|
Name |
Accession |
Description |
Interval |
E-value |
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
398-619 |
6.78e-110 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 328.42 E-value: 6.78e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 398 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLaqlmddshvrgsknkrgktgndYVEL 477
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRL----------------------GVEL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 FEAGYGGSDlvTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFN 557
Cdd:cd17876 59 YEKGYGKDP--AAVAKEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFN 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 398366427 558 DAFGKG------RNLDFFIISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:cd17876 137 QALADYspsdnpRLIDGIVLTKFDTIDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRX |
pfam09201 |
SRX, signal recognition particle receptor alpha subunit; Members of this family, which are ... |
1-155 |
8.56e-86 |
|
SRX, signal recognition particle receptor alpha subunit; Members of this family, which are predominantly found in eukaryotic signal recognition particle receptor alpha, consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta). Structurally the alpha subunit is SNARE-like.
Pssm-ID: 370358 Cd Length: 148 Bit Score: 264.24 E-value: 8.56e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVanantdgFDFNLLTINSEHKNSPSFNALFYLN 80
Cdd:pfam09201 1 MFDQLAIFTPQGQVLYQYNCLGKKFAETQINAFISHLITSPVTKKEDS-------SKFNLLSVTSESSNSRSFSAMFHVS 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366427 81 KQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSLHLSESILKNRQGQNEKNKHNYVDILQGIEDDLKKFEQYF 155
Cdd:pfam09201 74 KQPELYFVVTYAEQSLELNQEAEETLDLAIKLWDSLGLNESILKNLSGKGKKNEHNYIDILEGLEEDLSKFDQYF 148
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
293-621 |
3.85e-70 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 230.24 E-value: 3.85e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 293 FGFLQKhvLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTP 372
Cdd:PRK14974 47 PGFFDK--AKITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 373 GVSVDLLREIQSKRSkkdeegkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLA 452
Cdd:PRK14974 125 GDLFDLIEEIKSKGK---------PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 453 qlmddshvrgsknkrgktgndyVELFEAGYGGSDlvTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQA 532
Cdd:PRK14974 196 ----------------------VKVIKHKYGADP--AAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVT 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 533 KPDKIIMVGEALVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDTvGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSV 612
Cdd:PRK14974 252 KPDLVIFVGDALAGNDAVEQAREFNEAVG----IDGVILTKVDA-DAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDP 326
|
....*....
gi 398366427 613 KWAVNTLMS 621
Cdd:PRK14974 327 DWFVDKLLG 335
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
397-620 |
1.21e-65 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 213.42 E-value: 1.21e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 397 PYVFSIVGVNGVGKSTNLSKLAFWL-LQNNFKVLIVACDTFRSGAVEQLRVHVENLAqlmddshvrgsknkrgktgndyV 475
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLkLKGGKKVLLVAADTFRAAAVEQLKTYAEILG----------------------V 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 476 ELFEAGYGGSDLvtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKN 555
Cdd:smart00962 59 VPVAGGEGADPV--AVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKA 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366427 556 FNDAFGkgrnLDFFIISKCDtVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTLM 620
Cdd:smart00962 137 FNEALG----LTGIILTKLD-GTAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
399-619 |
6.12e-55 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 185.05 E-value: 6.12e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVEnlaqlmddshvrgsknkrgKTGNDYVelf 478
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAE-------------------KLGVPVF--- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 479 eAGYGGSDLVtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFND 558
Cdd:pfam00448 60 -GSKTGADPA-AVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNE 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 398366427 559 AFGkgrnLDFFIISKCDTVGEmLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:pfam00448 138 AVG----ITGVILTKLDGDAK-GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
310-619 |
4.68e-52 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 180.15 E-value: 4.68e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 310 DLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTanwtSVENTARESLTKALTQILTPgvsvDLLREIQSKRSKK 389
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKV----KDAEKLKEILKEYLKEILKE----DLLKNTDLELIVE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 390 DEEgkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLaqlmddshvrGSKNKRGK 469
Cdd:TIGR00064 74 ENK----PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRL----------GVDVIKQK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 470 TGNDyvelfeagyggsdlVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLK------SFADQAKPDKIIMVGEA 543
Cdd:TIGR00064 140 EGAD--------------PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKkikrviKKVDKDAPDEVLLVLDA 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398366427 544 LVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDTVGEMlGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:TIGR00064 206 TTGQNALEQAKVFNEAVG----LTGIILTKLDGTAKG-GIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEAL 276
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
300-619 |
1.61e-50 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 176.75 E-value: 1.61e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 300 VLGNKTINESDLksvlEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANwtsvENTARESLTKALTQILTPgvsVDLL 379
Cdd:COG0552 24 FSGKKKIDEDLL----EELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEELKEALKEELLEILDP---VDKP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 380 REIQSKRskkdeegkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLaqlmddsh 459
Cdd:COG0552 93 LAIEEKK----------PFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERV-------- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 460 vrGSKNKRGKTGNDyvelfEAGyggsdlvtkIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLK------SFADQAK 533
Cdd:COG0552 155 --GVPVIAQKEGAD-----PAA---------VAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKkikrviKKLDPDA 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 534 PDKIIMVGEALVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDtvgemlGT-----MVNMVYATGIPILFVGVGQTYTDLR 608
Cdd:COG0552 219 PHEVLLVLDATTGQNALSQAKVFNEAVG----VTGIVLTKLD------GTakggvVLAIADELGIPIKFIGVGEGIDDLR 288
|
330
....*....|.
gi 398366427 609 TLSVKWAVNTL 619
Cdd:COG0552 289 PFDAEEFVDAL 299
|
|
| longin-like |
cd14818 |
Longin-like domains; Longin-like domains are small protein domains present in a variety of ... |
3-158 |
1.12e-23 |
|
Longin-like domains; Longin-like domains are small protein domains present in a variety of proteins and members of protein complexes involved in or required for different steps during the transport of proteins from the ribosome to the ER to the plasma membrane, via the Golgi apparatus. Examples are mu and sigma subunits of the heterotetrameric adaptor protein (AP) complex, zeta and delta subunits of the heterotetrameric F-COPI complex, a subgroup of R-SNARE proteins, a subfamily of the transport protein particle (TRAPP), and the signal recognition particle receptor subunit alpha (SR-alpha).
Pssm-ID: 341426 Cd Length: 117 Bit Score: 96.44 E-value: 1.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 3 DQLAVFTPQGQVLYQYNCLGKK----FSEIQINSFISQLITSpvtrkesvanantdGFDFNLLTINsehknspSFNALFY 78
Cdd:cd14818 1 LQLAVFDPQGQVLAASNWLGKKpsvkFSLIQIKSFFSKLITS--------------GFDFLTLTIG-------SYTFHYY 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 79 LNkqPELYFVVTFAEQtlELNQETQQTLALVLKLWNSLHLSESILKNRqgqneknkhnyvdilqgiEDDLKKFEQYFRIK 158
Cdd:cd14818 60 LN--KGLYFVVITDEQ--ELRQELFQTLNLLLKEFNSLHGSEVITKNI------------------EDDLEEFESYLDIK 117
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
300-370 |
9.04e-04 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 38.22 E-value: 9.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 398366427 300 VLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKtanwtsvENTARESLTKALTQIL 370
Cdd:pfam02881 12 LRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEK-------KLKPPQEVKKILKEEL 75
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
398-619 |
6.78e-110 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 328.42 E-value: 6.78e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 398 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLaqlmddshvrgsknkrgktgndYVEL 477
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRL----------------------GVEL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 FEAGYGGSDlvTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFN 557
Cdd:cd17876 59 YEKGYGKDP--AAVAKEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFN 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 398366427 558 DAFGKG------RNLDFFIISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:cd17876 137 QALADYspsdnpRLIDGIVLTKFDTIDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRX |
pfam09201 |
SRX, signal recognition particle receptor alpha subunit; Members of this family, which are ... |
1-155 |
8.56e-86 |
|
SRX, signal recognition particle receptor alpha subunit; Members of this family, which are predominantly found in eukaryotic signal recognition particle receptor alpha, consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta). Structurally the alpha subunit is SNARE-like.
Pssm-ID: 370358 Cd Length: 148 Bit Score: 264.24 E-value: 8.56e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVanantdgFDFNLLTINSEHKNSPSFNALFYLN 80
Cdd:pfam09201 1 MFDQLAIFTPQGQVLYQYNCLGKKFAETQINAFISHLITSPVTKKEDS-------SKFNLLSVTSESSNSRSFSAMFHVS 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366427 81 KQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSLHLSESILKNRQGQNEKNKHNYVDILQGIEDDLKKFEQYF 155
Cdd:pfam09201 74 KQPELYFVVTYAEQSLELNQEAEETLDLAIKLWDSLGLNESILKNLSGKGKKNEHNYIDILEGLEEDLSKFDQYF 148
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
293-621 |
3.85e-70 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 230.24 E-value: 3.85e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 293 FGFLQKhvLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTP 372
Cdd:PRK14974 47 PGFFDK--AKITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 373 GVSVDLLREIQSKRSkkdeegkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLA 452
Cdd:PRK14974 125 GDLFDLIEEIKSKGK---------PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 453 qlmddshvrgsknkrgktgndyVELFEAGYGGSDlvTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQA 532
Cdd:PRK14974 196 ----------------------VKVIKHKYGADP--AAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVT 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 533 KPDKIIMVGEALVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDTvGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSV 612
Cdd:PRK14974 252 KPDLVIFVGDALAGNDAVEQAREFNEAVG----IDGVILTKVDA-DAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDP 326
|
....*....
gi 398366427 613 KWAVNTLMS 621
Cdd:PRK14974 327 DWFVDKLLG 335
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
397-620 |
1.21e-65 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 213.42 E-value: 1.21e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 397 PYVFSIVGVNGVGKSTNLSKLAFWL-LQNNFKVLIVACDTFRSGAVEQLRVHVENLAqlmddshvrgsknkrgktgndyV 475
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLkLKGGKKVLLVAADTFRAAAVEQLKTYAEILG----------------------V 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 476 ELFEAGYGGSDLvtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKN 555
Cdd:smart00962 59 VPVAGGEGADPV--AVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKA 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366427 556 FNDAFGkgrnLDFFIISKCDtVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTLM 620
Cdd:smart00962 137 FNEALG----LTGIILTKLD-GTAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
399-619 |
6.12e-55 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 185.05 E-value: 6.12e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVEnlaqlmddshvrgsknkrgKTGNDYVelf 478
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAE-------------------KLGVPVF--- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 479 eAGYGGSDLVtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFND 558
Cdd:pfam00448 60 -GSKTGADPA-AVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNE 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 398366427 559 AFGkgrnLDFFIISKCDTVGEmLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:pfam00448 138 AVG----ITGVILTKLDGDAK-GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
310-619 |
4.68e-52 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 180.15 E-value: 4.68e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 310 DLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTanwtSVENTARESLTKALTQILTPgvsvDLLREIQSKRSKK 389
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKV----KDAEKLKEILKEYLKEILKE----DLLKNTDLELIVE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 390 DEEgkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLaqlmddshvrGSKNKRGK 469
Cdd:TIGR00064 74 ENK----PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRL----------GVDVIKQK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 470 TGNDyvelfeagyggsdlVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLK------SFADQAKPDKIIMVGEA 543
Cdd:TIGR00064 140 EGAD--------------PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKkikrviKKVDKDAPDEVLLVLDA 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398366427 544 LVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDTVGEMlGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:TIGR00064 206 TTGQNALEQAKVFNEAVG----LTGIILTKLDGTAKG-GIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEAL 276
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
398-613 |
5.02e-52 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 177.18 E-value: 5.02e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 398 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAqlmddshvrgsknkrgktgndyVEL 477
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLG----------------------VPV 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 FEAGYGGSDlvTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFN 557
Cdd:cd03115 59 FESYTGTDP--ASIAQEAVEKAKLEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFN 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 398366427 558 DAFGkgrnLDFFIISKCDTVGEmLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613
Cdd:cd03115 137 EAVG----LTGVILTKLDGTAK-GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPE 187
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
300-619 |
1.61e-50 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 176.75 E-value: 1.61e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 300 VLGNKTINESDLksvlEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANwtsvENTARESLTKALTQILTPgvsVDLL 379
Cdd:COG0552 24 FSGKKKIDEDLL----EELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEELKEALKEELLEILDP---VDKP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 380 REIQSKRskkdeegkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLaqlmddsh 459
Cdd:COG0552 93 LAIEEKK----------PFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERV-------- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 460 vrGSKNKRGKTGNDyvelfEAGyggsdlvtkIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLK------SFADQAK 533
Cdd:COG0552 155 --GVPVIAQKEGAD-----PAA---------VAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKkikrviKKLDPDA 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 534 PDKIIMVGEALVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDtvgemlGT-----MVNMVYATGIPILFVGVGQTYTDLR 608
Cdd:COG0552 219 PHEVLLVLDATTGQNALSQAKVFNEAVG----VTGIVLTKLD------GTakggvVLAIADELGIPIKFIGVGEGIDDLR 288
|
330
....*....|.
gi 398366427 609 TLSVKWAVNTL 619
Cdd:COG0552 289 PFDAEEFVDAL 299
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
398-619 |
1.09e-48 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 168.52 E-value: 1.09e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 398 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAqlmddshvrgsknkrgktgndyVEL 477
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLG----------------------VPV 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 FEAGYGGSDlvTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLK------SFADQAKPDKIIMVGEALVGTDSVQ 551
Cdd:cd17874 59 ISQNEGADP--AAVAFDAIQAAKARGIDVVLIDTAGRLHTKKNLMEELKkikrviKKKDPEAPHEVLLVLDATTGQNALE 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 398366427 552 QAKNFNDAFGkgrnLDFFIISKCDTVGEMlGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619
Cdd:cd17874 137 QAKEFNEAVG----LTGIILTKLDGTAKG-GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
399-609 |
6.37e-40 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 144.28 E-value: 6.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVhvenLAQLMDdshvrgsknkrgktgndyVELF 478
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQT----LGEQVG------------------VPVF 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 479 EAGYGGSdlVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFND 558
Cdd:cd18539 60 ESGDGQS--PVDIAKRALEKAKEEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNE 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 398366427 559 AFGkgrnLDFFIISKCD--TVGemlGTMVNMVYATGIPILFVGVGQTYTDLRT 609
Cdd:cd18539 138 RLG----LTGVVLTKLDgdARG---GAALSIRHVTGKPIKFIGVGEKIEDLEP 183
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
397-607 |
7.46e-38 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 145.16 E-value: 7.46e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVhvenLAQlmddshvrgsknkrgKTGndyVE 476
Cdd:COG0541 100 PTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKT----LGE---------------QIG---VP 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 477 LFEAGyGGSDLVtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNF 556
Cdd:COG0541 158 VFPEE-DGKDPV-DIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAF 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 398366427 557 NDAFGkgrnLDFFIISKCD--TVGemlGTMVNMVYATGIPILFVGVGQTYTDL 607
Cdd:COG0541 236 NEALG----LTGVILTKLDgdARG---GAALSIRAVTGKPIKFIGTGEKLDDL 281
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
300-608 |
1.02e-37 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 142.16 E-value: 1.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 300 VLGNKTINESdlksVLEKLTQQLITKNVAPEAADYLTQqvshDLVGSKTANWTSVENTARESLTKALTQILTPgvsVDLL 379
Cdd:PRK10416 38 LFAKKKIDED----LLEELEELLIEADVGVETTEEIIE----ELRERVKRKNLKDPEELKELLKEELAEILEP---VEKP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 380 REIQSKRskkdeegkcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVEnlaqlmddsh 459
Cdd:PRK10416 107 LNIEEKK----------PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE---------- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 460 vrgsknkrgKTGNDYVelfeAGYGGSDlVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLK------SFADQAK 533
Cdd:PRK10416 167 ---------RVGVPVI----AQKEGAD-PASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKkikrviKKADPDA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 534 PDKIIMVGEALVGTDSVQQAKNFNDAFGkgrnLDFFIISKCDtvgemlGT-----MVNMVYATGIPILFVGVGQTYTDLR 608
Cdd:PRK10416 233 PHEVLLVLDATTGQNALSQAKAFHEAVG----LTGIILTKLD------GTakggvVFAIADELGIPIKFIGVGEGIDDLQ 302
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
397-607 |
2.43e-31 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 126.86 E-value: 2.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRvhvenlaQLMDDSHVrgsknkrgktgndyve 476
Cdd:PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLK-------QLAEKIGV---------------- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 477 LFeagYGGSDLVT--KIAKQAIKYSRDQnfDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAK 554
Cdd:PRK00771 152 PF---YGDPDNKDavEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAK 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 398366427 555 NFNDAFGkgrnLDFFIISKCDtvgemlGT-----MVNMVYATGIPILFVGVGQTYTDL 607
Cdd:PRK00771 227 AFHEAVG----IGGIIITKLD------GTakgggALSAVAETGAPIKFIGTGEKIDDL 274
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
398-613 |
3.17e-31 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 120.38 E-value: 3.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 398 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRvhvenlaQLMDDSHVRgsknkrgktgndyvel 477
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLK-------QNATKARVP---------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 FEAGYGGSDLVtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFN 557
Cdd:cd17875 58 FYGSYTEKDPV-KIAKEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFK 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 398366427 558 DAFGKGRnldfFIISKCD--TVGemlGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613
Cdd:cd17875 137 EAVDIGS----VIITKLDghAKG---GGALSAVAATGAPIIFIGTGEHIDDLEPFDPK 187
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
298-602 |
2.34e-29 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 119.58 E-value: 2.34e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVgsktanwtsvENTARESLTKALTQILtPGVSVD 377
Cdd:COG1419 91 EEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLS----------AEEAWRALLEALARRL-PVAEDP 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 378 LLreiqskrskkdEEGKcdpyVFSIVGVNGVGKSTNLSKLAFWL-LQNNFKVLIVACDTFRSGAVEQLRVHvenlAQLMD 456
Cdd:COG1419 160 LL-----------DEGG----VIALVGPTGVGKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTY----ARILG 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 457 dshvrgsknkrgktgndyVELFEAgYGGSDLvtkiaKQAIKYSRDqnFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDK 536
Cdd:COG1419 221 ------------------VPVEVA-YDPEEL-----KEALERLRD--KDLVLIDTAGRSPRDPELIEELKALLDAGPPIE 274
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398366427 537 IIMVgeaLVGTDSVQQAKNFNDAFgKGRNLDFFIISKCDTVgEMLGTMVNMVYATGIPILFVGVGQ 602
Cdd:COG1419 275 VYLV---LSATTKYEDLKEIVEAF-SSLGLDGLILTKLDET-ASLGSILNLLIRTGLPLSYITNGQ 335
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
306-620 |
1.15e-24 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 106.84 E-value: 1.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 306 INESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTPGVsvdllreiQSK 385
Cdd:TIGR01425 22 IDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCNLVDPGV--------EAF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 386 RSKKdeeGKcdPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVenlaqlmddshvrgskn 465
Cdd:TIGR01425 94 TPKK---GK--TCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNA----------------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 466 KRGKTGndyvelFEAGYGGSDLVtKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALV 545
Cdd:TIGR01425 152 TKAGIP------FYGSYEESDPV-KIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSI 224
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366427 546 GTDSVQQAKNFNDAFGKGRnldfFIISKCDTVGEMlGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTLM 620
Cdd:TIGR01425 225 GQAAFGQAKAFKDSVEVGS----VIITKLDGHAKG-GGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLL 294
|
|
| longin-like |
cd14818 |
Longin-like domains; Longin-like domains are small protein domains present in a variety of ... |
3-158 |
1.12e-23 |
|
Longin-like domains; Longin-like domains are small protein domains present in a variety of proteins and members of protein complexes involved in or required for different steps during the transport of proteins from the ribosome to the ER to the plasma membrane, via the Golgi apparatus. Examples are mu and sigma subunits of the heterotetrameric adaptor protein (AP) complex, zeta and delta subunits of the heterotetrameric F-COPI complex, a subgroup of R-SNARE proteins, a subfamily of the transport protein particle (TRAPP), and the signal recognition particle receptor subunit alpha (SR-alpha).
Pssm-ID: 341426 Cd Length: 117 Bit Score: 96.44 E-value: 1.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 3 DQLAVFTPQGQVLYQYNCLGKK----FSEIQINSFISQLITSpvtrkesvanantdGFDFNLLTINsehknspSFNALFY 78
Cdd:cd14818 1 LQLAVFDPQGQVLAASNWLGKKpsvkFSLIQIKSFFSKLITS--------------GFDFLTLTIG-------SYTFHYY 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 79 LNkqPELYFVVTFAEQtlELNQETQQTLALVLKLWNSLHLSESILKNRqgqneknkhnyvdilqgiEDDLKKFEQYFRIK 158
Cdd:cd14818 60 LN--KGLYFVVITDEQ--ELRQELFQTLNLLLKEFNSLHGSEVITKNI------------------EDDLEEFESYLDIK 117
|
|
| SR_alpha_SRX |
cd14826 |
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle ... |
3-158 |
2.00e-23 |
|
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle receptor subunit alpha (SR-alpha) is part of the membrane-associated heterodimeric receptor for the signal recognition particle (SRP). The signal recognition particle (SRP) pathway is highly conserved and plays an important role in the translocation of proteins across and insertion into membranes by targeting the translating ribosome to the endoplasmic reticulum. The N-terminal SRX domain of SR-alpha has a profilin-like fold and has been shown to be the interaction site with the second subunit, SR-beta.
Pssm-ID: 341430 Cd Length: 118 Bit Score: 95.73 E-value: 2.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 3 DQLAVFTPQGQVLYQYNCLGkKFSEIQINSFISQLITSPVTRKESvanantdgfdFNLLtinsehknspSFNALFYLNKQ 82
Cdd:cd14826 1 DQFSIFTKGGIVLWSFNFTG-LFKGSPINALIKDVLLEERSGESS----------FTYD----------SYTLKWTLDNE 59
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398366427 83 PELYFVVTFaeQTLELNQETQQTLALVLKLWNSLHLSESILKNrqgqneknkhnyvdiLQGIEDDLKKFEQYFRIK 158
Cdd:cd14826 60 LGLVFVVVY--QKILQLQYIDELLDLVKKLFVSLYKNELKNKN---------------ALGIDDDLFKFDEYFKQK 118
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
399-603 |
1.82e-21 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 92.23 E-value: 1.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLA-FWLLQNNFKVLIVACDTFRSGAVEQLRVHVEnlaqLMDdshvrgsknkrgktgndyVEl 477
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAaRYVLKKGKKVALITTDTYRIGAVEQLKTYAE----IMG------------------IP- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 FEAGYGGSDLvtkiaKQAIkySRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVgeaLVGTDSVQQAKNFN 557
Cdd:cd17873 59 VEVAEDPEDL-----ADAL--ERLSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLV---LSATTKAKDLKEII 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 398366427 558 DAFgKGRNLDFFIISKCDTVGEmLGTMVNMVYATGIPILFVGVGQT 603
Cdd:cd17873 129 ERF-SPLGYRGLILTKLDETTS-LGSVLSVLAESQLPVSYVTTGQR 172
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
297-602 |
1.96e-18 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 88.03 E-value: 1.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 297 QKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQqvshdlvgsktaNWTSVENTARESLTKALTQILTPGVsv 376
Cdd:PRK05703 149 QLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLE------------HMPPRERTAWRYLLELLANMIPVRV-- 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 377 dllrEIQSKRSKKdeegkcdpYVFsiVGVNGVGKSTNLSKLA--FWLLQNNFKVLIVACDTFRSGAVEQLRVhvenLAQL 454
Cdd:PRK05703 215 ----EDILKQGGV--------VAL--VGPTGVGKTTTLAKLAarYALLYGKKKVALITLDTYRIGAVEQLKT----YAKI 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 455 MDDShvrgsknkrgktgndyvelFEAGYGGSDLvtkiaKQAIKYSRdqNFDIVLMDTAGRRHNDPTLMSPLKSFAD-QAK 533
Cdd:PRK05703 277 MGIP-------------------VEVVYDPKEL-----AKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEfSGE 330
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398366427 534 PDKIIMVgeaLVGT----DSVQQAKNFNDAfgkgrNLDFFIISKCD-TVGemLGTMVNMVYATGIPILFVGVGQ 602
Cdd:PRK05703 331 PIDVYLV---LSATtkyeDLKDIYKHFSRL-----PLDGLIFTKLDeTSS--LGSILSLLIESGLPISYLTNGQ 394
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
314-513 |
5.50e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 72.75 E-value: 5.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 314 VLEKLTQQLITKNVAPEAADYLTQQVShdlvgsKTANWTSVENTARESLTKaltQILTPGVSVDLLREiqskrskkdeeg 393
Cdd:TIGR03499 135 ERAKLYERLLEAGVSEELARELLEKLP------EDADAEDAWRWLREALEG---MLPVKPEEDPILEQ------------ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 394 kcdPYVFSIVGVNGVGKSTNLSKLAFWLLQN--NFKVLIVACDTFRSGAVEQLRVhvenLAQLMDdshvrgsknkrgktg 471
Cdd:TIGR03499 194 ---GGVIALVGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYRIGAVEQLKT----YAEILG--------------- 251
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 398366427 472 ndyVELFEAgYGGSDLvtkiaKQAIKysRDQNFDIVLMDTAG 513
Cdd:TIGR03499 252 ---IPVKVA-RDPKEL-----REALD--RLRDKDLILIDTAG 282
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
399-606 |
1.96e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 63.22 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAqlmddshvrgsknkrgktgndyVELF 478
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLD----------------------VELI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 479 EAGYGGSdlvtkiAKQAIKYSRDQN-FDIVLMDTAGRRHNDPTLMSPLKSFADQAKPD-KIIMVGEALVGTDSVQQAKNF 556
Cdd:PRK12726 266 VATSPAE------LEEAVQYMTYVNcVDHILIDTVGRNYLAEESVSEISAYTDVVHPDlTCFTFSSGMKSADVMTILPKL 339
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 398366427 557 NDAfgkgrNLDFFIISKCDTVGEmLGTMVNMVYATGIPILFVGVGQTYTD 606
Cdd:PRK12726 340 AEI-----PIDGFIITKMDETTR-IGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
402-547 |
3.66e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.06 E-value: 3.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 402 IVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENlaqlmddshvrgsknkrgktgndyvelfeaG 481
Cdd:smart00382 7 IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG------------------------------G 56
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398366427 482 YGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVGEALVGT 547
Cdd:smart00382 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILT 122
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
399-602 |
3.33e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 50.18 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLA--FWLLQNNFKVLIVACDTFRSGAVEQLRVHvenlAQLMdDSHVRGSKnkrgktgnDYVE 476
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAarCVAREGADQLALLTTDSFRIGALEQLRIY----GRIL-GVPVHAVK--------DAAD 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 477 LfeagyggsdlvtKIAKQAIKYSRdqnfdIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMV------GEALvgtDSV 550
Cdd:PRK14723 254 L------------RFALAALGDKH-----LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLlnaashGDTL---NEV 313
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 398366427 551 QQAKNfNDAfgkGRNLDFFIISKCDTVGEmLGTMVNMVYATGIPILFVGVGQ 602
Cdd:PRK14723 314 VHAYR-HGA---GEDVDGCIITKLDEATH-LGPALDTVIRHRLPVHYVSTGQ 360
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
407-596 |
2.11e-05 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 46.18 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 407 GVGKSTNLSKLAFWLLQNNFKVLIVACD-----TFRSGAVEQLRVHVENLAQ-LMDDSHVRGSKNKRGKTGNDYVEL--- 477
Cdd:pfam01656 9 GVGKTTLAANLARALARRGLRVLLIDLDpqsnnSSVEGLEGDIAPALQALAEgLKGRVNLDPILLKEKSDEGGLDLIpgn 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 478 -----FEAGYGGSDLVTKIaKQAIKYSRDqNFDIVLMDTAGRRHndPTLMSPLKSFAD---QAKPDKIIMVGealvgtds 549
Cdd:pfam01656 89 idlekFEKELLGPRKEERL-REALEALKE-DYDYVIIDGAPGLG--ELLRNALIAADYviiPLEPEVILVED-------- 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 398366427 550 VQQAKNFNDAFGKGRNLD-----FFIISKCDtvGEMLGTMVNMVYAT---GIPIL 596
Cdd:pfam01656 157 AKRLGGVIAALVGGYALLglkiiGVVLNKVD--GDNHGKLLKEALEEllrGLPVL 209
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
295-602 |
4.24e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 43.03 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 295 FLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVShdlvgsktanwtSVENTARESLTKALTQILTPGV 374
Cdd:PRK12724 141 FLESETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLS------------PVDQGRNHNVTERAVTYLEERV 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 375 SVD--LLREIQSKRSKkdeegkcdpyVFSIVGVNGVGKSTNLSKLAF-WLLQNNFKVLIVACDTFRSGAVEQLRVHVENL 451
Cdd:PRK12724 209 SVDsdLFSGTGKNQRK----------VVFFVGPTGSGKTTSIAKLAAkYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTM 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366427 452 AQLMddshvrgsknkrgktgndyvelfeagYGGSDLvtKIAKQAIkySRDQNfDIVLMDTAGRRHNDPTLMSPLKSFADQ 531
Cdd:PRK12724 279 GMPF--------------------------YPVKDI--KKFKETL--ARDGS-ELILIDTAGYSHRNLEQLERMQSFYSC 327
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398366427 532 -AKPDKI--IMVGEALVGTDSVQQAKNFNDAFGKGRNLdffiISKCDTvGEMLGTMVNMVYATGIPILFVGVGQ 602
Cdd:PRK12724 328 fGEKDSVenLLVLSSTSSYHHTLTVLKAYESLNYRRIL----LTKLDE-ADFLGSFLELADTYSKSFTYLSVGQ 396
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
300-370 |
9.04e-04 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 38.22 E-value: 9.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 398366427 300 VLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKtanwtsvENTARESLTKALTQIL 370
Cdd:pfam02881 12 LRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEK-------KLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
399-446 |
4.71e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.95 E-value: 4.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 398366427 399 VFSIVGVNGVGKSTNLSKLA--FWLLQNNFKVLIVACDTFRSGAVEQLRV 446
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAarCVMRHGASKVALLTTDSYRIGGHEQLRI 307
|
|
| |
