NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|5902010|ref|NP_008911|]
View 

transcription termination factor 1, mitochondrial isoform 1 precursor [Homo sapiens]

Protein Classification

mTERF domain-containing protein( domain architecture ID 10495059)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
76-389 7.77e-92

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 278.72  E-value: 7.77e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010     76 LKNLLTMGV---DIDMARKRQPGVFHRMITNEQDLKM-FLLSKGASKEVIASIISRYPRAIT-RTPENLSKRWDLWRKIv 150
Cdd:pfam02536   1 LSLLESLGVtdsQISKILTRYPPVLHADVEKDLAPKLqFLLSLGASSSDLGKILSKYPRILGfKLEETMSTSVDFLKEI- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    151 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRtfSNSLDLNKQM--------VEFLQAAG 222
Cdd:pfam02536  80 GVDKSSIGGALRSWPSILGMRVGNNIKNNVEYLRELGVPQKLLARLLISRPQ--LLALDLVYLMkpktfeekVEFLKELG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    223 LSlghndpADFVRKIIFKNPFILIQS-TKRVKANIEFLRsTFNLNsEELLVLICGPGAEILDLSNdyarRSYANIKEKLF 301
Cdd:pfam02536 158 FS------VEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLS-EEELPRVIKKYPQILSLSE----RTILNRVEFLL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    302 SLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLStlNIT 379
Cdd:pfam02536 226 GLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEmKWPLKEVVEYPRVFGYSLeKRIKPRIKALVSKGLECS--LSW 303
                         330
                  ....*....|
gi 5902010    380 LLSWSKKRYE 389
Cdd:pfam02536 304 MLACSDERFL 313
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
76-389 7.77e-92

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 278.72  E-value: 7.77e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010     76 LKNLLTMGV---DIDMARKRQPGVFHRMITNEQDLKM-FLLSKGASKEVIASIISRYPRAIT-RTPENLSKRWDLWRKIv 150
Cdd:pfam02536   1 LSLLESLGVtdsQISKILTRYPPVLHADVEKDLAPKLqFLLSLGASSSDLGKILSKYPRILGfKLEETMSTSVDFLKEI- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    151 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRtfSNSLDLNKQM--------VEFLQAAG 222
Cdd:pfam02536  80 GVDKSSIGGALRSWPSILGMRVGNNIKNNVEYLRELGVPQKLLARLLISRPQ--LLALDLVYLMkpktfeekVEFLKELG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    223 LSlghndpADFVRKIIFKNPFILIQS-TKRVKANIEFLRsTFNLNsEELLVLICGPGAEILDLSNdyarRSYANIKEKLF 301
Cdd:pfam02536 158 FS------VEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLS-EEELPRVIKKYPQILSLSE----RTILNRVEFLL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    302 SLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLStlNIT 379
Cdd:pfam02536 226 GLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEmKWPLKEVVEYPRVFGYSLeKRIKPRIKALVSKGLECS--LSW 303
                         330
                  ....*....|
gi 5902010    380 LLSWSKKRYE 389
Cdd:pfam02536 304 MLACSDERFL 313
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
76-389 7.77e-92

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 278.72  E-value: 7.77e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010     76 LKNLLTMGV---DIDMARKRQPGVFHRMITNEQDLKM-FLLSKGASKEVIASIISRYPRAIT-RTPENLSKRWDLWRKIv 150
Cdd:pfam02536   1 LSLLESLGVtdsQISKILTRYPPVLHADVEKDLAPKLqFLLSLGASSSDLGKILSKYPRILGfKLEETMSTSVDFLKEI- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    151 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRtfSNSLDLNKQM--------VEFLQAAG 222
Cdd:pfam02536  80 GVDKSSIGGALRSWPSILGMRVGNNIKNNVEYLRELGVPQKLLARLLISRPQ--LLALDLVYLMkpktfeekVEFLKELG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    223 LSlghndpADFVRKIIFKNPFILIQS-TKRVKANIEFLRsTFNLNsEELLVLICGPGAEILDLSNdyarRSYANIKEKLF 301
Cdd:pfam02536 158 FS------VEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLS-EEELPRVIKKYPQILSLSE----RTILNRVEFLL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5902010    302 SLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLStlNIT 379
Cdd:pfam02536 226 GLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEmKWPLKEVVEYPRVFGYSLeKRIKPRIKALVSKGLECS--LSW 303
                         330
                  ....*....|
gi 5902010    380 LLSWSKKRYE 389
Cdd:pfam02536 304 MLACSDERFL 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH