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Conserved domains on  [gi|6322789|ref|NP_012862|]
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Bli1p [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BLI1 super family cl38608
BLOC-1 interactor 1; In yeast BLOC-1 consists of six subunits localized to the endosomes. In ...
 2-110 9.73e-28

BLOC-1 interactor 1; In yeast BLOC-1 consists of six subunits localized to the endosomes. In the absence of BLOC-1 subunits, the balance between recycling and degradation of selected cargoes is impaired. This family contains BLI1 (BlOC-1 interactor 1) protein, a subunit of the BLOC-1 complex which mediates endosomal maturation.


The actual alignment was detected with superfamily member pfam17324:

Pssm-ID: 340040  Cd Length: 111  Bit Score: 97.51  E-value: 9.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322789      2 GEQNKLYYDVEKLVNSLQESFDLDCAQSVSLFTSKSRSNEAWLEELENKFKLKDDVELDDVENLRAEIDMKLNMLEDKVS 81
Cdd:pfam17324   3 EQERVLHQDIEHCVEKLQEFVDTELAKAISVFSSKTSDNEKWLEEISTKYKLKDEDELKAFKELKKDHLKKLEELEKKVD 82

                          90       100
                  ....*....|....*....|....*....
gi 6322789     82 YYERLYKELEEFQNEIKIKTVVNNRRQSR 110
Cdd:pfam17324  83 YYEKLCDELEEFQNELEVKTKLEQNRRSR 111
 
Name Accession Description Interval E-value
BLI1 pfam17324
BLOC-1 interactor 1; In yeast BLOC-1 consists of six subunits localized to the endosomes. In ...
 2-110 9.73e-28

BLOC-1 interactor 1; In yeast BLOC-1 consists of six subunits localized to the endosomes. In the absence of BLOC-1 subunits, the balance between recycling and degradation of selected cargoes is impaired. This family contains BLI1 (BlOC-1 interactor 1) protein, a subunit of the BLOC-1 complex which mediates endosomal maturation.


Pssm-ID: 340040  Cd Length: 111  Bit Score: 97.51  E-value: 9.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322789      2 GEQNKLYYDVEKLVNSLQESFDLDCAQSVSLFTSKSRSNEAWLEELENKFKLKDDVELDDVENLRAEIDMKLNMLEDKVS 81
Cdd:pfam17324   3 EQERVLHQDIEHCVEKLQEFVDTELAKAISVFSSKTSDNEKWLEEISTKYKLKDEDELKAFKELKKDHLKKLEELEKKVD 82

                          90       100
                  ....*....|....*....|....*....
gi 6322789     82 YYERLYKELEEFQNEIKIKTVVNNRRQSR 110
Cdd:pfam17324  83 YYEKLCDELEEFQNELEVKTKLEQNRRSR 111
 
Name Accession Description Interval E-value
BLI1 pfam17324
BLOC-1 interactor 1; In yeast BLOC-1 consists of six subunits localized to the endosomes. In ...
 2-110 9.73e-28

BLOC-1 interactor 1; In yeast BLOC-1 consists of six subunits localized to the endosomes. In the absence of BLOC-1 subunits, the balance between recycling and degradation of selected cargoes is impaired. This family contains BLI1 (BlOC-1 interactor 1) protein, a subunit of the BLOC-1 complex which mediates endosomal maturation.


Pssm-ID: 340040  Cd Length: 111  Bit Score: 97.51  E-value: 9.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322789      2 GEQNKLYYDVEKLVNSLQESFDLDCAQSVSLFTSKSRSNEAWLEELENKFKLKDDVELDDVENLRAEIDMKLNMLEDKVS 81
Cdd:pfam17324   3 EQERVLHQDIEHCVEKLQEFVDTELAKAISVFSSKTSDNEKWLEEISTKYKLKDEDELKAFKELKKDHLKKLEELEKKVD 82

                          90       100
                  ....*....|....*....|....*....
gi 6322789     82 YYERLYKELEEFQNEIKIKTVVNNRRQSR 110
Cdd:pfam17324  83 YYEKLCDELEEFQNELEVKTKLEQNRRSR 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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