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Concise Results
Standard Results
Full Results
progesterone-induced-blocking factor 1 isoform 2 [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
206-540
2.42e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.19
E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 206 NILAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQIRCQR L A L ELADTKQ -- L IQQGDYRQENYDKVKS E RDA LE Q E VI E 280
Cdd:COG1196 192 EDILG EL ERQLEP L E rqa EKA E R Y R E LKEELK E LEAELLL L K L RELEAEL ee L EAELEELEAELEELEA E LAE LE A E LE E 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 281 LR RKH E I LE ASHMIQTK E RS EL SK E VVT LEQ TVTL L QKDKEY L NRQNM EL SVRC A HE E DR LE R L QAQ LEE SKKAR EE mye 360
Cdd:COG1196 272 LR LEL E E LE LELEEAQA E EY EL LA E LAR LEQ DIAR L EERRRE L EERLE EL EEEL A EL E EE LE E L EEE LEE LEEEL EE --- 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 361 kyvasrdhykteyenk LHD ELE QIRLKTNQEIDQ L RN A SR E MY E R E NR nl R E ARDNAVA E KE RA VMAEKDA LE KHDQLLD 440
Cdd:COG1196 349 ---------------- AEE ELE EAEAELAEAEEA L LE A EA E LA E A E EE -- L E ELAEELL E AL RA AAELAAQ LE ELEEAEE 410
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 441 RYR E LQLST E SKVT E FLHQSKLKSF E S E RVQLLQ EE T A RNLTQCQL E C E KYQKK L EV L TK E FYS L Q A SSEKRIT EL QAQN 520
Cdd:COG1196 411 ALL E RLERL E EELE E LEEALAELEE E E E EEEEAL EE A A EEEAELEE E E E ALLEL L AE L LE E AAL L E A ALAELLE EL AEAA 490
330 340
....*....|....*....|
gi 55769583 521 SEHQAR L DIYEKL E KE L DEI 540
Cdd:COG1196 491 ARLLLL L EAEADY E GF L EGV 510
SMC_N super family
cl47134 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
32-355
8.48e-06
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
TIGR02169 :Pssm-ID: 481474 [Multi-domain]
Cd Length: 1164
Bit Score: 49.30
E-value: 8.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 32 D D I SSSE E REG K VRITRQLI E RK E L lh NI QL L KIELSQ K TMMIDN L KVDYLTKIE -- E L EEKLNDA --- LHQ K QLLT L R - 105
Cdd:TIGR02169 160 D E I AGVA E FDR K KEKALEEL E EV E E -- NI ER L DLIIDE K RQQLER L RREREKAER yq A L LKEKREY egy ELL K EKEA L E r 237
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 106 ---- LDN QLA FQQKDAS K YQ E LMKQEMETILLRQKQ LEE T N LQLREKAGD ---- V RRNLRDF E LTEEQYIKLK A FP E DQ L 177
Cdd:TIGR02169 238 qkea IER QLA SLEEELE K LT E EISELEKRLEEIEQL LEE L N KKIKDLGEE eqlr V KEKIGEL E AEIASLERSI A EK E RE L 317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 178 SIP E YVSVRFYELVNP L RK EI C E lqvkkni L AE E LSTNKNQLKQ LTE T Y E E DRKNYSEVQIRCQRLAL E L A D T KQLIQQ g 257
Cdd:TIGR02169 318 EDA E ERLAKLEAEIDK L LA EI E E ------- L ER E IEEERKRRDK LTE E Y A E LKEELEDLRAELEEVDK E F A E T RDELKD - 389
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 258 dy RQ E NYD K V K S E RDA L -------------- EQ E VIE L RRKHEIL EA SHMIQTK E RSELSK E VVTL E QTVTL L QK D KEYL 323
Cdd:TIGR02169 390 -- YR E KLE K L K R E INE L kreldrlqeelqrl SE E LAD L NAAIAGI EA KINELEE E KEDKAL E IKKQ E WKLEQ L AA D LSKY 467
330 340 350
....*....|....*....|....*....|..
gi 55769583 324 NRQNME L SVRCAHE E DR L ER LQ AQ L E E SKKAR 355
Cdd:TIGR02169 468 EQELYD L KEEYDRV E KE L SK LQ RE L A E AEAQA 499
EnvC super family
cl34844 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
474-687
5.27e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
COG4942 :Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 43.21
E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 474 QE E TARN L T Q C Q L E CEKYQ K K L EV L T KE FYS L Q --- A SS E K RI TE L QAQNSEHQAR L diy EK LE K EL D E IIMQT AE IEN E 550
Cdd:COG4942 22 AA E AEAE L E Q L Q Q E IAELE K E L AA L K KE EKA L L kql A AL E R RI AA L ARRIRALEQE L --- AA LE A EL A E LEKEI AE LRA E 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 551 D E ------ AE RVLFS Y GY G ANV P TTAKRRLKQSVHLA RR VLQ L EKQN slilkdl EH R KD Q VTQ L SQE L DRANS L LNQTQQ 624
Cdd:COG4942 99 L E aqkeel AE LLRAL Y RL G RQP P LALLLSPEDFLDAV RR LQY L KYLA ------- PA R RE Q AEE L RAD L AELAA L RAELEA 171
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55769583 625 PYRY L IESVRQRDSKIDS L TESI A QLE K DVSN L N KE KSA L --- L QTKN Q M A LD LE Q L LNHR E EL AA 687
Cdd:COG4942 172 ERAE L EALLAELEEERAA L EALK A ERQ K LLAR L E KE LAE L aae L AELQ Q E A EE LE A L IARL E AE AA 237
Name
Accession
Description
Interval
E-value
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
206-540
2.42e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.19
E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 206 NILAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQIRCQR L A L ELADTKQ -- L IQQGDYRQENYDKVKS E RDA LE Q E VI E 280
Cdd:COG1196 192 EDILG EL ERQLEP L E rqa EKA E R Y R E LKEELK E LEAELLL L K L RELEAEL ee L EAELEELEAELEELEA E LAE LE A E LE E 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 281 LR RKH E I LE ASHMIQTK E RS EL SK E VVT LEQ TVTL L QKDKEY L NRQNM EL SVRC A HE E DR LE R L QAQ LEE SKKAR EE mye 360
Cdd:COG1196 272 LR LEL E E LE LELEEAQA E EY EL LA E LAR LEQ DIAR L EERRRE L EERLE EL EEEL A EL E EE LE E L EEE LEE LEEEL EE --- 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 361 kyvasrdhykteyenk LHD ELE QIRLKTNQEIDQ L RN A SR E MY E R E NR nl R E ARDNAVA E KE RA VMAEKDA LE KHDQLLD 440
Cdd:COG1196 349 ---------------- AEE ELE EAEAELAEAEEA L LE A EA E LA E A E EE -- L E ELAEELL E AL RA AAELAAQ LE ELEEAEE 410
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 441 RYR E LQLST E SKVT E FLHQSKLKSF E S E RVQLLQ EE T A RNLTQCQL E C E KYQKK L EV L TK E FYS L Q A SSEKRIT EL QAQN 520
Cdd:COG1196 411 ALL E RLERL E EELE E LEEALAELEE E E E EEEEAL EE A A EEEAELEE E E E ALLEL L AE L LE E AAL L E A ALAELLE EL AEAA 490
330 340
....*....|....*....|
gi 55769583 521 SEHQAR L DIYEKL E KE L DEI 540
Cdd:COG1196 491 ARLLLL L EAEADY E GF L EGV 510
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
208-538
3.70e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 60.46
E-value: 3.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 208 LAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQ ircqr LAL ELADTKQ L iqqgdyr Q E NYDKVKS E RDAL E Q E VI EL RRK 284
Cdd:TIGR02168 194 ILN EL ERQLKS L E rqa EKA E R Y K E LKAELR E LE ----- LAL LVLRLEE L ------- R E ELEELQE E LKEA E E E LE EL TAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 285 HEI LE ASHMIQTK E R SEL SK E VVT L EQTVTL L QKDKEY L NR Q NME L SV R C A HE E DR LE R L Q AQLEE SKKARE E m YEKYV A 364
Cdd:TIGR02168 262 LQE LE EKLEELRL E V SEL EE E IEE L QKELYA L ANEISR L EQ Q KQI L RE R L A NL E RQ LE E L E AQLEE LESKLD E - LAEEL A 340
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 365 SRDHYKT E YENK L HDELEQI -- RLKTNQ E IDQLRNASR E MY E RENRNLREAR dnava EKERAVMA E KDA LE KHDQL L DRY 442
Cdd:TIGR02168 341 ELEEKLE E LKEE L ESLEAEL ee LEAELE E LESRLEELE E QL E TLRSKVAQLE ----- LQIASLNN E IER LE ARLER L EDR 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 443 RE LQLSTESK vtefl HQS KL KSF E SERV Q LLQ EE TARN L TQC Q L E C E KYQKK LE V L TK E F yslq ASS E KRITELQAQNSE 522
Cdd:TIGR02168 416 RE RLQQEIEE ----- LLK KL EEA E LKEL Q AEL EE LEEE L EEL Q E E L E RLEEA LE E L RE E L ---- EEA E QALDAAERELAQ 486
330
....*....|....*.
gi 55769583 523 H QARLD IY E K L EKE L D 538
Cdd:TIGR02168 487 L QARLD SL E R L QEN L E 502
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
32-355
8.48e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 49.30
E-value: 8.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 32 D D I SSSE E REG K VRITRQLI E RK E L lh NI QL L KIELSQ K TMMIDN L KVDYLTKIE -- E L EEKLNDA --- LHQ K QLLT L R - 105
Cdd:TIGR02169 160 D E I AGVA E FDR K KEKALEEL E EV E E -- NI ER L DLIIDE K RQQLER L RREREKAER yq A L LKEKREY egy ELL K EKEA L E r 237
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 106 ---- LDN QLA FQQKDAS K YQ E LMKQEMETILLRQKQ LEE T N LQLREKAGD ---- V RRNLRDF E LTEEQYIKLK A FP E DQ L 177
Cdd:TIGR02169 238 qkea IER QLA SLEEELE K LT E EISELEKRLEEIEQL LEE L N KKIKDLGEE eqlr V KEKIGEL E AEIASLERSI A EK E RE L 317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 178 SIP E YVSVRFYELVNP L RK EI C E lqvkkni L AE E LSTNKNQLKQ LTE T Y E E DRKNYSEVQIRCQRLAL E L A D T KQLIQQ g 257
Cdd:TIGR02169 318 EDA E ERLAKLEAEIDK L LA EI E E ------- L ER E IEEERKRRDK LTE E Y A E LKEELEDLRAELEEVDK E F A E T RDELKD - 389
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 258 dy RQ E NYD K V K S E RDA L -------------- EQ E VIE L RRKHEIL EA SHMIQTK E RSELSK E VVTL E QTVTL L QK D KEYL 323
Cdd:TIGR02169 390 -- YR E KLE K L K R E INE L kreldrlqeelqrl SE E LAD L NAAIAGI EA KINELEE E KEDKAL E IKKQ E WKLEQ L AA D LSKY 467
330 340 350
....*....|....*....|....*....|..
gi 55769583 324 NRQNME L SVRCAHE E DR L ER LQ AQ L E E SKKAR 355
Cdd:TIGR02169 468 EQELYD L KEEYDRV E KE L SK LQ RE L A E AEAQA 499
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
200-499
2.58e-05
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 47.81
E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 200 E LQVKKN I L AE ELSTNKNQLKQ L TETYE E D RK NYS E v Q IR CQRL A L E LADTKQ L IQQGDY RQ ENYDK V KS E RD A L - EQEV 278
Cdd:pfam17380 328 E MDRQAA I Y AE QERMAMERERE L ERIRQ E E RK REL E - R IR QEEI A M E ISRMRE L ERLQME RQ QKNER V RQ E LE A A r KVKI 406
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 279 I E LR R KHE I LEAS - H M I Q TKERS E LSKE vvtl EQTVT L LQKDKEYLN R QNM E LSV R cahe EDRL ERL QA Q L EE S K KARE E 357
Cdd:pfam17380 407 L E EE R QRK I QQQK v E M E Q IRAEQ E EARQ ---- REVRR L EEERAREME R VRL E EQE R ---- QQQV ERL RQ Q E EE R K RKKL E 478
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 358 M y EK YVAS R DHYKTEYENK L HD ELE QIRLKTNQ E IDQLRNASR EM Y ER E nrnlreard N A VA E K ER AVM AE K dalekhdq 437
Cdd:pfam17380 479 L - EK EKRD R KRAEEQRRKI L EK ELE ERKQAMIE E ERKRKLLEK EM E ER Q --------- K A IY E E ER RRE AE E -------- 540
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55769583 438 ll D R YRELQLSTESKV teflh Q SKLKSFES ER VQ L LQE E TA R NLTQCQL E C EK YQKKL E VL T 499
Cdd:pfam17380 541 -- E R RKQQEMEERRRI ----- Q EQMRKATE ER SR L EAM E RE R EMMRQIV E S EK ARAEY E AT T 595
PLN02939
PLN02939 transferase, transferring glycosyl groups
262-515
7.17e-05
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain]
Cd Length: 977
Bit Score: 46.43
E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 262 E NYD K VKS E RD AL EQE -- VI E L R RKH --------------- EILE AS hmi QT K E R S EL SKEVV T LEQT V TL L Q K DKEY L N 324
Cdd:PLN02939 156 E DLE K ILT E KE AL QGK in IL E M R LSE tdariklaaqekihv EILE EQ --- LE K L R N EL LIRGA T EGLC V HS L S K ELDV L K 232
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 325 RQ NM E L svrcahe E D RLER L Q A Q L E E SKKAR E EM yekyvasrdh Y K T E Y E NK L H D ---- ELE QIRLKTNQEIDQ L RNASR 400
Cdd:PLN02939 233 EE NM L L ------- K D DIQF L K A E L I E VAETE E RV ---------- F K L E K E RS L L D aslr ELE SKFIVAQEDVSK L SPLQY 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 401 EMYERENR NL REAR D N A VAEK E R A VM aekd A L EKHDQ L L D RYRE L QL S - T E SK V TE F ------ L H Q S KLK SF E s ER V Q LL 473
Cdd:PLN02939 296 DCWWEKVE NL QDLL D R A TNQV E K A AL ---- V L DQNQD L R D KVDK L EA S l K E AN V SK F ssykve L L Q Q KLK LL E - ER L Q AS 370
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 55769583 474 QE E T arn LTQC QL ecek YQ KKLEVLTKEFYS L QAS S E KR IT E 515
Cdd:PLN02939 371 DH E I --- HSYI QL ---- YQ ESIKEFQDTLSK L KEE S K KR SL E 405
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
474-687
5.27e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 43.21
E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 474 QE E TARN L T Q C Q L E CEKYQ K K L EV L T KE FYS L Q --- A SS E K RI TE L QAQNSEHQAR L diy EK LE K EL D E IIMQT AE IEN E 550
Cdd:COG4942 22 AA E AEAE L E Q L Q Q E IAELE K E L AA L K KE EKA L L kql A AL E R RI AA L ARRIRALEQE L --- AA LE A EL A E LEKEI AE LRA E 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 551 D E ------ AE RVLFS Y GY G ANV P TTAKRRLKQSVHLA RR VLQ L EKQN slilkdl EH R KD Q VTQ L SQE L DRANS L LNQTQQ 624
Cdd:COG4942 99 L E aqkeel AE LLRAL Y RL G RQP P LALLLSPEDFLDAV RR LQY L KYLA ------- PA R RE Q AEE L RAD L AELAA L RAELEA 171
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55769583 625 PYRY L IESVRQRDSKIDS L TESI A QLE K DVSN L N KE KSA L --- L QTKN Q M A LD LE Q L LNHR E EL AA 687
Cdd:COG4942 172 ERAE L EALLAELEEERAA L EALK A ERQ K LLAR L E KE LAE L aae L AELQ Q E A EE LE A L IARL E AE AA 237
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
74-292
5.00e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 40.28
E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 74 I D N L k V DYLTKI E ELE E K L N DA LH Q KQ LL TLRLDNQLAFQQK -- DASKYQE L MK ----- QEMETIL L RQKQ LEE TNLQ L R 146
Cdd:COG4913 227 A D A L - V EHFDDL E RAH E A L E DA RE Q IE LL EPIRELAERYAAA re RLAELEY L RA alrlw FAQRRLE L LEAE LEE LRAE L A 305
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 147 EKAGDVR R NLRDFELTE E QYIK L K A fpe DQLSIP eyvsvrf YELVNP L RK EI CE L QVKKNILAEELSTNKNQ L KQ L TETY 226
Cdd:COG4913 306 RLEAELE R LEARLDALR E ELDE L E A --- QIRGNG ------- GDRLEQ L ER EI ER L ERELEERERRRARLEAL L AA L GLPL 375
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55769583 227 EEDRKNYSEVQIRCQR L ALE L ADTKQLIQQ gdyrqe NYDKVKSERDA L EQ E VI EL RRKHEI LE ASH 292
Cdd:COG4913 376 PASAEEFAALRAEAAA L LEA L EEELEALEE ------ ALAEAEAALRD L RR E LR EL EAEIAS LE RRK 435
Name
Accession
Description
Interval
E-value
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
206-540
2.42e-10
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 64.19
E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 206 NILAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQIRCQR L A L ELADTKQ -- L IQQGDYRQENYDKVKS E RDA LE Q E VI E 280
Cdd:COG1196 192 EDILG EL ERQLEP L E rqa EKA E R Y R E LKEELK E LEAELLL L K L RELEAEL ee L EAELEELEAELEELEA E LAE LE A E LE E 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 281 LR RKH E I LE ASHMIQTK E RS EL SK E VVT LEQ TVTL L QKDKEY L NRQNM EL SVRC A HE E DR LE R L QAQ LEE SKKAR EE mye 360
Cdd:COG1196 272 LR LEL E E LE LELEEAQA E EY EL LA E LAR LEQ DIAR L EERRRE L EERLE EL EEEL A EL E EE LE E L EEE LEE LEEEL EE --- 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 361 kyvasrdhykteyenk LHD ELE QIRLKTNQEIDQ L RN A SR E MY E R E NR nl R E ARDNAVA E KE RA VMAEKDA LE KHDQLLD 440
Cdd:COG1196 349 ---------------- AEE ELE EAEAELAEAEEA L LE A EA E LA E A E EE -- L E ELAEELL E AL RA AAELAAQ LE ELEEAEE 410
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 441 RYR E LQLST E SKVT E FLHQSKLKSF E S E RVQLLQ EE T A RNLTQCQL E C E KYQKK L EV L TK E FYS L Q A SSEKRIT EL QAQN 520
Cdd:COG1196 411 ALL E RLERL E EELE E LEEALAELEE E E E EEEEAL EE A A EEEAELEE E E E ALLEL L AE L LE E AAL L E A ALAELLE EL AEAA 490
330 340
....*....|....*....|
gi 55769583 521 SEHQAR L DIYEKL E KE L DEI 540
Cdd:COG1196 491 ARLLLL L EAEADY E GF L EGV 510
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
208-538
3.70e-09
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 60.46
E-value: 3.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 208 LAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQ ircqr LAL ELADTKQ L iqqgdyr Q E NYDKVKS E RDAL E Q E VI EL RRK 284
Cdd:TIGR02168 194 ILN EL ERQLKS L E rqa EKA E R Y K E LKAELR E LE ----- LAL LVLRLEE L ------- R E ELEELQE E LKEA E E E LE EL TAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 285 HEI LE ASHMIQTK E R SEL SK E VVT L EQTVTL L QKDKEY L NR Q NME L SV R C A HE E DR LE R L Q AQLEE SKKARE E m YEKYV A 364
Cdd:TIGR02168 262 LQE LE EKLEELRL E V SEL EE E IEE L QKELYA L ANEISR L EQ Q KQI L RE R L A NL E RQ LE E L E AQLEE LESKLD E - LAEEL A 340
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 365 SRDHYKT E YENK L HDELEQI -- RLKTNQ E IDQLRNASR E MY E RENRNLREAR dnava EKERAVMA E KDA LE KHDQL L DRY 442
Cdd:TIGR02168 341 ELEEKLE E LKEE L ESLEAEL ee LEAELE E LESRLEELE E QL E TLRSKVAQLE ----- LQIASLNN E IER LE ARLER L EDR 415
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 443 RE LQLSTESK vtefl HQS KL KSF E SERV Q LLQ EE TARN L TQC Q L E C E KYQKK LE V L TK E F yslq ASS E KRITELQAQNSE 522
Cdd:TIGR02168 416 RE RLQQEIEE ----- LLK KL EEA E LKEL Q AEL EE LEEE L EEL Q E E L E RLEEA LE E L RE E L ---- EEA E QALDAAERELAQ 486
330
....*....|....*.
gi 55769583 523 H QARLD IY E K L EKE L D 538
Cdd:TIGR02168 487 L QARLD SL E R L QEN L E 502
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
125-404
1.27e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 55.45
E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 125 KQ E M E TILLRQKQ LEE TNLQ L REKAGDV R RN L RDF E LTE EQ YI K LKAFPED Q L S IPEYVSV R FYEL V NP L RKE I CE L QVK 204
Cdd:TIGR02168 676 RR E I E ELEEKIEE LEE KIAE L EKALAEL R KE L EEL E EEL EQ LR K ELEELSR Q I S ALRKDLA R LEAE V EQ L EER I AQ L SKE 755
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 205 KNI L AE E LSTNKNQ L KQLT E TYE E DRKNYS E VQIRCQR L AL EL ADTKQLIQ -- QGDYRQE N -- YDKVKSERDA LE QEVIE 280
Cdd:TIGR02168 756 LTE L EA E IEELEER L EEAE E ELA E AEAEIE E LEAQIEQ L KE EL KALREALD el RAELTLL N ee AANLRERLES LE RRIAA 835
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 281 LR R KH E I LE ASHMIQTKERSE L SK E VVT LE QTVTL L QKDK E Y L NRQNME L SVRC A HEEDR LE R L QAQ L E E SKKA R E E MYE 360
Cdd:TIGR02168 836 TE R RL E D LE EQIEELSEDIES L AA E IEE LE ELIEE L ESEL E A L LNERAS L EEAL A LLRSE LE E L SEE L R E LESK R S E LRR 915
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 55769583 361 KYVAS R DH yktey ENK L HDE LE QIRLKTNQEIDQ L RNASREMY E 404
Cdd:TIGR02168 916 ELEEL R EK ----- LAQ L ELR LE GLEVRIDNLQER L SEEYSLTL E 954
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
113-687
4.49e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 53.40
E-value: 4.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 113 Q QKD A SK Y Q EL MKQEM E T - IL L RQKQ L E E TNLQ L R E KAGDVRRNLRDF E LT E EQYIK L K A fpedqlsipeyvsvrfye LV 191
Cdd:COG1196 208 Q AEK A ER Y R EL KEELK E L e AE L LLLK L R E LEAE L E E LEAELEELEAEL E EL E AELAE L E A ------------------ EL 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 192 NP LR K E IC EL QVKKNILAE E LSTNKNQ L KQ L TETYEEDRKNYS E VQI R CQR L AL ELA DTKQLIQQ gdyrqenydk VKS E R 271
Cdd:COG1196 270 EE LR L E LE EL ELELEEAQA E EYELLAE L AR L EQDIARLEERRR E LEE R LEE L EE ELA ELEEELEE ---------- LEE E L 339
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 272 DA LE Q E VI E LRRKH E IL EA SHMIQTKERS E LSK E VVTL E QTVTL L QKDKEYLN R QNM EL SVRCAHE E DRL E R L QAQ LE ES 351
Cdd:COG1196 340 EE LE E E LE E AEEEL E EA EA ELAEAEEALL E AEA E LAEA E EELEE L AEELLEAL R AAA EL AAQLEEL E EAE E A L LER LE RL 419
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 352 KKAR EE MY E KYVASRDHYKT E Y E NKLHDEL E QIR L KTNQ E IDQLRN A SREMYERENRNLREARDNAV AE KERAVMAEKD A 431
Cdd:COG1196 420 EEEL EE LE E ALAELEEEEEE E E E ALEEAAE E EAE L EEEE E ALLELL A ELLEEAALLEAALAELLEEL AE AAARLLLLLE A 499
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 432 LEKHDQL L DRYRELQ L STE - SKVTEFLHQ sk L KSF E SERVQL L QEET A RN L TQCQL E CEKYQKKLEVL tkefys L Q A SSE 510
Cdd:COG1196 500 EADYEGF L EGVKAAL L LAG l RGLAGAVAV -- L IGV E AAYEAA L EAAL A AA L QNIVV E DDEVAAAAIEY ------ L K A AKA 571
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 511 K R I T E L QAQNSEHQ A R L DIYEKLEKELDEIIMQTAEIENE D EAER VL FSYGY G ANVPT ---- T A K RR LKQSVHLA R R V LQ 586
Cdd:COG1196 572 G R A T F L PLDKIRAR A A L AAALARGAIGAAVDLVASDLREA D ARYY VL GDTLL G RTLVA arle A A L RR AVTLAGRL R E V TL 651
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 587 LEKQN S LILKDLEHRKDQVTQLSQ E LDRANSL L NQTQQ py RYLI E SVRQRDSKIDSLT E SIAQL E KDVSNLNK E KSALL Q 666
Cdd:COG1196 652 EGEGG S AGGSLTGGSRRELLAALL E AEAELEE L AERLA -- EEEL E LEEALLAEEEEER E LAEAE E ERLEEELE E EALEE Q 729
570 580
....*....|....*....|.
gi 55769583 667 TKNQMALD LE Q LL NHR E E L AA 687
Cdd:COG1196 730 LEAEREEL LE E LL EEE E L L EE 750
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
265-667
7.39e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 52.75
E-value: 7.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 265 D K VK S ERDALEQ E VI EL RR K H E I LE ASHMIQT K ERS EL S KE VVT LE QTVTL L Q K DK E Y L N RQ NME L SVRC A HE E DRL E R L 344
Cdd:TIGR02168 666 A K TN S SILERRR E IE EL EE K I E E LE EKIAELE K ALA EL R KE LEE LE EELEQ L R K EL E E L S RQ ISA L RKDL A RL E AEV E Q L 745
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 345 QAQLEESK K ARE E MYEKYVASRD hy KT E YENKLHD E L E QIRLKTNQE I D QL RN --- A S RE MYERENRN L REARDN A VAEK 421
Cdd:TIGR02168 746 EERIAQLS K ELT E LEAEIEELEE -- RL E EAEEELA E A E AEIEELEAQ I E QL KE elk A L RE ALDELRAE L TLLNEE A ANLR 823
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 422 ER AVMA E KDALEKHDQ L ldryrelqlsteskvt E F L HQSK lksfes E RVQLLQ E ET A RNLTQCQLEC E KYQKK LE V L TK E 501
Cdd:TIGR02168 824 ER LESL E RRIAATERR L ---------------- E D L EEQI ------ E ELSEDI E SL A AEIEELEELI E ELESE LE A L LN E 881
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 502 FY SL QASSEKRIT EL QAQNS E HQARLDIYEK L EK EL D E IIMQT A EI E NED E AER V lfsygyga NVPTTAK R RLKQSVHLA 581
Cdd:TIGR02168 882 RA SL EEALALLRS EL EELSE E LRELESKRSE L RR EL E E LREKL A QL E LRL E GLE V -------- RIDNLQE R LSEEYSLTL 953
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 582 RRVLQ LE KQNSLILKDLEH R KDQVTQLSQ EL DRA N SL ---- LNQTQQP Y RY L iesvrqr DSKIDS LTE SIAQ LE KDVSNL 657
Cdd:TIGR02168 954 EEAEA LE NKIEDDEEEARR R LKRLENKIK EL GPV N LA aiee YEELKER Y DF L ------- TAQKED LTE AKET LE EAIEEI 1026
410
....*....|
gi 55769583 658 NK E KSALLQT 667
Cdd:TIGR02168 1027 DR E ARERFKD 1036
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
36-412
2.80e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 51.22
E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 36 S SEE R E G KVRITRQLI E RKE L LHNIQL LK I ELS --- QKTMM I D N LKVDYLTKIEELEE K LNDALHQKQL L t LRLDNQ L AF 112
Cdd:TIGR02169 659 S RAP R G G ILFSRSEPA E LQR L RERLEG LK R ELS slq SELRR I E N RLDELSQELSDASR K IGEIEKEIEQ L - EQEEEK L KE 737
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 113 QQKDASKYQELMK QE M E TILLRQ K Q LE ETNLQ L R E KAGDVRRN L R D F E -- L TEEQYIKL kafp EDQ LS IP E YVSV R FYEL 190
Cdd:TIGR02169 738 RLEELEEDLSSLE QE I E NVKSEL K E LE ARIEE L E E DLHKLEEA L N D L E ar L SHSRIPEI ---- QAE LS KL E EEVS R IEAR 813
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 191 VNPLRKEICE L QVK K NI L AE E LSTNKN Q LKQ L T E TYEEDR K NYSEVQIRCQR L AL EL ADTKQLIQQGD yrq ENYDKV K S E 270
Cdd:TIGR02169 814 LREIEQKLNR L TLE K EY L EK E IQELQE Q RID L K E QIKSIE K EIENLNGKKEE L EE EL EELEAALRDLE --- SRLGDL K K E 890
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 271 RD A LE QEVI EL R RK H E I LEA SHMIQT K ER SEL SKEVVT LE QTVTLLQKD K EYLNRQNM E LSV -- RCAH E ED R L E RLQAQ L 348
Cdd:TIGR02169 891 RD E LE AQLR EL E RK I E E LEA QIEKKR K RL SEL KAKLEA LE EELSEIEDP K GEDEEIPE E ELS le DVQA E LQ R V E EEIRA L 970
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 55769583 349 E ESKKAREEM YE KYVASR D HY K t E YEN KL HD E LEQ I RLKTNQEIDQL R NASR E MY E RE N R N LR E 412
Cdd:TIGR02169 971 E PVNMLAIQE YE EVLKRL D EL K - E KRA KL EE E RKA I LERIEEYEKKK R EVFM E AF E AI N E N FN E 1033
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
242-547
2.96e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 50.83
E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 242 R L ALELADTKQL I QQG dyr QENYDKVKS E RDA LE Q E VIE LR RKH E I L EASHMIQT K ERSE L SK EV VT LE QTVTL L Q K DKE 321
Cdd:TIGR02168 681 E L EEKIEELEEK I AEL --- EKALAELRK E LEE LE E E LEQ LR KEL E E L SRQISALR K DLAR L EA EV EQ LE ERIAQ L S K ELT 757
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 322 Y L NRQNM EL SV R CAHE ------- E DRL E R L Q AQ L E ES K KAREEMY E KYVAS R DHYKT eyenk L HD E LEQI R LKTNQEIDQ 394
Cdd:TIGR02168 758 E L EAEIE EL EE R LEEA eeelaea E AEI E E L E AQ I E QL K EELKALR E ALDEL R AELTL ----- L NE E AANL R ERLESLERR 832
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 395 LRNAS R EMYER E NR -- N L R E ARDNAV AE K E RAVMAEKDALEKHDQ LL DRYRE L QLSTESKVT E F - LHQSK L KSF ES E R VQ 471
Cdd:TIGR02168 833 IAATE R RLEDL E EQ ie E L S E DIESLA AE I E ELEELIEELESELEA LL NERAS L EEALALLRS E L e ELSEE L REL ES K R SE 912
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55769583 472 L LQ E etarn L TQCQLECEKYQKK LE V L TKEFYS LQ AS - SE KRITE L QAQNSEHQARL D IY E KLEKE L DEIIMQTA E I 547
Cdd:TIGR02168 913 L RR E ----- L EELREKLAQLELR LE G L EVRIDN LQ ER l SE EYSLT L EEAEALENKIE D DE E EARRR L KRLENKIK E L 984
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
32-355
8.48e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 49.30
E-value: 8.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 32 D D I SSSE E REG K VRITRQLI E RK E L lh NI QL L KIELSQ K TMMIDN L KVDYLTKIE -- E L EEKLNDA --- LHQ K QLLT L R - 105
Cdd:TIGR02169 160 D E I AGVA E FDR K KEKALEEL E EV E E -- NI ER L DLIIDE K RQQLER L RREREKAER yq A L LKEKREY egy ELL K EKEA L E r 237
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 106 ---- LDN QLA FQQKDAS K YQ E LMKQEMETILLRQKQ LEE T N LQLREKAGD ---- V RRNLRDF E LTEEQYIKLK A FP E DQ L 177
Cdd:TIGR02169 238 qkea IER QLA SLEEELE K LT E EISELEKRLEEIEQL LEE L N KKIKDLGEE eqlr V KEKIGEL E AEIASLERSI A EK E RE L 317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 178 SIP E YVSVRFYELVNP L RK EI C E lqvkkni L AE E LSTNKNQLKQ LTE T Y E E DRKNYSEVQIRCQRLAL E L A D T KQLIQQ g 257
Cdd:TIGR02169 318 EDA E ERLAKLEAEIDK L LA EI E E ------- L ER E IEEERKRRDK LTE E Y A E LKEELEDLRAELEEVDK E F A E T RDELKD - 389
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 258 dy RQ E NYD K V K S E RDA L -------------- EQ E VIE L RRKHEIL EA SHMIQTK E RSELSK E VVTL E QTVTL L QK D KEYL 323
Cdd:TIGR02169 390 -- YR E KLE K L K R E INE L kreldrlqeelqrl SE E LAD L NAAIAGI EA KINELEE E KEDKAL E IKKQ E WKLEQ L AA D LSKY 467
330 340 350
....*....|....*....|....*....|..
gi 55769583 324 NRQNME L SVRCAHE E DR L ER LQ AQ L E E SKKAR 355
Cdd:TIGR02169 468 EQELYD L KEEYDRV E KE L SK LQ RE L A E AEAQA 499
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
183-550
1.08e-05
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 49.30
E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 183 V S VRFYELVNP LR KEICE L QVKKNI L AE EL STNK N Q L KQ L TETYEEDRKNYS E VQIRCQR L AL E LADT K QLIQQG ---- D 258
Cdd:TIGR02169 668 F S RSEPAELQR LR ERLEG L KRELSS L QS EL RRIE N R L DE L SQELSDASRKIG E IEKEIEQ L EQ E EEKL K ERLEEL eedl S 747
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 259 YRQENYDK VKSE RDA LE QEVI EL RRKHEI LE AS ---------- HM I QT --------- K E R S ELSKEVVTL EQ TVTL L QKD 319
Cdd:TIGR02169 748 SLEQEIEN VKSE LKE LE ARIE EL EEDLHK LE EA lndlearlsh SR I PE iqaelskle E E V S RIEARLREI EQ KLNR L TLE 827
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 320 KEYL NRQNM EL SVRCAHEEDRLERLQAQL E ESKKAR EE M yekyvasrdhykteyenklhdeleqirlkt NQ E IDQ L RN A S 399
Cdd:TIGR02169 828 KEYL EKEIQ EL QEQRIDLKEQIKSIEKEI E NLNGKK EE L ------------------------------ EE E LEE L EA A L 877
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 400 R E m Y E RENRN L REA RD NAV A EKERAVMAEKDALEKHDQLLD R YR EL QLST E SK vteflh QSK L KSF E SERVQLLQE etar 479
Cdd:TIGR02169 878 R D - L E SRLGD L KKE RD ELE A QLRELERKIEELEAQIEKKRK R LS EL KAKL E AL ------ EEE L SEI E DPKGEDEEI ---- 946
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55769583 480 nl TQCQ L EC E KY Q KK L EVLTK E FYS L QASSEKR I T E LQ aqns E HQA RLD IYE ---- KLE K E LDE I IMQTA E I E NE 550
Cdd:TIGR02169 947 -- PEEE L SL E DV Q AE L QRVEE E IRA L EPVNMLA I Q E YE ---- E VLK RLD ELK ekra KLE E E RKA I LERIE E Y E KK 1015
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
200-499
2.58e-05
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 47.81
E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 200 E LQVKKN I L AE ELSTNKNQLKQ L TETYE E D RK NYS E v Q IR CQRL A L E LADTKQ L IQQGDY RQ ENYDK V KS E RD A L - EQEV 278
Cdd:pfam17380 328 E MDRQAA I Y AE QERMAMERERE L ERIRQ E E RK REL E - R IR QEEI A M E ISRMRE L ERLQME RQ QKNER V RQ E LE A A r KVKI 406
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 279 I E LR R KHE I LEAS - H M I Q TKERS E LSKE vvtl EQTVT L LQKDKEYLN R QNM E LSV R cahe EDRL ERL QA Q L EE S K KARE E 357
Cdd:pfam17380 407 L E EE R QRK I QQQK v E M E Q IRAEQ E EARQ ---- REVRR L EEERAREME R VRL E EQE R ---- QQQV ERL RQ Q E EE R K RKKL E 478
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 358 M y EK YVAS R DHYKTEYENK L HD ELE QIRLKTNQ E IDQLRNASR EM Y ER E nrnlreard N A VA E K ER AVM AE K dalekhdq 437
Cdd:pfam17380 479 L - EK EKRD R KRAEEQRRKI L EK ELE ERKQAMIE E ERKRKLLEK EM E ER Q --------- K A IY E E ER RRE AE E -------- 540
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55769583 438 ll D R YRELQLSTESKV teflh Q SKLKSFES ER VQ L LQE E TA R NLTQCQL E C EK YQKKL E VL T 499
Cdd:pfam17380 541 -- E R RKQQEMEERRRI ----- Q EQMRKATE ER SR L EAM E RE R EMMRQIV E S EK ARAEY E AT T 595
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
218-667
5.75e-05
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 46.83
E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 218 QLKQ L T E T Y EED R KNYS E VQIRCQR L A L EL A DTKQLIQQGDYR -- QENYDKVKS E RDA LE QEVIE LR RKHEI LEA SHM - I 294
Cdd:COG4913 256 PIRE L A E R Y AAA R ERLA E LEYLRAA L R L WF A QRRLELLEAELE el RAELARLEA E LER LE ARLDA LR EELDE LEA QIR g N 335
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 295 QTKERSE L SK E VVT LE QTVTLLQKDKEY L NRQNME L SVRCAHEEDRLER L Q A QLEESKK A R EE MY E KYVASRD hykt E Y E 374
Cdd:COG4913 336 GGDRLEQ L ER E IER LE RELEERERRRAR L EALLAA L GLPLPASAEEFAA L R A EAAALLE A L EE EL E ALEEALA ---- E A E 411
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 375 NK L H D ELEQI R l KTNQ EI DQ L R n ASREMYERENRN LR E -- A RDNAVA E K E RAVMA E ----------- KD A L E K ------- 434
Cdd:COG4913 412 AA L R D LRREL R - ELEA EI AS L E - RRKSNIPARLLA LR D al A EALGLD E A E LPFVG E lievrpeeerw RG A I E R vlggfal 489
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 435 -------- HDQL L DRYRE L Q L STE --- SK V TEF L HQSKLKSFE ---- SERVQL -------- L QE E TA R -- NLTQC ---- Q 485
Cdd:COG4913 490 tllvppeh YAAA L RWVNR L H L RGR lvy ER V RTG L PDPERPRLD pdsl AGKLDF kphpfraw L EA E LG R rf DYVCV dspe E 569
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 486 L ECEK --------------- YQ K KLEVLTKEF Y S L QASSEKRITE L Q A QNS E HQAR L D iye KL E KE L DEIIMQTAEIENE 550
Cdd:COG4913 570 L RRHP raitragqvkgngtr HE K DDRRRIRSR Y V L GFDNRAKLAA L E A ELA E LEEE L A --- EA E ER L EALEAELDALQER 646
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 551 D EA ERV L FS Y GY ganvptt AKRRLKQ svh LA R RVLQ LE KQ nsli L KD L EHRK D QVTQ L SQE L DRANSL L NQTQQPYRY L I 630
Cdd:COG4913 647 R EA LQR L AE Y SW ------- DEIDVAS --- AE R EIAE LE AE ---- L ER L DASS D DLAA L EEQ L EELEAE L EELEEELDE L K 712
490 500 510
....*....|....*....|....*....|....*..
gi 55769583 631 ESVRQRDSKIDSLT E SIAQ L EKDVSNLNKEKSAL L QT 667
Cdd:COG4913 713 GEIGRLEKELEQAE E ELDE L QDRLEAAEDLARLE L RA 749
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
194-417
5.84e-05
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 46.83
E-value: 5.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 194 L RK E IC EL QVKKNILA E E L STNKNQ L KQ L T E TY E -- EDRKN YS EVQ I RCQRLAL E L A DTKQLIQQ ----- G D YR -- Q E NY 264
Cdd:COG4913 615 L EA E LA EL EEELAEAE E R L EALEAE L DA L Q E RR E al QRLAE YS WDE I DVASAER E I A ELEAELER ldass D D LA al E E QL 694
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 265 DKVKS E RDA LE Q E VI EL RRKHEI LE ASHMIQTK E RS EL SKEVVTL E QTVT L LQ kd KEY L NRQNMELSVR c A H E EDRL E R L 344
Cdd:COG4913 695 EELEA E LEE LE E E LD EL KGEIGR LE KELEQAEE E LD EL QDRLEAA E DLAR L EL -- RAL L EERFAAALGD - A V E RELR E N L 771
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 345 QAQLEESKKAREEMY E KYVASRDHYKT E YEN ---------------- K L H D E LE QIR L KTNQ E -- IDQ L RNA S R E MYERE 406
Cdd:COG4913 772 EERIDALRARLNRAE E ELERAMRAFNR E WPA etadldadleslpeyl A L L D R LE EDG L PEYE E rf KEL L NEN S I E FVADL 851
250
....*....|.
gi 55769583 407 NRN LR E A RDNA 417
Cdd:COG4913 852 LSK LR R A IREI 862
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
87-708
6.32e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 46.59
E-value: 6.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 87 EL EEK L NDA lh QKQ LL T LRL D --- NQ L AFQ Q KDASKYQ E LMKQEMETILLRQKQ LEE TN L QLR E KA ---------- GDVR 153
Cdd:TIGR02168 217 EL KAE L REL -- ELA LL V LRL E elr EE L EEL Q EELKEAE E ELEELTAELQELEEK LEE LR L EVS E LE eeieelqkel YALA 294
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 154 RNLRDF E LTEEQYIKLK A FP E D QL SIP E YVSVRFY ------- E LVNP L RKEIC EL QVKKNI L AE EL STNKNQ L KQ L TETY 226
Cdd:TIGR02168 295 NEISRL E QQKQILRERL A NL E R QL EEL E AQLEELE skldela E ELAE L EEKLE EL KEELES L EA EL EELEAE L EE L ESRL 374
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 227 EE DRKNY sevqirc QR L ALEL A DTKQL I QQGDYRQ E NYDKVKS erd A LE QEVIE L RR kh EI L E ASHMIQTK E RS EL SK E V 306
Cdd:TIGR02168 375 EE LEEQL ------- ET L RSKV A QLELQ I ASLNNEI E RLEARLE --- R LE DRRER L QQ -- EI E E LLKKLEEA E LK EL QA E L 442
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 307 VT LE QTVTL LQ KDK E Y L NRQNM EL SVRCAHE E DR L ERLQAQ L EE s KK AR EEMY E KYVASRDHY k T E YENK L HDELEQIRL 386
Cdd:TIGR02168 443 EE LE EELEE LQ EEL E R L EEALE EL REELEEA E QA L DAAERE L AQ - LQ AR LDSL E RLQENLEGF - S E GVKA L LKNQSGLSG 520
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 387 KTNQEIDQLR na SR E M YE RE - NRN L REARDNA V A E KER A VMAEKDA L EKHDQLLDRYRE L QLSTESKV t EFLHQSK LK SF 465
Cdd:TIGR02168 521 ILGVLSELIS -- VD E G YE AA i EAA L GGRLQAV V V E NLN A AKKAIAF L KQNELGRVTFLP L DSIKGTEI - QGNDREI LK NI 597
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 466 E SERVQLLQEET ------------------ ARN L TQCQLECE K YQKKLEVL T KEFYSLQAS ------ S E K RITELQAQNS 521
Cdd:TIGR02168 598 E GFLGVAKDLVK fdpklrkalsyllggvlv VDD L DNALELAK K LRPGYRIV T LDGDLVRPG gvitgg S A K TNSSILERRR 677
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 522 E hqarldi Y E K LE KELD E IIMQT AE I E NE - D E AERV L FSYGYGANVPTTAKRR L KQSVHLA R RV L Q - LE KQNSLILKDLE 599
Cdd:TIGR02168 678 E ------- I E E LE EKIE E LEEKI AE L E KA l A E LRKE L EELEEELEQLRKELEE L SRQISAL R KD L A r LE AEVEQLEERIA 750
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 600 HRKDQV T Q L SQ E LDRANSL L NQTQQPYRYLIESVRQRDSK I DS L T E SIAQ L EKDVSN L NK E KSA L LQTKNQMALD LE Q L L 679
Cdd:TIGR02168 751 QLSKEL T E L EA E IEELEER L EEAEEELAEAEAEIEELEAQ I EQ L K E ELKA L REALDE L RA E LTL L NEEAANLRER LE S L E 830
650 660
....*....|....*....|....*....
gi 55769583 680 NHREELAAMKQI L VKMHSKH SE NSLL L TK 708
Cdd:TIGR02168 831 RRIAATERRLED L EEQIEEL SE DIES L AA 859
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
125-357
6.57e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 45.91
E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 125 KQ E M E TI llr Q KQLE E TNLQ L REKAGDVRRN L RDFELT E EQYIK L kafp EDQLSIP E yvsvrfy ELVNP L RK E IC EL QVK 204
Cdd:COG4942 26 EA E L E QL --- Q QEIA E LEKE L AALKKEEKAL L KQLAAL E RRIAA L ---- ARRIRAL E ------- QELAA L EA E LA EL EKE 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 205 KNI L AE EL STN K NQ L - KQ L TET Y EED R KNYSEVQIRCQRLALELADTKQ L IQQGDY R Q E NYDKVKSERDA L EQEVI EL RR 283
Cdd:COG4942 92 IAE L RA EL EAQ K EE L a EL L RAL Y RLG R QPPLALLLSPEDFLDAVRRLQY L KYLAPA R R E QAEELRADLAE L AALRA EL EA 171
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 55769583 284 KHEI LEA SHMIQTK ER SE L SKEVVTLEQTVTL L Q K DKEY L NRQNM EL svrc AH E EDR LE R L Q A Q LE ESKK A RE E 357
Cdd:COG4942 172 ERAE LEA LLAELEE ER AA L EALKAERQKLLAR L E K ELAE L AAELA EL ---- QQ E AEE LE A L I A R LE AEAA A AA E 241
PLN02939
PLN02939 transferase, transferring glycosyl groups
262-515
7.17e-05
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain]
Cd Length: 977
Bit Score: 46.43
E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 262 E NYD K VKS E RD AL EQE -- VI E L R RKH --------------- EILE AS hmi QT K E R S EL SKEVV T LEQT V TL L Q K DKEY L N 324
Cdd:PLN02939 156 E DLE K ILT E KE AL QGK in IL E M R LSE tdariklaaqekihv EILE EQ --- LE K L R N EL LIRGA T EGLC V HS L S K ELDV L K 232
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 325 RQ NM E L svrcahe E D RLER L Q A Q L E E SKKAR E EM yekyvasrdh Y K T E Y E NK L H D ---- ELE QIRLKTNQEIDQ L RNASR 400
Cdd:PLN02939 233 EE NM L L ------- K D DIQF L K A E L I E VAETE E RV ---------- F K L E K E RS L L D aslr ELE SKFIVAQEDVSK L SPLQY 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 401 EMYERENR NL REAR D N A VAEK E R A VM aekd A L EKHDQ L L D RYRE L QL S - T E SK V TE F ------ L H Q S KLK SF E s ER V Q LL 473
Cdd:PLN02939 296 DCWWEKVE NL QDLL D R A TNQV E K A AL ---- V L DQNQD L R D KVDK L EA S l K E AN V SK F ssykve L L Q Q KLK LL E - ER L Q AS 370
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 55769583 474 QE E T arn LTQC QL ecek YQ KKLEVLTKEFYS L QAS S E KR IT E 515
Cdd:PLN02939 371 DH E I --- HSYI QL ---- YQ ESIKEFQDTLSK L KEE S K KR SL E 405
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
18-555
1.27e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 45.70
E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 18 LE S E DIS LE TTVPTDDISSS E E R EGKVRITRQ L I E RKELLHNIQLLKIE L S Q KTMMIDNLKVDYLTKI EELEE K L NDALH 97
Cdd:COG1196 251 LE A E LEE LE AELAELEAELE E L R LELEELELE L E E AQAEEYELLAELAR L E Q DIARLEERRRELEERL EELEE E L AELEE 330
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 98 QKQL L TLR L DNQLA f QQKD A SKYQ E LMKQ E METILLRQKQL E ETNLQLR E KAGDVRRN L RDFELTEEQYIKLKAFP E DQL 177
Cdd:COG1196 331 ELEE L EEE L EELEE - ELEE A EEEL E EAEA E LAEAEEALLEA E AELAEAE E ELEELAEE L LEALRAAAELAAQLEEL E EAE 409
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 178 SI peyvsvrfyelvnp L RKEICE L QVKKNI L A E E L STNKNQLKQLT E TY EE DRKNYS E VQIRCQR L ALE LA DTKQLIQQG 257
Cdd:COG1196 410 EA -------------- L LERLER L EEELEE L E E A L AELEEEEEEEE E AL EE AAEEEA E LEEEEEA L LEL LA ELLEEAALL 475
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 258 DYRQENYDKVKS E RD A LEQEVI E LRRKH E ILEAS hmiq T K ERSE L SKEVVTLEQTVT L LQKDKE Y LNRQNME L SVRCAHE 337
Cdd:COG1196 476 EAALAELLEELA E AA A RLLLLL E AEADY E GFLEG ---- V K AALL L AGLRGLAGAVAV L IGVEAA Y EAALEAA L AAALQNI 551
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 338 - EDRL E RLQ A QL E ES K K A REEMYEKYVASRDHYKTEYENK L HDELEQIRL ktn QEIDQLRNASREM Y ERENRN L REARDN 416
Cdd:COG1196 552 v VEDD E VAA A AI E YL K A A KAGRATFLPLDKIRARAALAAA L ARGAIGAAV --- DLVASDLREADAR Y YVLGDT L LGRTLV 628
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 417 A VAEKERAVM A EKD A LEKHDQL L DRYRELQLSTESKVTEFLHQSK L KSF E S E RVQ L LQEETARN L TQCQLECEKYQKKL E 496
Cdd:COG1196 629 A ARLEAALRR A VTL A GRLREVT L EGEGGSAGGSLTGGSRRELLAA L LEA E A E LEE L AERLAEEE L ELEEALLAEEEEER E 708
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 55769583 497 VLTK E FYS L QASS E KRIT E L Q AQNSEHQARLDIY E KL E KELD E IIMQTA E IENED E A ER 555
Cdd:COG1196 709 LAEA E EER L EEEL E EEAL E E Q LEAEREELLEELL E EE E LLEE E ALEELP E PPDLE E L ER 767
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
124-552
1.40e-04
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 45.44
E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 124 MKQ E M E TI L LRQKQLEETNLQ LRE KAGDVRRNLRDF E LTE E QYIK L KA fped Q L SIP E YVSVRFY E LVNP L RKE I C EL QV 203
Cdd:PRK03918 198 KEK E L E EV L REINEISSELPE LRE ELEKLEKEVKEL E ELK E EIEE L EK ---- E L ESL E GSKRKLE E KIRE L EER I E EL KK 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 204 KKNI L a EE LSTNKNQ LK QLT E T Y EEDRKN Y S E VQIRCQRLALE L ADTKQL I QQGDY R QENYDKVKSERDA L EQEVI EL RR 283
Cdd:PRK03918 274 EIEE L - EE KVKELKE LK EKA E E Y IKLSEF Y E E YLDELREIEKR L SRLEEE I NGIEE R IKELEEKEERLEE L KKKLK EL EK 352
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 284 KH E I LE AS H MIQTKERSELS ----------- KEVVT LE QTVTL L Q K D KE YLNRQNMELSV R CAHEEDRLER L QAQL EE S K 352
Cdd:PRK03918 353 RL E E LE ER H ELYEEAKAKKE elerlkkrltg LTPEK LE KELEE L E K A KE EIEEEISKITA R IGELKKEIKE L KKAI EE L K 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 353 KA REEMYEKYVASRDHYKT E YENKLHD EL EQ I RLKTNQEIDQL R NASR E MY E R E NRNLR E ARDNAVA E KERAVMAEKDA L 432
Cdd:PRK03918 433 KA KGKCPVCGRELTEEHRK E LLEEYTA EL KR I EKELKEIEEKE R KLRK E LR E L E KVLKK E SELIKLK E LAEQLKELEEK L 512
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 433 E K HD - QL L DRYR E LQLSTES K VTEFLHQS K LKSF E S E RVQL L QEE tarn L TQCQLECEKYQKK L EV L T KE FYS L QAS S -- 509
Cdd:PRK03918 513 K K YN l EE L EKKA E EYEKLKE K LIKLKGEI K SLKK E L E KLEE L KKK ---- L AELEKKLDELEEE L AE L L KE LEE L GFE S ve 588
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 55769583 510 -- E K R IT EL Q -------- AQNS E H -- QARLDIYE KLE K ELD EIIMQT AE I E NED E 552
Cdd:PRK03918 589 el E E R LK EL E pfyneyle LKDA E K el EREEKELK KLE E ELD KAFEEL AE T E KRL E 643
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
474-687
5.27e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 43.21
E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 474 QE E TARN L T Q C Q L E CEKYQ K K L EV L T KE FYS L Q --- A SS E K RI TE L QAQNSEHQAR L diy EK LE K EL D E IIMQT AE IEN E 550
Cdd:COG4942 22 AA E AEAE L E Q L Q Q E IAELE K E L AA L K KE EKA L L kql A AL E R RI AA L ARRIRALEQE L --- AA LE A EL A E LEKEI AE LRA E 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 551 D E ------ AE RVLFS Y GY G ANV P TTAKRRLKQSVHLA RR VLQ L EKQN slilkdl EH R KD Q VTQ L SQE L DRANS L LNQTQQ 624
Cdd:COG4942 99 L E aqkeel AE LLRAL Y RL G RQP P LALLLSPEDFLDAV RR LQY L KYLA ------- PA R RE Q AEE L RAD L AELAA L RAELEA 171
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55769583 625 PYRY L IESVRQRDSKIDS L TESI A QLE K DVSN L N KE KSA L --- L QTKN Q M A LD LE Q L LNHR E EL AA 687
Cdd:COG4942 172 ERAE L EALLAELEEERAA L EALK A ERQ K LLAR L E KE LAE L aae L AELQ Q E A EE LE A L IARL E AE AA 237
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
63-692
6.41e-04
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 43.18
E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 63 LKIE L S Q KTMM I DN L KVDYLTK I EE L E EK LND A LH Q KQ lltl RLDN QL AFQ Q KD A SKYQELMKQEME tillrqk Q LE E T N 142
Cdd:pfam15921 258 IELL L Q Q HQDR I EQ L ISEHEVE I TG L T EK ASS A RS Q AN ---- SIQS QL EII Q EQ A RNQNSMYMRQLS ------- D LE S T V 326
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 143 L QLR EKAGDVR R NLR D - F E LT E E Q YIKLKAFPEDQLSIPEYV S VRFYE L VNP L R K EICE L QVKK nila E ELS TN K N Q L K Q 221
Cdd:pfam15921 327 S QLR SELREAK R MYE D k I E EL E K Q LVLANSELTEARTERDQF S QESGN L DDQ L Q K LLAD L HKRE ---- K ELS LE K E Q N K R 402
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 222 L tet YEE D RK N ysev Q I RCQR L AL EL A D TKQLI Q Q gdy RQENYDKV KSE - RDAL E QEVIELRR K H E I LE ashmiqtkers 300
Cdd:pfam15921 403 L --- WDR D TG N ---- S I TIDH L RR EL D D RNMEV Q R --- LEALLKAM KSE c QGQM E RQMAAIQG K N E S LE ----------- 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 301 EL S KEVVT LE Q T VTL L Q K DK E Y L NRQN M E L S vrca HE E DRLER L Q A Q L E E SKK A R E emyekyvasrdhykteyenklhde 380
Cdd:pfam15921 462 KV S SLTAQ LE S T KEM L R K VV E E L TAKK M T L E ---- SS E RTVSD L T A S L Q E KER A I E ------------------------ 513
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 381 leqirl K TN Q EI DQ LR n ASREMYER E NRN L REAR D NA vaeke R A V MA E KD AL E khdqlldryre LQ LSTES KV T E F L H Q s 460
Cdd:pfam15921 514 ------ A TN A EI TK LR - SRVDLKLQ E LQH L KNEG D HL ----- R N V QT E CE AL K ----------- LQ MAEKD KV I E I L R Q - 569
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 461 KLKSFESERV Q LLQEET A RNLTQC QLE C E KYQKK LE V lt K EF YS L QASSEKR I T EL Q A QN S EHQ ----------- A RL DI 529
Cdd:pfam15921 570 QIENMTQLVG Q HGRTAG A MQVEKA QLE K E INDRR LE L -- Q EF KI L KDKKDAK I R EL E A RV S DLE lekvklvnags E RL RA 647
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 530 YEKLEK E L D EIIMQTAEIE NE ----- DEA E RVLFSYGYGANVPT T AKRR LK QSVHL A RRV L Q lek Q NSLI LK DL E HRKDQ 604
Cdd:pfam15921 648 VKDIKQ E R D QLLNEVKTSR NE lnsls EDY E VLKRNFRNKSEEME T TTNK LK MQLKS A QSE L E --- Q TRNT LK SM E GSDGH 724
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 605 VTQLSQELDR ansllnqtqqpyrylie SVRQRDSK ID S L TES I AQ LE KDVS N L NKEK SA L LQT KN QMALD L EQLLNHREE 684
Cdd:pfam15921 725 AMKVAMGMQK ----------------- QITAKRGQ ID A L QSK I QF LE EAMT N A NKEK HF L KEE KN KLSQE L STVATEKNK 787
....*...
gi 55769583 685 L A AMKQI L 692
Cdd:pfam15921 788 M A GELEV L 795
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
261-652
6.95e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.12
E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 261 Q EN Y D KVKSERDA LE QEVIE L R R KH E IL E ASHMIQTKE R s EL SKEVVT L E qt VTL L QKDK E Y L NRQNM E LSVRCAHEEDR 340
Cdd:TIGR02168 185 R EN L D RLEDILNE LE RQLKS L E R QA E KA E RYKELKAEL R - EL ELALLV L R -- LEE L REEL E E L QEELK E AEEELEELTAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 341 L ER L QAQ LEE SKKARE E MY E KY vasr DHYKT E YEN -- KLHDE LEQ IRLKTNQEIDQ L RN a SR E MY E RENRN L REAR D NAV 418
Cdd:TIGR02168 262 L QE L EEK LEE LRLEVS E LE E EI ---- EELQK E LYA la NEISR LEQ QKQILRERLAN L ER - QL E EL E AQLEE L ESKL D ELA 336
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 419 A E KERAVMAEKDAL E KHDQ L --- L DRYRELQLST ES KVT E F lh QSK L KSFE S ERV QL LQEETAR N LTQCQ LE cekyqkkl 495
Cdd:TIGR02168 337 E E LAELEEKLEELK E ELES L eae L EELEAELEEL ES RLE E L -- EEQ L ETLR S KVA QL ELQIASL N NEIER LE -------- 406
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 496 evltkefy SLQASS E K R ITE LQ AQNS E HQAR L D iyekl E K EL D E IIMQTA E I E N E D E aervlfsygyganvpttakrrlk 575
Cdd:TIGR02168 407 -------- ARLERL E D R RER LQ QEIE E LLKK L E ----- E A EL K E LQAELE E L E E E L E ----------------------- 450
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 55769583 576 qsvhlarrvl Q L EKQNSLILKD LE HRKDQVTQLS Q E LD R A NSL L N Q T Q Q pyry LIE S VRQRDSKIDSLT E SIAQ L E K 652
Cdd:TIGR02168 451 ---------- E L QEELERLEEA LE ELREELEEAE Q A LD A A ERE L A Q L Q A ---- RLD S LERLQENLEGFS E GVKA L L K 513
GumC
COG3206 Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
261-456
9.86e-04
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain]
Cd Length: 687
Bit Score: 42.70
E-value: 9.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 261 Q E NYDKVKS E RDAL E QEVI E L R R K HEILEA S HMIQ -- TKER SEL SKEVVTLEQTVTLLQKDKEY L NR Q -- NMELSVRCAH 336
Cdd:COG3206 181 E E QLPELRK E LEEA E AALE E F R Q K NGLVDL S EEAK ll LQQL SEL ESQLAEARAELAEAEARLAA L RA Q lg SGPDALPELL 260
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 337 EEDRLER L Q AQL E E SKKARE E MYEK Y ------ V ASRDHYKTEYENK L HD E LEQ I RLKTNQ E IDQ L RNASREMYERENRNL 410
Cdd:COG3206 261 QSPVIQQ L R AQL A E LEAELA E LSAR Y tpnhpd V IALRAQIAALRAQ L QQ E AQR I LASLEA E LEA L QAREASLQAQLAQLE 340
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 55769583 411 REARDNAVA E K E - R AVMA E KDALEK - HDQ LL D R YR E LQ L STESK V TEF 456
Cdd:COG3206 341 ARLAELPEL E A E l R RLER E VEVARE l YES LL Q R LE E AR L AEALT V GNV 388
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
214-459
9.93e-04
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 42.59
E-value: 9.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 214 T N KNQ L KQ L TETYE E DRKNYS E VQI R CQR L AL EL ADTKQLIQQGD y R QEN Y DKVKSERDAL E Q E VI EL RRKH E I L E AS hm 293
Cdd:COG4913 607 D N RAK L AA L EAELA E LEEELA E AEE R LEA L EA EL DALQERREALQ - R LAE Y SWDEIDVASA E R E IA EL EAEL E R L D AS -- 683
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 294 iqtkersel S KEVVT LE QTVTL L QKDK E Y L NRQNM EL SVRCAHE E DR LE RLQAQ L E E SKKAR E EMYE kyv AS R DHYKTEY 373
Cdd:COG4913 684 --------- S DDLAA LE EQLEE L EAEL E E L EEELD EL KGEIGRL E KE LE QAEEE L D E LQDRL E AAED --- LA R LELRALL 751
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 374 E NKLHDE L - EQIRLKTNQEIDQLRN A S R EMYE R ENRN L RE A R ------- DNAV A EKERAVMAEKDA L EKH D Q L ---- L DR 441
Cdd:COG4913 752 E ERFAAA L g DAVERELRENLEERID A L R ARLN R AEEE L ER A M rafnrew PAET A DLDADLESLPEY L ALL D R L eedg L PE 831
250 260
....*....|....*....|...
gi 55769583 442 Y R E ----- L QLSTESK V TEF L HQ 459
Cdd:COG4913 832 Y E E rfkel L NENSIEF V ADL L SK 854
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
19-284
1.76e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 41.97
E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 19 E S E DI S LETTVPTD D ISSS E EREGKV -- RI TRQLI E RK EL LHN I QL L KIE L SQKTMMIDNLKV dylt K IEELE EKLNDAL 96
Cdd:TIGR02168 720 E L E EL S RQISALRK D LARL E AEVEQL ee RI AQLSK E LT EL EAE I EE L EER L EEAEEELAEAEA ---- E IEELE AQIEQLK 795
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 97 HQKQL L TLR LD --- NQ L AFQQKD A SKYQ E LMKQEMET I LLRQKQ LE ETNL Q LR E KAG D VRRNLRDF E LT EE QYIK L kafp 173
Cdd:TIGR02168 796 EELKA L REA LD elr AE L TLLNEE A ANLR E RLESLERR I AATERR LE DLEE Q IE E LSE D IESLAAEI E EL EE LIEE L ---- 871
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 174 E DQ L SIPEYVSVRFY E LVNP LR K E IC EL QVKKNI L AEEL S TNKNQ L KQ L T E TYEEDRKNYSEVQI R CQR L ALE L ADTKQ L 253
Cdd:TIGR02168 872 E SE L EALLNERASLE E ALAL LR S E LE EL SEELRE L ESKR S ELRRE L EE L R E KLAQLELRLEGLEV R IDN L QER L SEEYS L 951
250 260 270
....*....|....*....|....*....|.
gi 55769583 254 IQQGD yr QENYD K VKSERDALEQEVIE L RR K 284
Cdd:TIGR02168 952 TLEEA -- EALEN K IEDDEEEARRRLKR L EN K 980
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
261-446
2.31e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 41.44
E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 261 Q E NYDKVKSERDA LE Q e VI EL RRKHEILEASHMIQTKE R SE L ----- SKEVVT LE QTVTL L QKDKEY L NRQNME L SV R CA 335
Cdd:COG4913 241 H E ALEDAREQIEL LE P - IR EL AERYAAARERLAELEYL R AA L rlwfa QRRLEL LE AELEE L RAELAR L EAELER L EA R LD 319
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 336 HEEDR L ER L Q AQ LEESKKA R E E MY E KYVASR dhykteye NKLHD E L E QI R LKTNQEIDQ L R --- N AS R E MYERENRNLRE 412
Cdd:COG4913 320 ALREE L DE L E AQ IRGNGGD R L E QL E REIERL -------- ERELE E R E RR R ARLEALLAA L G lpl P AS A E EFAALRAEAAA 391
170 180 190
....*....|....*....|....*....|....
gi 55769583 413 ARDNAVA E K E RAVM A EKD A LEKHDQ L LDRY REL Q 446
Cdd:COG4913 392 LLEALEE E L E ALEE A LAE A EAALRD L RREL REL E 425
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
262-650
2.32e-03
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 41.59
E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 262 EN YDKVKSER D ALE Q EVIE LRR KH E IL E ashmiqtk ERSE L S KE VVTL E QTVT L LQ K DKEYLNRQNM E lsvrca HEEDR L 341
Cdd:TIGR02169 184 EN IERLDLII D EKR Q QLER LRR ER E KA E -------- RYQA L L KE KREY E GYEL L KE K EALERQKEAI E ------ RQLAS L 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 342 E RLQAQ L E E SKKAR E EMY E KYVASRDHYKTEYENKLHD E LEQIR --- LKTNQ EI DQ L RNASR E m Y ERE NRNLR E ARDNAV 418
Cdd:TIGR02169 250 E EELEK L T E EISEL E KRL E EIEQLLEELNKKIKDLGEE E QLRVK eki GELEA EI AS L ERSIA E - K ERE LEDAE E RLAKLE 328
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 419 AE KERA vmaekda L EKHDQ L LDRYR E LQLSTESKVT E F lhq SK LK SFESERVQL L Q E ETARNLTQCQ l E CEK Y QK KLE V L 498
Cdd:TIGR02169 329 AE IDKL ------- L AEIEE L EREIE E ERKRRDKLTE E Y --- AE LK EELEDLRAE L E E VDKEFAETRD - E LKD Y RE KLE K L 397
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 499 TK E FYS L QASSEKRIT ELQ aqn SEHQARL D IYEKLEKELDE I IMQTA E I E NEDEAER vlfsygyganvpt TAKRR L K Q sv 578
Cdd:TIGR02169 398 KR E INE L KRELDRLQE ELQ --- RLSEELA D LNAAIAGIEAK I NELEE E K E DKALEIK ------------- KQEWK L E Q -- 459
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55769583 579 h LA RRVLQL E KQNSLILKDLEHRKDQVTQ L SQ EL DR A NSLLNQTQQPY R YLIESVRQRDSK I DSLTESI AQL 650
Cdd:TIGR02169 460 - LA ADLSKY E QELYDLKEEYDRVEKELSK L QR EL AE A EAQARASEERV R GGRAVEEVLKAS I QGVHGTV AQL 530
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
209-417
3.57e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.52
E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 209 A EELSTNKNQ L K QL TETYE E DR K NYSEVQIRCQR L ALE LA DTKQL I QQ gdy RQENYDKVKS E RD ALE Q E VI EL RRKHEI L 288
Cdd:COG4942 19 A DAAAEAEAE L E QL QQEIA E LE K ELAALKKEEKA L LKQ LA ALERR I AA --- LARRIRALEQ E LA ALE A E LA EL EKEIAE L 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 289 E A SHMI Q TK E RS EL SKEVVT L EQT ---- VT L LQK D K ---------- E YL NRQNM E LSVRCAHEEDR L ER L Q A Q LE ESKKA 354
Cdd:COG4942 96 R A ELEA Q KE E LA EL LRALYR L GRQ ppla LL L SPE D F ldavrrlqyl K YL APARR E QAEELRADLAE L AA L R A E LE AERAE 175
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 55769583 355 R E EMYEKYVAS R DHYKTEYE -- N KL HDE LE QIRLKTNQ E IDQ L RNASR E MYEREN R NLR EA RDN A 417
Cdd:COG4942 176 L E ALLAELEEE R AALEALKA er Q KL LAR LE KELAELAA E LAE L QQEAE E LEALIA R LEA EA AAA A 240
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
74-292
5.00e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 40.28
E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 74 I D N L k V DYLTKI E ELE E K L N DA LH Q KQ LL TLRLDNQLAFQQK -- DASKYQE L MK ----- QEMETIL L RQKQ LEE TNLQ L R 146
Cdd:COG4913 227 A D A L - V EHFDDL E RAH E A L E DA RE Q IE LL EPIRELAERYAAA re RLAELEY L RA alrlw FAQRRLE L LEAE LEE LRAE L A 305
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 147 EKAGDVR R NLRDFELTE E QYIK L K A fpe DQLSIP eyvsvrf YELVNP L RK EI CE L QVKKNILAEELSTNKNQ L KQ L TETY 226
Cdd:COG4913 306 RLEAELE R LEARLDALR E ELDE L E A --- QIRGNG ------- GDRLEQ L ER EI ER L ERELEERERRRARLEAL L AA L GLPL 375
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 55769583 227 EEDRKNYSEVQIRCQR L ALE L ADTKQLIQQ gdyrqe NYDKVKSERDA L EQ E VI EL RRKHEI LE ASH 292
Cdd:COG4913 376 PASAEEFAALRAEAAA L LEA L EEELEALEE ------ ALAEAEAALRD L RR E LR EL EAEIAS LE RRK 435
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
390-670
5.46e-03
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 40.49
E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 390 QE IDQL R N A SREMYE RE NR --- N LR EARD N A V A E K E R A VMAEK D A LE KHDQLLDRY R ELQ LS T E SKVT E F lh Q S K L KS FE 466
Cdd:pfam15921 120 QE MQME R D A MADIRR RE SQ sqe D LR NQLQ N T V H E L E A A KCLKE D M LE DSNTQIEQL R KMM LS H E GVLQ E I -- R S I L VD FE 197
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 467 SERVQLLQ E ETARNLTQCQLECEKYQ K K L EV L TK E FYS L QASSEKRITE L Q A QN SE H Q ARLDIYEKLEKELD E IIMQTA E 546
Cdd:pfam15921 198 EASGKKIY E HDSMSTMHFRSLGSAIS K I L RE L DT E ISY L KGRIFPVEDQ L E A LK SE S Q NKIELLLQQHQDRI E QLISEH E 277
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 547 I E NEDEA E R vlfsygyganvp TTAK R RLKQ S VHLARRVL Q LE -- K QNS LILKD L EHRKDQ V T QL SQ EL -------- D RAN 616
Cdd:pfam15921 278 V E ITGLT E K ------------ ASSA R SQAN S IQSQLEII Q EQ ar N QNS MYMRQ L SDLEST V S QL RS EL reakrmye D KIE 345
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 55769583 617 S L LN Q TQQPYRY L I E SVRQ RD SKIDSLTESIA QL E K DVSN L N K EKSA L LQT K N Q 670
Cdd:pfam15921 346 E L EK Q LVLANSE L T E ARTE RD QFSQESGNLDD QL Q K LLAD L H K REKE L SLE K E Q 399
DUF5401
pfam17380 Family of unknown function (DUF5401); This is a family of unknown function found in ...
206-553
6.97e-03
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain]
Cd Length: 722
Bit Score: 39.72
E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 206 N I LAEELSTNKN Q LKQLT E TY E ED R knyse VQIRCQRL A L E LADTKQ L IQQGDY RQ ENY D KVKSER da L EQE VIELR R KH 285
Cdd:pfam17380 276 H I VQHQKAVSER Q QQEKF E KM E QE R ----- LRQEKEEK A R E VERRRK L EEAEKA RQ AEM D RQAAIY -- A EQE RMAME R ER 348
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 286 E ILEASHMIQTK E RSELSK E VVTL E ---- QTVTL LQ KDKEYL N --- RQ NM E LSVRCA - H EE D R LERL Q A Q LE E SKKA R E E 357
Cdd:pfam17380 349 E LERIRQEERKR E LERIRQ E EIAM E isrm RELER LQ MERQQK N erv RQ EL E AARKVK i L EE E R QRKI Q Q Q KV E MEQI R A E 428
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 358 MY E kyva S R DHYKTEY E NKLHD E L E QI R --- LKTN Q EIDQ LR NASR E MYERENRNLR E A RD NAV AE KE R AVMA EK DAL E K 434
Cdd:pfam17380 429 QE E ---- A R QREVRRL E EERAR E M E RV R lee QERQ Q QVER LR QQEE E RKRKKLELEK E K RD RKR AE EQ R RKIL EK ELE E R 504
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 435 HDQLLDRY R ELQ L steskvteflhqsk L KSFES ER VQLLQ EE TA R NLTQ cql E CEKY Q KKL E vltkefyslqas SEK RI T 514
Cdd:pfam17380 505 KQAMIEEE R KRK L -------------- L EKEME ER QKAIY EE ER R REAE --- E ERRK Q QEM E ------------ ERR RI Q 555
330 340 350
....*....|....*....|....*....|....*....
gi 55769583 515 E LQAQNS E HQA RL DIY E K l E K E LDEI I MQTAEIEN E D EA 553
Cdd:pfam17380 556 E QMRKAT E ERS RL EAM E R - E R E MMRQ I VESEKARA E Y EA 593
PTZ00121
PTZ00121 MAEBL; Provisional
209-551
7.48e-03
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 40.12
E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 209 AEE LSTNKNQL K QLT E TYE -- E DR K NYS E VQIRCQR l A LEL AD TKQLIQQGDYRQENYD K VKSERD A L E QEVI E LRR K HE 286
Cdd:PTZ00121 1459 AEE AKKKAEEA K KAD E AKK ka E EA K KAD E AKKKAEE - A KKK AD EAKKAAEAKKKADEAK K AEEAKK A D E AKKA E EAK K AD 1537
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 287 ILEASHMIQTKERSELSK E VVTL E QTVTLLQKD K EYLNRQNMELSVRC A H -- EE D R L E RLQAQL EE S KK ARE E MYE K yv A 364
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAE E LKKA E EKKKAEEAK K AEEDKNMALRKAEE A K ka EE A R I E EVMKLY EE E KK MKA E EAK K -- A 1615
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 365 SRDHY K T E YEN K LHD E LEQIRLKTNQ E IDQLRN A SREMYER E NRNLRE A RDNAV AE KERAVMA E KDAL E KHDQLLDRYRE 444
Cdd:PTZ00121 1616 EEAKI K A E ELK K AEE E KKKVEQLKKK E AEEKKK A EELKKAE E ENKIKA A EEAKK AE EDKKKAE E AKKA E EDEKKAAEALK 1695
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55769583 445 LQLSTES K VT E FLHQSKLKSFES E RVQLLQ EE TARNLTQCQL E C E KYQ KK L E VLT K EFYSLQASSEKRIT E LQAQNSEHQ 524
Cdd:PTZ00121 1696 KEAEEAK K AE E LKKKEAEEKKKA E ELKKAE EE NKIKAEEAKK E A E EDK KK A E EAK K DEEEKKKIAHLKKE E EKKAEEIRK 1775
330 340
....*....|....*....|....*..
gi 55769583 525 ARLDIY E KLEK E L DE IIMQTAEIENE D 551
Cdd:PTZ00121 1776 EKEAVI E EELD E E DE KRRMEVDKKIK D 1802
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
