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Conserved domains on  [gi|6319522|ref|NP_009604|]
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ribosomal 40S subunit protein S11B [Saccharomyces cerevisiae S288C]

Protein Classification

40S ribosomal protein S11( domain architecture ID 11488282)

40S ribosomal protein S11 similar to the gene product of the E. coli ortholog (ribosomal protein S17), which is thought to be involved in the recognition of termination codons

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 4-156 4.49e-86

40S ribosomal protein S11; Provisional


:

Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 248.85  E-value: 4.49e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522     4 ELTVQSERAFQKQPHIFNNPKVKTSKRTK---RWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKM 80
Cdd:PTZ00241   1 MADVQTERAFQKQEGVFQNSKRLLKKKTSkgvRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKM 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6319522    81 HRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQFAKF 156
Cdd:PTZ00241  81 KRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCFDVKEGDIVVVGQCRPLSKTVRFNVLKVekNEIIGNVRKQFVLF 158
 
Name Accession Description Interval E-value
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 4-156 4.49e-86

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 248.85  E-value: 4.49e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522     4 ELTVQSERAFQKQPHIFNNPKVKTSKRTK---RWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKM 80
Cdd:PTZ00241   1 MADVQTERAFQKQEGVFQNSKRLLKKKTSkgvRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKM 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6319522    81 HRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQFAKF 156
Cdd:PTZ00241  81 KRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCFDVKEGDIVVVGQCRPLSKTVRFNVLKVekNEIIGNVRKQFVLF 158
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 55-142 6.40e-40

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 130.11  E-value: 6.40e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522     55 DKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKT 134
Cdd:TIGR03630  14 DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCIDVKVGDIVIIAETRPLSKT 93


                  ....*...
gi 6319522    135 VRFNVVKV 142
Cdd:TIGR03630  94 KSFVVLGK 101
Ribosomal_S17_N pfam16205
Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher ...
 8-71 1.46e-37

Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher eukaryotic ribosomal subunit 17 proteins.


Pssm-ID: 435214  Cd Length: 67  Bit Score: 123.06  E-value: 1.46e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6319522      8 QSERAFQKQPHIFNNPK---VKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKIL 71
Cdd:pfam16205   1 QTEKAFQKQPGIFLNSKaslEGKKKKGRRYYKNVGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRIL 67
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 69-142 5.46e-32

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 109.05  E-value: 5.46e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6319522   69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPaFRVQVGDIVTVGQCRPISKTVRFNVVKV 142
Cdd:cd00364   1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEP-NECKVGDIVRIGECRPLSKTKRWVVVEI 73
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 67-142 3.30e-26

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 94.80  E-value: 3.30e-26
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6319522   67 RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVsPAFRVQVGDIVTVGQCRPISKTVRFNVVKV 142
Cdd:COG0186   7 RRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHD-ENNECKVGDTVRIMETRPLSKTKRWRVVEI 81
 
Name Accession Description Interval E-value
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 4-156 4.49e-86

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 248.85  E-value: 4.49e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522     4 ELTVQSERAFQKQPHIFNNPKVKTSKRTK---RWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKM 80
Cdd:PTZ00241   1 MADVQTERAFQKQEGVFQNSKRLLKKKTSkgvRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKM 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6319522    81 HRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQFAKF 156
Cdd:PTZ00241  81 KRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCFDVKEGDIVVVGQCRPLSKTVRFNVLKVekNEIIGNVRKQFVLF 158
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 36-142 2.85e-42

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 136.20  E-value: 2.85e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522    36 KNAGLGFKTPKTAIEgsyiDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAF 115
Cdd:PRK08572   1 RNIGLDVKPPEEECD----DPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCI 76

                         90       100
                 ....*....|....*....|....*..
gi 6319522   116 RVQVGDIVTVGQCRPISKTVRFNVVKV 142
Cdd:PRK08572  77 DAKVGDKVKIAECRPLSKTKSFVVVEK 103
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 55-142 6.40e-40

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 130.11  E-value: 6.40e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522     55 DKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKT 134
Cdd:TIGR03630  14 DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCIDVKVGDIVIIAETRPLSKT 93


                  ....*...
gi 6319522    135 VRFNVVKV 142
Cdd:TIGR03630  94 KSFVVLGK 101
Ribosomal_S17_N pfam16205
Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher ...
 8-71 1.46e-37

Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher eukaryotic ribosomal subunit 17 proteins.


Pssm-ID: 435214  Cd Length: 67  Bit Score: 123.06  E-value: 1.46e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6319522      8 QSERAFQKQPHIFNNPK---VKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKIL 71
Cdd:pfam16205   1 QTEKAFQKQPGIFLNSKaslEGKKKKGRRYYKNVGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRIL 67
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 69-142 5.46e-32

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 109.05  E-value: 5.46e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6319522   69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPaFRVQVGDIVTVGQCRPISKTVRFNVVKV 142
Cdd:cd00364   1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEP-NECKVGDIVRIGECRPLSKTKRWVVVEI 73
Ribosomal_S17 pfam00366
Ribosomal protein S17;
73-141 2.15e-30

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 104.78  E-value: 2.15e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6319522     73 GTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFrVQVGDIVTVGQCRPISKTVRFNVVK 141
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLSKTKRWVVVE 68
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 67-142 3.30e-26

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 94.80  E-value: 3.30e-26
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6319522   67 RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVsPAFRVQVGDIVTVGQCRPISKTVRFNVVKV 142
Cdd:COG0186   7 RRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHD-ENNECKVGDTVRIMETRPLSKTKRWRVVEI 81
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 69-140 1.03e-13

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 62.17  E-value: 1.03e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6319522     69 KILTGTVVSTKMHRTIVIR--RAYLHyiPKYNRYEKRHKNVPVHvSPAFRVQVGDIVTVGQCRPISKTVRFNVV 140
Cdd:TIGR03635   2 KTLQGVVVSDKMDKTVVVLveRRVKH--PLYKKIVKRTKKYHAH-DENNECKVGDVVRIIETRPLSKTKRWRLV 72
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 69-146 2.16e-13

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 61.71  E-value: 2.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319522    69 KILTGTVVSTKMHRTIVIR--RAYLHyiPKYNRYEKRHKNVPVHvSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAA 146
Cdd:PRK05610   7 KTLQGRVVSDKMDKTIVVLveRRVKH--PLYGKIVKRSKKYHAH-DENNEAKIGDVVRIMETRPLSKTKRWRLVEIVEKA 83
rps17 CHL00142
ribosomal protein S17; Validated
 69-142 1.00e-07

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 46.96  E-value: 1.00e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6319522    69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHvSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV 142
Cdd:CHL00142   4 KEKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVH-DEENECNIGDQVLIEETRPLSKTKRWILKEI 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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