELRKRYDTLKYDVKKVEEV 197
Translin pfam01997
Translin family; Members of this family include Translin that interacts with DNA and forms a ...
 51-264 3.92e-79

Translin family; Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes Swiss:Q99598, that was found to interact with translin with yeast two-hybrid screen.


Pssm-ID: 460410 [Multi-domain]  Cd Length: 197  Bit Score: 238.18  E-value: 3.92e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731     51 DKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIK-LDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVE 129
Cdd:pfam01997   1 DRRERIIKISRDITALSKKIIFLLHRVHSTPSALNVLNPAKILaIKEAKERLAELAELLSKLNYYRYNRAWSPGLQEYIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731    130 AVSFQHFIKTRSLISMDEINKQLIFTTEDNgkenktpssdaqdkqfgTWRLRVTPVDYLLGVADLTGELMRMCINSVGNG 209
Cdd:pfam01997  81 ALTFAHYLETGTLLTLEEVQEILGVPVNLD-----------------RDGFHLTIEDYLLGLFDLTGELMRLAINSVTLG 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 5174731    210 DIDTPFEVSQFLRQVYDGFSFIGNTGPyEVSKKLYTLKQSLAKVENACYALKVRG 264
Cdd:pfam01997 144 DYERPLKISQFLRDLYAGFQLLNLKND-DLRKKLDVLKYSVKKVEDVVYDLSVRG 197
PRK14562 PRK14562
haloacid dehalogenase superfamily protein; Provisional
 45-226 1.31e-18

haloacid dehalogenase superfamily protein; Provisional


Pssm-ID: 184746  Cd Length: 204  Bit Score: 81.86  E-value: 1.31e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731    45 ELDARHDKYERLVKLSRDITVESKRTIFLLHRitsapdmEDiLTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGL 124
Cdd:PRK14562  12 ELEEKDEAREEALKLSREIVRLSGDAIRAIHR-------GD-FEEAEKLLKEAEELVKELKELLKDHPELYYAGYVGTAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   125 QEYVEAVSFQHFIKtrslismdeinkqlifttedngkENKTPSSdaqdkqfgtWRLRVTPVDYLLGVADLTGELMRMCIN 204
Cdd:PRK14562  84 QEYVEALLVYSLLF-----------------------ENKIPSP---------EELGVPEAAYLLGLADAIGELRRHILE 131

                        170       180
                 ....*....|....*....|..
gi 5174731   205 SVGNGDIDTPFEVSQFLRQVYD 226
Cdd:PRK14562 132 LLRKGEIEEAEKLLEIMEEIYE 153
COG2178 COG2178
Predicted RNA- or ssDNA-binding protein, translin family [General function prediction only];
44-212 2.38e-17

Predicted RNA- or ssDNA-binding protein, translin family [General function prediction only];


Pssm-ID: 441781  Cd Length: 205  Bit Score: 78.35  E-value: 2.38e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   44 QELDARHDKYERLVKLSRDITVESKRTIFLLHRitsapdmeDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTG 123
Cdd:COG2178  11 EELEEKDEAREEALKLSREIIRLSGNAIRAIHR--------GELEEAEELLDEARELVEELKELLKEYPDLYYSGYVQDA 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  124 LQEYVEAVSFQHFIKTRSLISMDEINkqlifttedngkenktpssdaqdkqfgtwrlrVTPVDYLLGVADLTGELMRMCI 203
Cdd:COG2178  83 LQEYVEASILYAIIRGEEIPSPEELG--------------------------------VPPAAYLLGLADAIGELRRHIL 130


                ....*....
gi 5174731  204 NSVGNGDID 212
Cdd:COG2178 131 DLLRKGDLE 139
 
Name Accession Description Interval E-value
Translin-like cd14805
Translin and translin-associated factor-X (TRAX); Translin (also known as TB-RBP), and its ...
 42-256 4.46e-99

Translin and translin-associated factor-X (TRAX); Translin (also known as TB-RBP), and its binding partner protein TRAX (translin-associated factor-X) are a paralogous pair of conserved proteins, and oligomeric complexes of TRAX and translin are known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). The Translin-Trax complex enhances the removal of the passenger strand in RNAi and the formation of active RISC. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA as well as DNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity.


Pssm-ID: 271348 [Multi-domain]  Cd Length: 197  Bit Score: 289.01  E-value: 4.46e-99
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   42 FQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAP-DMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 120
Cdd:cd14805   1 YQGELDAEQDIRERIRKVVRDIEQESKEIIFLLQGIHSGKgDIEKRCLEAREHLNTVKQKLTSLATELPAEQYYRFHEHW 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  121 TTGLQEYVEAVSFQHFIKTRSLISMDEINKQLifttedngkenktpssdaQDKQFGTWRLRVTPVDYLLGVADLTGELMR 200
Cdd:cd14805  81 TFGLQRLVFAAAFVVYLETETLVTREEVTEIL------------------GIEPDREKGFHLDVEDYLLGVLDLASELSR 142

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 5174731  201 MCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGpYEVSKKLYTLKQSLAKVENA 256
Cdd:cd14805 143 LCINSVTAGDYDRPLHISTFINELYSGFRLLNLKN-DELRKRYDTLKYDVKKVEEV 197
Translin pfam01997
Translin family; Members of this family include Translin that interacts with DNA and forms a ...
 51-264 3.92e-79

Translin family; Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes Swiss:Q99598, that was found to interact with translin with yeast two-hybrid screen.


Pssm-ID: 460410 [Multi-domain]  Cd Length: 197  Bit Score: 238.18  E-value: 3.92e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731     51 DKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIK-LDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVE 129
Cdd:pfam01997   1 DRRERIIKISRDITALSKKIIFLLHRVHSTPSALNVLNPAKILaIKEAKERLAELAELLSKLNYYRYNRAWSPGLQEYIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731    130 AVSFQHFIKTRSLISMDEINKQLIFTTEDNgkenktpssdaqdkqfgTWRLRVTPVDYLLGVADLTGELMRMCINSVGNG 209
Cdd:pfam01997  81 ALTFAHYLETGTLLTLEEVQEILGVPVNLD-----------------RDGFHLTIEDYLLGLFDLTGELMRLAINSVTLG 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 5174731    210 DIDTPFEVSQFLRQVYDGFSFIGNTGPyEVSKKLYTLKQSLAKVENACYALKVRG 264
Cdd:pfam01997 144 DYERPLKISQFLRDLYAGFQLLNLKND-DLRKKLDVLKYSVKKVEDVVYDLSVRG 197
TRAX cd14820
Translin-associated factor-X (TRAX); TRAX (translin-associated factor-X) is a paralog of its ...
 39-258 1.72e-77

Translin-associated factor-X (TRAX); TRAX (translin-associated factor-X) is a paralog of its binding partner protein Translin and together they form oligomeric complexes known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). TRAX complexed with Translin is possibly involved in dendritic RNA processing and in DNA double-strand break repair as an interacting partner with C1D, an activator of the DNA-dependent protein kinase involved in the repair of DNA-double strand breaks. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear.


Pssm-ID: 271350 [Multi-domain]  Cd Length: 182  Bit Score: 233.61  E-value: 1.72e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRItSAPDMEDILTESEIKLDGVRQKIFqvaqelsGEDMHQFHR 118
Cdd:cd14820   1 FESIRKELDEKDDKRERLIKLSRDITRLSKRAIFALHRG-DLEEAEELLKEARELLEELRELLK-------EEPDLLYSG 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  119 AITTGLQEYVEAVSFQHFIKTRSLISMDEinkqlifttedngkenktpssdaqdkqfgtwRLRVTPVDYLLGVADLTGEL 198
Cdd:cd14820  73 AVSPALQEYVEALSFYHFLKEGRLPTPDE-------------------------------ELGVTPEDYLLGLADLTGEL 121

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  199 MRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACY 258
Cdd:cd14820 122 MRYAIDSLRKGDLEEAEKYLEFMEEIYEGLMSFDYPDALELRKKLDVDRQSLLKEETRCY 181
Translin cd14819
Translin, also known as TB-RBP (testis brain RNA-binding protein); Translin (also known as ...
 42-229 6.67e-19

Translin, also known as TB-RBP (testis brain RNA-binding protein); Translin (also known as TB-RBP for Testis Brain RNA-binding protein, a mouse ortholog), is a paralog of its binding partner protein TRAX (translin-associated factor-X) and together they form oligomeric complexes known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). DNA damage has been proposed to stimulate transport of Translin into nuclei. It binds to RNA and single-stranded DNA, and its selectivity is modulated by interactions with GTP and TRAX. Translin may also regulate dendritic trafficking of BDNF RNAs as well as function as a key activator of siRNA-mediated silencing in drosophila. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear.


Pssm-ID: 271349  Cd Length: 206  Bit Score: 82.58  E-value: 6.67e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   42 FQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAP--DMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRA 119
Cdd:cd14819   1 LQEELEKEQELREEIREIVRELDQTLREIQAILQRIHSTPssQVPELCESARELIEEVKETLAELAELIPPHQYYKYNDL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  120 ITTGLQEYVEAVSFQHFIKTRSLISMDEINKqlIFTTEDNGKEnktpssdaqdkqfgtwRLRVTPVDYLLGVADLTGELM 199
Cdd:cd14819  81 WRRILQRAVFLIALRHFLETGRLLTLEEVAE--ILGVPVNLKD----------------GFHLDLEDYLHGLLSLVNELS 142

                       170       180       190
                ....*....|....*....|....*....|
gi 5174731  200 RMCINSVGNGDIDTPFEVSQFLRQVYDGFS 229
Cdd:cd14819 143 RLAVNSVTLGDYERPLKISAFVKDLHAGFQ 172
PRK14562 PRK14562
haloacid dehalogenase superfamily protein; Provisional
 45-226 1.31e-18

haloacid dehalogenase superfamily protein; Provisional


Pssm-ID: 184746  Cd Length: 204  Bit Score: 81.86  E-value: 1.31e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731    45 ELDARHDKYERLVKLSRDITVESKRTIFLLHRitsapdmEDiLTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGL 124
Cdd:PRK14562  12 ELEEKDEAREEALKLSREIVRLSGDAIRAIHR-------GD-FEEAEKLLKEAEELVKELKELLKDHPELYYAGYVGTAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   125 QEYVEAVSFQHFIKtrslismdeinkqlifttedngkENKTPSSdaqdkqfgtWRLRVTPVDYLLGVADLTGELMRMCIN 204
Cdd:PRK14562  84 QEYVEALLVYSLLF-----------------------ENKIPSP---------EELGVPEAAYLLGLADAIGELRRHILE 131

                        170       180
                 ....*....|....*....|..
gi 5174731   205 SVGNGDIDTPFEVSQFLRQVYD 226
Cdd:PRK14562 132 LLRKGEIEEAEKLLEIMEEIYE 153
COG2178 COG2178
Predicted RNA- or ssDNA-binding protein, translin family [General function prediction only];
44-212 2.38e-17

Predicted RNA- or ssDNA-binding protein, translin family [General function prediction only];


Pssm-ID: 441781  Cd Length: 205  Bit Score: 78.35  E-value: 2.38e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731   44 QELDARHDKYERLVKLSRDITVESKRTIFLLHRitsapdmeDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTG 123
Cdd:COG2178  11 EELEEKDEAREEALKLSREIIRLSGNAIRAIHR--------GELEEAEELLDEARELVEELKELLKEYPDLYYSGYVQDA 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174731  124 LQEYVEAVSFQHFIKTRSLISMDEINkqlifttedngkenktpssdaqdkqfgtwrlrVTPVDYLLGVADLTGELMRMCI 203
Cdd:COG2178  83 LQEYVEASILYAIIRGEEIPSPEELG--------------------------------VPPAAYLLGLADAIGELRRHIL 130


                ....*....
gi 5174731  204 NSVGNGDID 212
Cdd:COG2178 131 DLLRKGDLE 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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