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Conserved domains on  [gi|109638749|ref|NP_008878|]
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signal recognition particle subunit SRP72 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP72 pfam08492
SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 ...
 532-584 2.24e-17

SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 protein to SRP RNA.


:

Pssm-ID: 462494  Cd Length: 53  Bit Score: 76.25  E-value: 2.24e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 109638749  532 KKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584
Cdd:pfam08492   1 KKKSKVSPSTPPKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-502 1.73e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.22  E-value: 1.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 180 YNTACALIGQGQLNQAMKILQKAEdlcrrslsedtdgtEEDPQAELAiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEAL--------------ELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 260 VGLLAVIANniitINKDQNVFDskkkvkltnaegvefklskkqlQAIEFNKALLAMYTNQAEqcrkisaslqsqspehll 339
Cdd:COG2956   76 AEALLELAQ----DYLKAGLLD----------------------RAEELLEKLLELDPDDAE------------------ 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 340 pVLIQAAQLC-REKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKAcliLRSIEE-LKHKPGMVSALVTM-- 415
Cdd:COG2956  112 -ALRLLAEIYeQEGDWEKAIEVLERLLKLGPEN-AHAYCELAELYLEQGDYDEA---IEALEKaLKLDPDCARALLLLae 186

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 416 -YSHEEDIDSAIEVFTQAIQwyqnhqpKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLV 494
Cdd:COG2956  187 lYLEQGDYEEAIAALERALE-------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259


                 ....*...
gi 109638749 495 DPEKAKAL 502
Cdd:COG2956  260 GLEAALAL 267
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-322 1.09e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  21 YGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEAlnvINTHTKVLANNslsfekayceyrlnrienalkt 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRA---IRIHQKLLERD---------------------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 101 iesaNQQTDKLKELyGQVLYRLERYDECLAVYRDLVrnSQDDYDEERKTNLSAVVAAQSNWEK---VVPENLGLQEGTHE 177
Cdd:COG2956   73 ----PDRAEALLEL-AQDYLKAGLLDRAEELLEKLL--ELDPDDAEALRLLAEIYEQEGDWEKaieVLERLLKLGPENAH 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 178 LCYNTACALIGQGQLNQAMKILQKAedlcrrslsedtdgTEEDPQAELAIIhgQMAYILQLQGRTEEALQLYNQIIKLKP 257
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKA--------------LKLDPDCARALL--LLAELYLEQGDYEEAIAALERALEQDP 209

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109638749 258 TDVGLLAVIANNIITINKDQNVFDS-KKKVKLTNAEGVEFKLSkKQLQAIEFNKALLAMYTNQAEQ 322
Cdd:COG2956  210 DYLPALPRLAELYEKLGDPEEALELlRKALELDPSDDLLLALA-DLLERKEGLEAALALLERQLRR 274
 
Name Accession Description Interval E-value
SRP72 pfam08492
SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 ...
 532-584 2.24e-17

SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 protein to SRP RNA.


Pssm-ID: 462494  Cd Length: 53  Bit Score: 76.25  E-value: 2.24e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 109638749  532 KKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584
Cdd:pfam08492   1 KKKSKVSPSTPPKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-502 1.73e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.22  E-value: 1.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 180 YNTACALIGQGQLNQAMKILQKAEdlcrrslsedtdgtEEDPQAELAiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEAL--------------ELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 260 VGLLAVIANniitINKDQNVFDskkkvkltnaegvefklskkqlQAIEFNKALLAMYTNQAEqcrkisaslqsqspehll 339
Cdd:COG2956   76 AEALLELAQ----DYLKAGLLD----------------------RAEELLEKLLELDPDDAE------------------ 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 340 pVLIQAAQLC-REKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKAcliLRSIEE-LKHKPGMVSALVTM-- 415
Cdd:COG2956  112 -ALRLLAEIYeQEGDWEKAIEVLERLLKLGPEN-AHAYCELAELYLEQGDYDEA---IEALEKaLKLDPDCARALLLLae 186

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 416 -YSHEEDIDSAIEVFTQAIQwyqnhqpKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLV 494
Cdd:COG2956  187 lYLEQGDYEEAIAALERALE-------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259


                 ....*...
gi 109638749 495 DPEKAKAL 502
Cdd:COG2956  260 GLEAALAL 267
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 233-503 5.82e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.88  E-value: 5.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  233 AYILQLQGRTEEALQLYNQIIKLKPTDVGLLAvianNIITINKDQNVFDSKKKvkltNAEGVeFKLSKKQLQAiEFNKAL 312
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLL----ALATILIEAGEFEEAEK----HADAL-LKKAPNSPLA-HYLKAL 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  313 LAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKA 392
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS-HQARRLLASIQLRLGRVDEA 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  393 CLILRSIEEL-KHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQwyqnHQPKSPAHLSlirEAANFKLKYGRKKEAISDLQ 471
Cdd:TIGR02917 349 IATLSPALGLdPDDPAALSLLGEAYLALGDFEKAAEYLAKATE----LDPENAAART---QLGISKLSQGDPSEAIADLE 421

                         250       260       270
                  ....*....|....*....|....*....|..
gi 109638749  472 QLWKQNPKDIHTLAQLISAYsLVDPEKAKALS 503
Cdd:TIGR02917 422 TAAQLDPELGRADLLLILSY-LRSGQFDKALA 452
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-322 1.09e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  21 YGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEAlnvINTHTKVLANNslsfekayceyrlnrienalkt 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRA---IRIHQKLLERD---------------------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 101 iesaNQQTDKLKELyGQVLYRLERYDECLAVYRDLVrnSQDDYDEERKTNLSAVVAAQSNWEK---VVPENLGLQEGTHE 177
Cdd:COG2956   73 ----PDRAEALLEL-AQDYLKAGLLDRAEELLEKLL--ELDPDDAEALRLLAEIYEQEGDWEKaieVLERLLKLGPENAH 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 178 LCYNTACALIGQGQLNQAMKILQKAedlcrrslsedtdgTEEDPQAELAIIhgQMAYILQLQGRTEEALQLYNQIIKLKP 257
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKA--------------LKLDPDCARALL--LLAELYLEQGDYEEAIAALERALEQDP 209

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109638749 258 TDVGLLAVIANNIITINKDQNVFDS-KKKVKLTNAEGVEFKLSkKQLQAIEFNKALLAMYTNQAEQ 322
Cdd:COG2956  210 DYLPALPRLAELYEKLGDPEEALELlRKALELDPSDDLLLALA-DLLERKEGLEAALALLERQLRR 274
SRP_TPR_like pfam17004
Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold ...
 51-154 1.52e-09

Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold into a TPR-like structure. Many sequences are annotated as being signal recognition proteins.


Pssm-ID: 435703 [Multi-domain]  Cd Length: 109  Bit Score: 55.86  E-value: 1.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749   51 KVVCLIQNGSFKEALnvinthtKVLANNSlsFEKAYCEYRLNRIENALKTIESANqqTDKLKELYGQVLYRLERYDEcla 130
Cdd:pfam17004  20 KVIALIHLDKYKEAL-------KYAKKGS--FEKAYALYKLKKYKKALKILRKMD--SEGSRVLASQCLYFLGYYNK--- 85

                          90       100
                  ....*....|....*....|....
gi 109638749  131 VYRDLvrnSQDDYDEERKTNLSAV 154
Cdd:pfam17004  86 AYKIL---SECKRDDEIVVNLQAM 106
TPR_12 pfam13424
Tetratricopeptide repeat;
185-255 4.18e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 4.18e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109638749  185 ALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTeedpqaelAIIHGQMAYILQLQGRTEEALQLYNQIIKL 255
Cdd:pfam13424  12 VLRRLGRYDEALELLEKALEIARRLLGPDHPLT--------ATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 353-510 1.02e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 42.38  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  353 QHTKAIELLQEFSDQHPENAAeIKLTMAQLKISQGNISKACLILRSI---------------EELKHKP---GMVSAL-- 412
Cdd:PRK11447  162 QRPEAINQLQRLNADYPGNTG-LRNTLALLLFSSGRRDEGFAVLEQMakspagrdaaaqlwyGQIKDMPvsdASVAALqk 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  413 -VTMYSHEEDIDSAIEVFTQaiqwyQNHQPKSPAHLSLIREAAnfKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAY 491
Cdd:PRK11447  241 yLQVFSDGDSVAAARSQLAE-----QQKQLADPAFRARAQGLA--AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313

                         170       180
                  ....*....|....*....|....*..
gi 109638749  492 S--------LVDPEKAKALSKHLPSSD 510
Cdd:PRK11447  314 SqqgdraraVAQFEKALALDPHSSNRD 340
 
Name Accession Description Interval E-value
SRP72 pfam08492
SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 ...
 532-584 2.24e-17

SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 protein to SRP RNA.


Pssm-ID: 462494  Cd Length: 53  Bit Score: 76.25  E-value: 2.24e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 109638749  532 KKGGKVTGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584
Cdd:pfam08492   1 KKKSKVSPSTPPKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-502 1.73e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.22  E-value: 1.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 180 YNTACALIGQGQLNQAMKILQKAEdlcrrslsedtdgtEEDPQAELAiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEAL--------------ELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 260 VGLLAVIANniitINKDQNVFDskkkvkltnaegvefklskkqlQAIEFNKALLAMYTNQAEqcrkisaslqsqspehll 339
Cdd:COG2956   76 AEALLELAQ----DYLKAGLLD----------------------RAEELLEKLLELDPDDAE------------------ 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 340 pVLIQAAQLC-REKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKAcliLRSIEE-LKHKPGMVSALVTM-- 415
Cdd:COG2956  112 -ALRLLAEIYeQEGDWEKAIEVLERLLKLGPEN-AHAYCELAELYLEQGDYDEA---IEALEKaLKLDPDCARALLLLae 186

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 416 -YSHEEDIDSAIEVFTQAIQwyqnhqpKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLV 494
Cdd:COG2956  187 lYLEQGDYEEAIAALERALE-------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259


                 ....*...
gi 109638749 495 DPEKAKAL 502
Cdd:COG2956  260 GLEAALAL 267
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 233-503 5.82e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.88  E-value: 5.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  233 AYILQLQGRTEEALQLYNQIIKLKPTDVGLLAvianNIITINKDQNVFDSKKKvkltNAEGVeFKLSKKQLQAiEFNKAL 312
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLL----ALATILIEAGEFEEAEK----HADAL-LKKAPNSPLA-HYLKAL 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  313 LAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKA 392
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS-HQARRLLASIQLRLGRVDEA 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  393 CLILRSIEEL-KHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQwyqnHQPKSPAHLSlirEAANFKLKYGRKKEAISDLQ 471
Cdd:TIGR02917 349 IATLSPALGLdPDDPAALSLLGEAYLALGDFEKAAEYLAKATE----LDPENAAART---QLGISKLSQGDPSEAIADLE 421

                         250       260       270
                  ....*....|....*....|....*....|..
gi 109638749  472 QLWKQNPKDIHTLAQLISAYsLVDPEKAKALS 503
Cdd:TIGR02917 422 TAAQLDPELGRADLLLILSY-LRSGQFDKALA 452
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-322 1.09e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  21 YGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEAlnvINTHTKVLANNslsfekayceyrlnrienalkt 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRA---IRIHQKLLERD---------------------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 101 iesaNQQTDKLKELyGQVLYRLERYDECLAVYRDLVrnSQDDYDEERKTNLSAVVAAQSNWEK---VVPENLGLQEGTHE 177
Cdd:COG2956   73 ----PDRAEALLEL-AQDYLKAGLLDRAEELLEKLL--ELDPDDAEALRLLAEIYEQEGDWEKaieVLERLLKLGPENAH 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 178 LCYNTACALIGQGQLNQAMKILQKAedlcrrslsedtdgTEEDPQAELAIIhgQMAYILQLQGRTEEALQLYNQIIKLKP 257
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKA--------------LKLDPDCARALL--LLAELYLEQGDYEEAIAALERALEQDP 209

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109638749 258 TDVGLLAVIANNIITINKDQNVFDS-KKKVKLTNAEGVEFKLSkKQLQAIEFNKALLAMYTNQAEQ 322
Cdd:COG2956  210 DYLPALPRLAELYEKLGDPEEALELlRKALELDPSDDLLLALA-DLLERKEGLEAALALLERQLRR 274
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 23-504 7.75e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 7.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749   23 QNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNSLSFEKAYCEY-RLNRIENALKTI 101
Cdd:TIGR02917 307 QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYlALGDFEKAAEYL 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  102 ESANQQTDKLKELYGQV-LYRLERYDECLAVyRDLVRNSQDDYDEE-----------RKTNLSAVVAAQSNWEKVVPENl 169
Cdd:TIGR02917 387 AKATELDPENAAARTQLgISKLSQGDPSEAI-ADLETAAQLDPELGradlllilsylRSGQFDKALAAAKKLEKKQPDN- 464

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  170 glqegthELCYNT-ACALIGQGQLNQAMKILQKAEDLCRRSLSE-----DTDGTEEDP-------QAELAIIHGQMAYIL 236
Cdd:TIGR02917 465 -------ASLHNLlGAIYLGKGDLAKAREAFEKALSIEPDFFPAaanlaRIDIQEGNPddaiqrfEKVLTIDPKNLRAIL 537

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  237 QL------QGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINkdqnvfDSKKKVKLTNAEGvefKLSKKQLQAIEFnK 310
Cdd:TIGR02917 538 ALaglylrTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG------QLKKALAILNEAA---DAAPDSPEAWLM-L 607

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  311 ALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNIS 390
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-TEAQIGLAQLLLAAKRTE 686

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  391 KACLILRSIEELKHKPGMVSALvtmyshEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAAnFKLKYGRKKEAISDL 470
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAALGFEL------EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR-ALLASGNTAEAVKTL 759

                         490       500       510
                  ....*....|....*....|....*....|....
gi 109638749  471 QQLWKQNPKDIHTLAQLISAYsLVDPEKAKALSK 504
Cdd:TIGR02917 760 EAWLKTHPNDAVLRTALAELY-LAQKDYDKAIKH 792
SRP_TPR_like pfam17004
Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold ...
 51-154 1.52e-09

Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold into a TPR-like structure. Many sequences are annotated as being signal recognition proteins.


Pssm-ID: 435703 [Multi-domain]  Cd Length: 109  Bit Score: 55.86  E-value: 1.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749   51 KVVCLIQNGSFKEALnvinthtKVLANNSlsFEKAYCEYRLNRIENALKTIESANqqTDKLKELYGQVLYRLERYDEcla 130
Cdd:pfam17004  20 KVIALIHLDKYKEAL-------KYAKKGS--FEKAYALYKLKKYKKALKILRKMD--SEGSRVLASQCLYFLGYYNK--- 85

                          90       100
                  ....*....|....*....|....
gi 109638749  131 VYRDLvrnSQDDYDEERKTNLSAV 154
Cdd:pfam17004  86 AYKIL---SECKRDDEIVVNLQAM 106
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-503 2.49e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.48  E-value: 2.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749   24 NGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINthtKVLAnnsLSFEKAYCEYRLNRIENALKTIES 103
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR---KAIA---LRPNNIAVLLALATILIEAGEFEE 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  104 ANQQTDKLKELYGQVLyrLERYdeclavYRDLVRNSQDDYDEERKTNLSAVVAAqsnwekvvPENLglqegthELCYNTA 183
Cdd:TIGR02917 246 AEKHADALLKKAPNSP--LAHY------LKALVDFQKKNYEDARETLQDALKSA--------PEYL-------PALLLAG 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  184 CALIGQGQLNQAMKILQKAEDLcrrslsedtdgTEEDPQAELAiihgqMAYILQLQGRTEEALQLYNQIIKLKPTDVGLL 263
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKY-----------APNSHQARRL-----LASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  264 AvIANNIITINKDqnvFDSKKKVkLTNAEGVEFKLSKKQLQaiefnKALLAMYTNQAEQCRK---ISASLQSQSPEHLLP 340
Cdd:TIGR02917 367 S-LLGEAYLALGD---FEKAAEY-LAKATELDPENAAARTQ-----LGISKLSQGDPSEAIAdleTAAQLDPELGRADLL 436

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  341 VLIQAAQLCREKQHTKAIELLQEfsdQHPENAAeIKLTMAQLKISQGNISKACLILRsiEELKHKPGMVSA---LVTMYS 417
Cdd:TIGR02917 437 LILSYLRSGQFDKALAAAKKLEK---KQPDNAS-LHNLLGAIYLGKGDLAKAREAFE--KALSIEPDFFPAaanLARIDI 510

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  418 HEEDIDSAIEVFTQAIQWYqnhqpksPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYsLVDPE 497
Cdd:TIGR02917 511 QEGNPDDAIQRFEKVLTID-------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY-LGKGQ 582


                  ....*.
gi 109638749  498 KAKALS 503
Cdd:TIGR02917 583 LKKALA 588
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 89-259 1.18e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 1.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  89 YRLNRIENALKTIESANQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDDydeerktnlsavvaaqsnwekvv 165
Cdd:COG3914   89 QALGRYEEALALYRRALALNPDNAEALfnlGNLLLALGRLEEALAALRRALALNPDF----------------------- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 166 penlglqegtHELCYNTACALIGQGQLNQAMKILQKAedlcrrslsedtdgTEEDPqaELAIIHGQMAYILQLQGRTEEA 245
Cdd:COG3914  146 ----------AEAYLNLGEALRRLGRLEEAIAALRRA--------------LELDP--DNAEALNNLGNALQDLGRLEEA 199

                        170
                 ....*....|....
gi 109638749 246 LQLYNQIIKLKPTD 259
Cdd:COG3914  200 IAAYRRALELDPDN 213
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 183-482 1.35e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 1.35e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 183 ACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGL 262
Cdd:COG3914   35 AALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 263 LAVIANNIITINKDQnvfdskkkvkltnaegvefklskkqlQAIE-FNKALlamytnqaeqcrkisaslqSQSPEHLLPV 341
Cdd:COG3914  115 LFNLGNLLLALGRLE--------------------------EALAaLRRAL-------------------ALNPDFAEAY 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKACLILRSIEELK-HKPGMVSALVTMYSHEE 420
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRALELDPDN-AEALNNLGNALQDLGRLEEAIAAYRRALELDpDNADAHSNLLFALRQAC 228

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109638749 421 DIDsAIEVFTQAIQWYQNHQ----PKSPAHLSLIREAANFKL--KYGRKKEAISDLQQLWKQNPKDIH 482
Cdd:COG3914  229 DWE-VYDRFEELLAALARGPselsPFALLYLPDDDPAELLALarAWAQLVAAAAAPELPPPPNPRDPD 295
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 338-502 5.08e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 5.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 338 LLPVLI------QAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKACLILRSIEEL-KHKPGMVS 410
Cdd:COG2956    2 LLPVAAalgwyfKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERdPDRAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 411 ALVTMYSHEEDIDSAIEVFTQAIQwyqnhqpKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISA 490
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLE-------LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAEL 153

                        170
                 ....*....|...
gi 109638749 491 YSLV-DPEKAKAL 502
Cdd:COG2956  154 YLEQgDYDEAIEA 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-268 2.34e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.32  E-value: 2.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 116 GQVLYRLERYDECLAVYRDLVRNSQDDYdeERKTNLSAVVAAQSNWEKVVP---ENLGLQEGTHELCYNTACALIGQGQL 192
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALELDPDDA--EALYNLGLAYLRLGRYEEALAdyeQALELDPDDAEALNNLGLALQALGRY 92

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109638749 193 NQAMKILQKAEDLcrrslsedtdgteeDPqaELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIAN 268
Cdd:COG0457   93 EEALEDYDKALEL--------------DP--DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 344-480 2.78e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 2.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 344 QAAQLCREKQHTKAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKACLILRSIEELKHK-PGMVSALVTMYSHEEDI 422
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNP-EAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDY 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 109638749 423 DSAIEVFTQAIQwyqnhqpKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD 480
Cdd:COG4783   89 DEALALLEKALK-------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 303-491 3.29e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 3.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 303 LQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAaEIKLTMAQL 382
Cdd:COG3914   43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNA-EALFNLGNL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 383 KISQGNISKACLILRSIeeLKHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQwyqnHQPKSPAHLSLIreaANFKLK 459
Cdd:COG3914  122 LLALGRLEEALAALRRA--LALNPDFAEAYLNLgeaLRRLGRLEEAIAALRRALE----LDPDNAEALNNL---GNALQD 192

                        170       180       190
                 ....*....|....*....|....*....|..
gi 109638749 460 YGRKKEAISDLQQLWKQNPKDIHTLAQLISAY 491
Cdd:COG3914  193 LGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 83-268 8.47e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.30  E-value: 8.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  83 EKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDECLAVYRDLVRnsqddydeerktnlsavvaaqsnwe 162
Cdd:COG3914   52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALA------------------------- 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 163 kvvpenlgLQEGTHELCYNTACALIGQGQLNQAMKILQKAEDLcrrslsedtdgteedpQAELAIIHGQMAYILQLQGRT 242
Cdd:COG3914  107 --------LNPDNAEALFNLGNLLLALGRLEEALAALRRALAL----------------NPDFAEAYLNLGEALRRLGRL 162

                        170       180
                 ....*....|....*....|....*.
gi 109638749 243 EEALQLYNQIIKLKPTDVGLLAVIAN 268
Cdd:COG3914  163 EEAIAALRRALELDPDNAEALNNLGN 188
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-256 9.79e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 9.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  21 YGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEAlnvINTHTKVLANNSLSFE----KAYCEYRLNRIEN 96
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA---LADYEQALELDPDDAEalnnLGLALQALGRYEE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  97 ALKTIESANQQTDKLKELY---GQVLYRLERYDECLAVYRdlvrnsqddydeerktnlsavvaaqsnwekvvpENLGLQE 173
Cdd:COG0457   95 ALEDYDKALELDPDDAEALynlGLALLELGRYDEAIEAYE---------------------------------RALELDP 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 174 GTHELCYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQII 253
Cdd:COG0457  142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221


                 ...
gi 109638749 254 KLK 256
Cdd:COG0457  222 LLL 224
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-142 1.18e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 1.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  21 YGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNS-LSFEKAYCEYRLNRIENALK 99
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPeARLNLGLALLKAGDYDEALA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 109638749 100 TIESANQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDD 142
Cdd:COG4783   94 LLEKALKLDPEHPEAYlrlARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 115-259 8.85e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 8.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 115 YGQVLYRLERYDECLAVYRDLVRnsQDDYDEERKTNLSAVVAAQSNWEKVVP---ENLGLQEGTHELCYNTACALIGQGQ 191
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALE--LDPDNPEAFALLGEILLQLGDLDEAIVllhEALELDPDEPEARLNLGLALLKAGD 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109638749 192 LNQAMKILQKAEDLcrrslsedtdgTEEDPQAelaiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG4783   88 YDEALALLEKALKL-----------DPEHPEA-----YLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
185-255 4.18e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 4.18e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109638749  185 ALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTeedpqaelAIIHGQMAYILQLQGRTEEALQLYNQIIKL 255
Cdd:pfam13424  12 VLRRLGRYDEALELLEKALEIARRLLGPDHPLT--------ATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 185-439 4.31e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 4.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  185 ALIGQGQLNQAMKILQKAEDLCRRSlsedtdgteedPQAELAIIHGQMAyilqlQGRTEEALQLYNQIIKLKPTDVGLLA 264
Cdd:TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDS-----------PEAWLMLGRAQLA-----AGDLNKAVSSFKKLLALQPDSALALL 639

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  265 VIAnniitinKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIefnKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQ 344
Cdd:TIGR02917 640 LLA-------DAYAVMKNYAKAITSLKRALELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  345 AAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKisQGNISKAcliLRSIEE-LKHKPGMV---SALVTMYSHEE 420
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA--SGNTAEA---VKTLEAwLKTHPNDAvlrTALAELYLAQK 784

                         250
                  ....*....|....*....
gi 109638749  421 DIDSAIEVFTQAIQWYQNH 439
Cdd:TIGR02917 785 DYDKAIKHYQTVVKKAPDN 803
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 10-163 4.45e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 4.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  10 SVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNS-LSFEKAYCE 88
Cdd:COG2956  109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCArALLLLAELY 188

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109638749  89 YRLNRIENALKTIESANQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDDYDeerKTNLSAVVAAQSNWEK 163
Cdd:COG2956  189 LEQGDYEEAIAALERALEQDPDYLPALprlAELYEKLGDPEEALELLRKALELDPSDDL---LLALADLLERKEGLEA 263
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 356-480 4.55e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 4.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 356 KAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKACLILRSIEELKHK-PGMVSALVTMYSHEEDIDSAIEVFTQAIQ 434
Cdd:COG4235    1 EAIARLRQALAANPNDA-EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALA 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 109638749 435 wyqnHQPKSPAHLSLireAANFKLKYGRKKEAISDLQQLWKQNPKD 480
Cdd:COG4235   80 ----LDPDNPEALYL---LGLAAFQQGDYAEAIAAWQKLLALLPAD 118
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
169-268 6.41e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 6.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 169 LGLQEGTHELCYNTACALIGQGQLNQAMKILQKAEDLcrrslsedtdgteeDPqaELAIIHGQMAYILQLQGRTEEALQL 248
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------------DP--DDAEALYNLGLAYLRLGRYEEALAD 64

                         90       100
                 ....*....|....*....|
gi 109638749 249 YNQIIKLKPTDVGLLAVIAN 268
Cdd:COG0457   65 YEQALELDPDDAEALNNLGL 84
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 372-501 7.02e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 7.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 372 AAEIKLTMAQLKISQGNISKACLILRSIeeLKHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQwyqnhqpKSPAHLS 448
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKA--LELDPDNPEAFALLgeiLLQLGDLDEAIVLLHEALE-------LDPDEPE 73

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 109638749 449 LIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLV-DPEKAKA 501
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALgRPDEAIA 127
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
402-522 8.73e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.52  E-value: 8.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 402 LKHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQWyqnhQPKSP-AHLSliREAANFKLkyGRKKEAISDLQQLWKQN 477
Cdd:COG4785  100 LELDPDLAEAYNNRglaYLLLGDYDAALEDFDRALEL----DPDYAyAYLN--RGIALYYL--GRYELAIADLEKALELD 171

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 109638749 478 PKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALE 522
Cdd:COG4785  172 PNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARE 216
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 308-491 1.93e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 1.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 308 FNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLI--QAAQlcREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKIS 385
Cdd:COG3071   20 LLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLaaRAAQ--ALGDYERRDEYLAQALELAPEAELAVLLTRAELLLD 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 386 QGNISKAcliLRSIEELK----HKPGMVSALVTMYSHEEDIDSAIEVFTQAiqwyQNHQPKSPAHLSLIREAANFklkyG 461
Cdd:COG3071   98 QGQAEQA---LATLEALRagapRHPQVLRLLLQAYRQLGDWEELLELLPAL----RKHKALSAEEAQALERRAYL----G 166

                        170       180       190
                 ....*....|....*....|....*....|...
gi 109638749 462 RKKEAISD---LQQLWKQNPKDIHTLAQLISAY 491
Cdd:COG3071  167 LLRQAARDaeaLKALWKALPRAERRDPELAAAY 199
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
348-502 2.71e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 348 LCREKQHTKAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKAcliLRSIEE-LKHKPGMVSALVTM---YSHEEDID 423
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDA-EALYNLGLAYLRLGRYEEA---LADYEQaLELDPDDAEALNNLglaLQALGRYE 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 424 SAIEVFTQAIQwyqnhqpKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAY-SLVDPEKAKAL 502
Cdd:COG0457   94 EALEDYDKALE-------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALeKLGRYEEALEL 166
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
21-111 7.43e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 7.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  21 YGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVinthTKVLANNSLS----FEKAYCEYRLNRIEN 96
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL----EKALKLDPNNaealLNLAELLLELGDYDE 77

                         90
                 ....*....|....*
gi 109638749  97 ALKTIESANQQTDKL 111
Cdd:COG3063   78 ALAYLERALELDPSA 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-473 7.71e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.53  E-value: 7.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 218 EEDPqaELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIAnniitinkdqNVFDSKKKVKltnaegvefk 297
Cdd:COG0457    2 ELDP--DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLG----------LAYLRLGRYE---------- 59

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 298 lskkqlQAIEFNKALLAMYTNQAEQCRKISASLQSQspehllpvliqaaqlcreKQHTKAIELLQEFSDQHPENaAEIKL 377
Cdd:COG0457   60 ------EALADYEQALELDPDDAEALNNLGLALQAL------------------GRYEEALEDYDKALELDPDD-AEALY 114

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 378 TMAQLKISQGNISKACLILRSIEELkhKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAA 454
Cdd:COG0457  115 NLGLALLELGRYDEAIEAYERALEL--DPDDADALYNLgiaLEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192

                        250
                 ....*....|....*....
gi 109638749 455 NFKLKYGRKKEAISDLQQL 473
Cdd:COG0457  193 AEVLLALLLALEQALRKKL 211
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 353-510 1.02e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 42.38  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  353 QHTKAIELLQEFSDQHPENAAeIKLTMAQLKISQGNISKACLILRSI---------------EELKHKP---GMVSAL-- 412
Cdd:PRK11447  162 QRPEAINQLQRLNADYPGNTG-LRNTLALLLFSSGRRDEGFAVLEQMakspagrdaaaqlwyGQIKDMPvsdASVAALqk 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  413 -VTMYSHEEDIDSAIEVFTQaiqwyQNHQPKSPAHLSLIREAAnfKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAY 491
Cdd:PRK11447  241 yLQVFSDGDSVAAARSQLAE-----QQKQLADPAFRARAQGLA--AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313

                         170       180
                  ....*....|....*....|....*..
gi 109638749  492 S--------LVDPEKAKALSKHLPSSD 510
Cdd:PRK11447  314 SqqgdraraVAQFEKALALDPHSSNRD 340
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 82-134 1.50e-03

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 38.00  E-value: 1.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 109638749   82 FEKAYCEYRLNRIENALKTIESANQQTDKLK--ELYGQVLYRLERYDECLAVYRD 134
Cdd:pfam12895  27 YLLAQCLFLNGQYKRAYELLRKAKLNGSSLGcrYLFAQCLLKLKKYDEALDALGK 81
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 180-268 1.63e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 1.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 180 YNTACALIGQGQLNQAMKILQKAEDLcrrslsedtdgteeDPQAELAiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKALEL--------------DPDNPEA--FALLGEILLQLGDLDEAIVLLHEALELDPDE 71


                 ....*....
gi 109638749 260 VGLLAVIAN 268
Cdd:COG4783   72 PEARLNLGL 80
TPR_19 pfam14559
Tetratricopeptide repeat;
351-414 3.21e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 3.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 109638749  351 EKQHTKAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVT 414
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNA-EARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 190-267 5.32e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 5.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 190 GQLNQAMKILQKAEDLCRRSLSEDtdgtEEDPQAelaiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTDV---GLLAVI 266
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLD----PDNADA-----LLDLAEALLAAGDTEEAEELLERALALDPDNPealYLLGLA 94


                 .
gi 109638749 267 A 267
Cdd:COG4235   95 A 95
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 114-259 5.59e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 114 LYGQVLYRLERYDECLAVYRDLVRNSqddydeerktnlsavvaaqsnwekvvPENLglqegthELCYNTACALIGQGQLN 193
Cdd:COG4235   22 LLGRAYLRLGRYDEALAAYEKALRLD--------------------------PDNA-------DALLDLAEALLAAGDTE 68

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109638749 194 QAMKILQKAEDLcrrslsedtdgteeDPQAELAiiHGQMAYILQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG4235   69 EAEELLERALAL--------------DPDNPEA--LYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 185-267 6.02e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 6.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 185 ALIGQGQLNQAMKILQKAEDLcrrslsedtdgteeDPqaELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLA 264
Cdd:COG5010   63 LYNKLGDFEESLALLEQALQL--------------DP--NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126


                 ...
gi 109638749 265 VIA 267
Cdd:COG5010  127 NLA 129
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 231-371 7.16e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 7.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 231 QMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINK-DQNVFDSKKKVKLTNAEgvefklskkqlQAIEFN 309
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLLHEALELDPDE-----------PEARLN 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109638749 310 KALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPEN 371
Cdd:COG4783   78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 194-473 8.30e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 8.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  194 QAMKILQKAEDLCRRSLSEDTDGTEedpqaelAIIhgQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITI 273
Cdd:TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTE-------AQI--GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  274 NKDQNVFDSKKKVkltnaegveFKLSKKQLQAIEFNKALLAMyTNQAEQCRKISASLqSQSPEHLLPVLIQAAQLCREKQ 353
Cdd:TIGR02917 717 KDYPAAIQAYRKA---------LKRAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKD 785

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749  354 HTKAIELLQEFSDQHPENAAEI-KLTMAQLkisQGNISKAC-LILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQ 431
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVLnNLAWLYL---ELKDPRALeYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 109638749  432 AIqwyqNHQPKSPA---HLSLIREAAnfklkyGRKKEAISDLQQL 473
Cdd:TIGR02917 863 AV----NIAPEAAAiryHLALALLAT------GRKAEARKELDKL 897
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 350-445 9.63e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.51  E-value: 9.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109638749 350 REKQHTKAIELLQEFSDQHPEN--AAEIKLTMAQLKISQGNISKACLILRSIeeLKHKPGMVSALVTMY----SHEE--D 421
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPNSplAPDALYWLGEAYYALGDYDEAAEAFEKL--LKRYPDSPKAPDALLklglSYLElgD 82

                         90       100
                 ....*....|....*....|....
gi 109638749 422 IDSAIEVFTQAIQWYqnhqPKSPA 445
Cdd:COG1729   83 YDKARATLEELIKKY----PDSEA 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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