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Conserved domains on  [gi|6466466|ref|NP_015561|]
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ran-binding protein 3 isoform RANBP3-d [Homo sapiens]

Protein Classification

Ran-binding domain-containing protein( domain architecture ID 10192225)

Ran-binding domain (RanBD)-containing protein similar to mammalian Ran-binding protein 3 (RanBP3) that acts as a cofactor for XPO1/CRM1-mediated nuclear export, perhaps as export complex scaffolding protein

CATH:  2.30.29.30
Gene Ontology:  GO:0046907|GO:0031267|GO:0006611|GO:0046332
PubMed:  7638224
SCOP:  4002438

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RanBD_RanBP3 cd13180
Ran-binding protein 3 Ran-binding domain; RanBP3, a Ran-interacting nuclear protein, unlike ...
 393-508 3.76e-61

Ran-binding protein 3 Ran-binding domain; RanBP3, a Ran-interacting nuclear protein, unlike the related proteins RanBP1 and RanBP2, which promote disassembly of the export complex in the cytosol, acts as a CRM1 cofactor, enhancing nuclear export signal (NES) export by stabilizing the export complex in the nucleus. CRM1/Exportin1 is responsible for exporting many proteins and ribonucleoproteins from the nucleus to the cytosol. RanBP3 also alters the cargo selectivity of CRM1, promoting recognition of the NES of HIV-1 Rev and of other cargos while deterring recognition of the import adaptor protein Snurportin1. RanBP3 contains a N-terminal nuclear localization signal (NLS), 2 FxFG motifs, and a single RanBD. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.


:

Pssm-ID: 270001  Cd Length: 113  Bit Score: 197.45  E-value: 3.76e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAStdDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKS 472
Cdd:cd13180   1 TGEEGETNVFQVNCKLYAFDKSKQSWKERGRGTLRLNDSKS--DGSGQSRIVMRTQGSLRVILNTKIWPGMTVEKVSEKS 78

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 6466466  473 IRITAMDTEDQgVKVFLISASSKDTGQLYAALHHRI 508
Cdd:cd13180  79 LRITAMDDEGQ-VKVFLLQASPEDAKQLYNAIQDRI 113
 
Name Accession Description Interval E-value
RanBD_RanBP3 cd13180
Ran-binding protein 3 Ran-binding domain; RanBP3, a Ran-interacting nuclear protein, unlike ...
 393-508 3.76e-61

Ran-binding protein 3 Ran-binding domain; RanBP3, a Ran-interacting nuclear protein, unlike the related proteins RanBP1 and RanBP2, which promote disassembly of the export complex in the cytosol, acts as a CRM1 cofactor, enhancing nuclear export signal (NES) export by stabilizing the export complex in the nucleus. CRM1/Exportin1 is responsible for exporting many proteins and ribonucleoproteins from the nucleus to the cytosol. RanBP3 also alters the cargo selectivity of CRM1, promoting recognition of the NES of HIV-1 Rev and of other cargos while deterring recognition of the import adaptor protein Snurportin1. RanBP3 contains a N-terminal nuclear localization signal (NLS), 2 FxFG motifs, and a single RanBD. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.


Pssm-ID: 270001  Cd Length: 113  Bit Score: 197.45  E-value: 3.76e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAStdDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKS 472
Cdd:cd13180   1 TGEEGETNVFQVNCKLYAFDKSKQSWKERGRGTLRLNDSKS--DGSGQSRIVMRTQGSLRVILNTKIWPGMTVEKVSEKS 78

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 6466466  473 IRITAMDTEDQgVKVFLISASSKDTGQLYAALHHRI 508
Cdd:cd13180  79 LRITAMDDEGQ-VKVFLLQASPEDAKQLYNAIQDRI 113
RanBD smart00160
Ran-binding domain; Domain of apporximately 150 residues that stabilises the GTP-bound form of ...
 386-496 2.39e-19

Ran-binding domain; Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).


Pssm-ID: 197549  Cd Length: 130  Bit Score: 84.36  E-value: 2.39e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466     386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNdmASTDDGTlQSRLVMRTQGSLRLILNTKLWAQMQI 465
Cdd:smart00160   7 LPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKIL--KSKDNGG-KVRIVMRRDGVLKVCANHPIFKSMTL 83

                           90       100       110
                   ....*....|....*....|....*....|...
gi 6466466     466 D--KASEKSIRITAMDTEDQGVKVFLISASSKD 496
Cdd:smart00160  84 KplAGSNRALKWTPEDFADDIPKLVLYAVRFKT 116
Ran_BP1 pfam00638
RanBP1 domain;
390-501 7.68e-12

RanBP1 domain;


Pssm-ID: 395513 [Multi-domain]  Cd Length: 122  Bit Score: 62.45  E-value: 7.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466    390 EVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNdmASTDDGtlQSRLVMRTQGSLRLILNTKLWAQMQID--K 467
Cdd:pfam00638   1 EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL--KNKDDG--KVRILMRRDQVLKVCANHYITPDMTLKplA 76

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 6466466    468 ASEKSIRITAMDTEDQGVKVFL--ISASSKDTGQLY 501
Cdd:pfam00638  77 GSDRSWVWTAADFADGEGKPEQlaIRFKTKEEADSF 112
YRB1 COG5171
Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion];
386-456 3.51e-06

Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion];


Pssm-ID: 227499  Cd Length: 211  Bit Score: 48.09  E-value: 3.51e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6466466  386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDdgtlQSRLVMRTQGSLRLILN 456
Cdd:COG5171  77 LQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTN----KARITMRRDKTLKLCAN 143
 
Name Accession Description Interval E-value
RanBD_RanBP3 cd13180
Ran-binding protein 3 Ran-binding domain; RanBP3, a Ran-interacting nuclear protein, unlike ...
 393-508 3.76e-61

Ran-binding protein 3 Ran-binding domain; RanBP3, a Ran-interacting nuclear protein, unlike the related proteins RanBP1 and RanBP2, which promote disassembly of the export complex in the cytosol, acts as a CRM1 cofactor, enhancing nuclear export signal (NES) export by stabilizing the export complex in the nucleus. CRM1/Exportin1 is responsible for exporting many proteins and ribonucleoproteins from the nucleus to the cytosol. RanBP3 also alters the cargo selectivity of CRM1, promoting recognition of the NES of HIV-1 Rev and of other cargos while deterring recognition of the import adaptor protein Snurportin1. RanBP3 contains a N-terminal nuclear localization signal (NLS), 2 FxFG motifs, and a single RanBD. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.


Pssm-ID: 270001  Cd Length: 113  Bit Score: 197.45  E-value: 3.76e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAStdDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKS 472
Cdd:cd13180   1 TGEEGETNVFQVNCKLYAFDKSKQSWKERGRGTLRLNDSKS--DGSGQSRIVMRTQGSLRVILNTKIWPGMTVEKVSEKS 78

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 6466466  473 IRITAMDTEDQgVKVFLISASSKDTGQLYAALHHRI 508
Cdd:cd13180  79 LRITAMDDEGQ-VKVFLLQASPEDAKQLYNAIQDRI 113
RanBD_family cd00835
Ran-binding domain; The RanBD is present in RanBP1, RanBP2, RanBP3, Nuc2, and Nuc50. Most of ...
 393-506 5.98e-28

Ran-binding domain; The RanBD is present in RanBP1, RanBP2, RanBP3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBP2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The RanBD proteins of the nuclear pore complex (NPC): nucleoporin 1 (NUP1), NUP2, NUP61, and Nuclear Pore complex Protein 9 (npp-9) are present in the parent, but specific models were not made due to lineage. To date there been no reports of inositol phosphate or phosphoinositide binding by Ran-binding proteins.


Pssm-ID: 269907 [Multi-domain]  Cd Length: 118  Bit Score: 108.07  E-value: 5.98e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDdgtlQSRLVMRTQGSLRLILNTKLWAQMQIDK--ASE 470
Cdd:cd00835   1 TGEENEEVLFEKRAKLFRFDKETKEWKERGVGDLKILKNKDTG----KYRIVMRRDQVLKLCCNHYILPDMKLTKmgNND 76

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 6466466  471 KSIRITAMDTEDQG---VKVFLIS-ASSKDTGQLYAALHH 506
Cdd:cd00835  77 RAWVWTAMDDSEDGegkPETFAVRfKTAEDAEEFKKAFEE 116
RanBD smart00160
Ran-binding domain; Domain of apporximately 150 residues that stabilises the GTP-bound form of ...
 386-496 2.39e-19

Ran-binding domain; Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).


Pssm-ID: 197549  Cd Length: 130  Bit Score: 84.36  E-value: 2.39e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466     386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNdmASTDDGTlQSRLVMRTQGSLRLILNTKLWAQMQI 465
Cdd:smart00160   7 LPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKIL--KSKDNGG-KVRIVMRRDGVLKVCANHPIFKSMTL 83

                           90       100       110
                   ....*....|....*....|....*....|...
gi 6466466     466 D--KASEKSIRITAMDTEDQGVKVFLISASSKD 496
Cdd:smart00160  84 KplAGSNRALKWTPEDFADDIPKLVLYAVRFKT 116
RanBD_NUP50_plant cd13169
Ran-binding protein 2, repeat 1; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa ...
 393-473 5.59e-16

Ran-binding protein 2, repeat 1; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP#importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The first RanBD2 is present in this hierarchy.


Pssm-ID: 269990  Cd Length: 117  Bit Score: 74.02  E-value: 5.59e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFdkTSQSWVERGRGLLRLNdmASTDDGtlQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKS 472
Cdd:cd13169   1 TGEENEKAVFSGDGALFEF--IDGGWKERGKGELRVN--LSTTTG--QARLVMRARGNYRLILNANLYPDMKLTKMGGKG 74


                .
gi 6466466  473 I 473
Cdd:cd13169  75 V 75
RanBD_NUP50 cd13170
Nucleoporin 50 Ran-binding domain; NUP50 acts as a cofactor for the importin-alpha: ...
 393-490 1.91e-12

Nucleoporin 50 Ran-binding domain; NUP50 acts as a cofactor for the importin-alpha:importin-beta heterodimer, which allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. It is thought to function primarily at the terminal stages of nuclear protein import to coordinate import complex disassembly and importin recycling. NUP50 is composed of a N-terminal NUP50 domain which binds the C-terminus of importin-beta, a central domain which binds importin-beta, and a C-terminal RanBD which binds importin-beta through Ran-GTP. NUP50:importin-alpha then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to displace nuclear localization signals from importin-alpha. NUP50 interacts with cyclin-dependent kinase inhibitor 1B which binds to cyclin E-CDK2 or cyclin D-CDK4 complexes and prevents its activation, thereby controling the cell cycle progression at G1. Fungal Nup2 transiently associates with nuclear pore complexes (NPCs) and when artificially tethered to DNA, can prevent the spread of transcriptional activation or repression between flanking genes, a function termed boundary activity (BA). Nup2 and the Ran guanylyl-nucleotide exchange factor, Prp20, interact at specific chromatin regions and enable the NPC to play an active role in chromatin organization. Nup60p, the nup responsible for anchoring Nup2 and the Mlp proteins to the NPC is required for Nup2-dependent BA. Nup2 contains an N-terminal Nup50 family domain and a C-terminal RanBD. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.


Pssm-ID: 269991  Cd Length: 111  Bit Score: 63.78  E-value: 1.91e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSqSWVERGRGLLRLNdmasTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIdKASEKS 472
Cdd:cd13170   1 AGEEEEDTVFEVRAKLFKKKDDG-EWKDKGVGTLRLK----KHKTTGKARILVRADTLGKILLNFLLYKGMPY-SVAGKN 74

                        90
                ....*....|....*...
gi 6466466  473 IRITAMDTEDQGVKVFLI 490
Cdd:cd13170  75 NVFVGCVPNPGKPVTYLL 92
Ran_BP1 pfam00638
RanBP1 domain;
390-501 7.68e-12

RanBP1 domain;


Pssm-ID: 395513 [Multi-domain]  Cd Length: 122  Bit Score: 62.45  E-value: 7.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466    390 EVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNdmASTDDGtlQSRLVMRTQGSLRLILNTKLWAQMQID--K 467
Cdd:pfam00638   1 EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL--KNKDDG--KVRILMRRDQVLKVCANHYITPDMTLKplA 76

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 6466466    468 ASEKSIRITAMDTEDQGVKVFL--ISASSKDTGQLY 501
Cdd:pfam00638  77 GSDRSWVWTAADFADGEGKPEQlaIRFKTKEEADSF 112
RanBD_RanBP1 cd13179
Ran-binding domain; RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not ...
 386-489 1.18e-10

Ran-binding domain; RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not activate GTPase activity of Ran, but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RanGAP1). In both mammalian cells and in yeast, RanBP1 acts as a negative regulator of Regulator of chromosome condensation 1 (RCC1) by inhibiting RCC1-stimulated guanine nucleotide release from Ran. In addition to Ran, RanBP1 has been shown to interact with Exportin-1 and Importin subunit beta-1 which docks the NPC at the cytoplasmic side of the nuclear pore complex. RabBP1 contains a single RanBD. The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.


Pssm-ID: 270000 [Multi-domain]  Cd Length: 136  Bit Score: 59.50  E-value: 1.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQS--WVERGRGLLRLndMASTDDGTLqsRLVMRTQGSLRLILNTKL--WA 461
Cdd:cd13179  10 LPEVEVKTGEEDEEVLFKMRAKLYRFDTENDPpeWKERGTGDVKL--LKHKETKKI--RLLMRRDKTLKICANHYItpEM 85

                        90       100
                ....*....|....*....|....*...
gi 6466466  462 QMQIDKASEKSIRITAMDTEDQGVKVFL 489
Cdd:cd13179  86 KLKPNAGSDRAWVWTCADFADEEPKPEL 113
RanBD3_RanBP2-like cd14685
Ran-binding protein 2, Ran binding domain repeat 3; RanBP2 (also called E3 SUMO-protein ligase ...
 393-487 3.75e-09

Ran-binding protein 2, Ran binding domain repeat 3; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeats 3 is present in this hierarchy.


Pssm-ID: 270204  Cd Length: 117  Bit Score: 54.59  E-value: 3.75e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLndMASTDdgTLQSRLVMRTQGSLRLILNTKLWAQMQID--KASE 470
Cdd:cd14685   1 SGEENEQVVFSHRAKLYRYDKDAAQWKERGIGDLKI--LQNYD--NKQVRLVMRRDQVLKLCANHRITADMKLQpmKGSE 76

                        90
                ....*....|....*..
gi 6466466  471 KSIRITAMDTEDQGVKV 487
Cdd:cd14685  77 RAWVWTAMDFAEGEGKI 93
RanBD_NUP2 cd13181
Nucleoporin 2 Ran-binding domain; Yeast protein Nup2 transiently associates with Nuclear pore ...
 393-499 4.33e-09

Nucleoporin 2 Ran-binding domain; Yeast protein Nup2 transiently associates with Nuclear pore complexes (NPCs) and when artificially tethered to DNA, can prevent the spread of transcriptional activation or repression between flanking genes, a function termed boundary activity (BA). Nup2 and the Ran guanylyl-nucleotide exchange factor, Prp20, interact at specific chromatin regions and enable the NPC to play an active role in chromatin organization. Nup60p, the nup responsible for anchoring Nup2 and the Mlp proteins to the NPC is required for Nup2-dependent BA. Nup2 contains an N-terminal Nup50 family domain and a C-terminal RanBD. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity.


Pssm-ID: 270002  Cd Length: 115  Bit Score: 54.37  E-value: 4.33e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFD--KTSQSWVERGRGLLRLndMASTDDGtlQSRLVMRTQGSLRLILNTKLWAQMQIDK-AS 469
Cdd:cd13181   1 TGEENEEVLYTKRAKLMLFDpsNTESPYTSKGVGELKL--LKNKDTG--KSRILVRAEGSLRVLLNTLVLKDVKYEKmGN 76

                        90       100       110
                ....*....|....*....|....*....|
gi 6466466  470 EKSIRITAMDtEDQGVKVFLISASSKDTGQ 499
Cdd:cd13181  77 GSLVRVPTIN-SDGKIETYVIKVKTAADGE 105
RanBD3_RanBP2_insect-like cd13173
Ran-binding protein 2, Ran binding domain repeat 3; RanBP2 (also called E3 SUMO-protein ligase ...
 393-482 2.31e-07

Ran-binding protein 2, Ran binding domain repeat 3; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 3 is present in this hierarchy.


Pssm-ID: 269994  Cd Length: 115  Bit Score: 49.40  E-value: 2.31e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKtsQSWVERGRG---LLRLNDmastddgTLQSRLVMRTQGSLRLILNTKLWAQMQIDKAS 469
Cdd:cd13173   1 TGEEDEEVLYSHRAKLFRFVD--KEWKERGLGdvkILRHKE-------TGKLRLLMRRDQVLKICLNHALTEELEFRKKD 71

                        90
                ....*....|...
gi 6466466  470 EKSIRITAMDTED 482
Cdd:cd13173  72 EKSWMWAAHDFSE 84
RanBD2_RanBP2_insect-like cd13172
Ran-binding protein 2, Ran binding domain repeat 2; RanBP2 (also called E3 SUMO-protein ligase ...
 393-487 7.20e-07

Ran-binding protein 2, Ran binding domain repeat 2; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 2 is present in this hierarchy.


Pssm-ID: 269993  Cd Length: 118  Bit Score: 48.22  E-value: 7.20e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNdMASTDDGTLqsRLVMRTQGSLRLILNTKLWAQMQIDKA--SE 470
Cdd:cd13172   1 TGEENEEVLFEHRAKLLRFDKATKEWKERGLGNIKLL-RNKEDNNKV--RLLMRREQVLKVCCNQRLTKDMEFKYLtnNP 77

                        90
                ....*....|....*..
gi 6466466  471 KSIRITAMDTEDQGVKV 487
Cdd:cd13172  78 KALTWCAQDYSEGELKP 94
RanBD2_RanBP2-like cd13177
Ran-binding protein 2, Ran binding domain repeat 2; RanBP2 (also called E3 SUMO-protein ligase ...
 393-495 9.63e-07

Ran-binding protein 2, Ran binding domain repeat 2; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeat 2 is present in this hierarchy.


Pssm-ID: 269998 [Multi-domain]  Cd Length: 117  Bit Score: 47.73  E-value: 9.63e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLndMASTDDGTLqsRLVMRTQGSLRLILNTKLWAQMQID--KASE 470
Cdd:cd13177   1 TGEEDEKALYSQRVKLFRFDASVSQWKERGVGNLKI--LKNAVNGKL--RMLMRREQVLKVCANHWITTTMNLKplAGSD 76

                        90       100
                ....*....|....*....|....*
gi 6466466  471 KSIRITAMDTEDQGVKVFLISASSK 495
Cdd:cd13177  77 RAWMWMANDFSDGDAKLEQLAAKFK 101
RanBD1_RanBP2-like cd14684
Ran-binding protein 2, Ran binding domain repeat 1; RanBP2 (also called E3 SUMO-protein ligase ...
 393-483 2.60e-06

Ran-binding protein 2, Ran binding domain repeat 1; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeat 1 is present in this hierarchy.


Pssm-ID: 270203 [Multi-domain]  Cd Length: 117  Bit Score: 46.56  E-value: 2.60e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLndMASTDDGTLqsRLVMRTQGSLRLILNTKLWAQMQI--DKASE 470
Cdd:cd14684   1 TGEEDEEEMFCNRAKLFRFDVETKEWKERGIGNVKI--LRHKTSGKI--RLLMRREQVLKICANHYISADMKLkpNAGSD 76

                        90
                ....*....|...
gi 6466466  471 KSIRITAMDTEDQ 483
Cdd:cd14684  77 KSFVWNALDYADE 89
RanBD_RanBP2-like cd13176
Ran-binding protein 2, Ran binding domains; RanBP2 (also called E3 SUMO-protein ligase RanBP2, ...
 393-487 3.47e-06

Ran-binding protein 2, Ran binding domains; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeats 1 and 3 are present in this hierarchy.


Pssm-ID: 269997 [Multi-domain]  Cd Length: 117  Bit Score: 46.12  E-value: 3.47e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLndMASTDDGtlQSRLVMRTQGSLRLILNTKLWAQMQI--DKASE 470
Cdd:cd13176   1 TGEEDEEVLFSHRAKLYRFDKDVKQWKERGVGDIKI--LQHKTTG--RIRILMRRDQVLKVCANHYITPDMKLkpNAGSD 76

                        90
                ....*....|....*..
gi 6466466  471 KSIRITAMDTEDQGVKV 487
Cdd:cd13176  77 RSWVWTALDFSEEEPKV 93
YRB1 COG5171
Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion];
386-456 3.51e-06

Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion];


Pssm-ID: 227499  Cd Length: 211  Bit Score: 48.09  E-value: 3.51e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6466466  386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDdgtlQSRLVMRTQGSLRLILN 456
Cdd:COG5171  77 LQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTN----KARITMRRDKTLKLCAN 143
RanBD4_RanBP2_insect-like cd13174
Ran-binding protein 2, Ran binding domain repeat 4; RanBP2 (also called E3 SUMO-protein ligase ...
 393-484 1.33e-05

Ran-binding protein 2, Ran binding domain repeat 4; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 4 is present in this hierarchy.


Pssm-ID: 269995  Cd Length: 118  Bit Score: 44.71  E-value: 1.33e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLndMASTDDGTLqsRLVMRTQGSLRLILNTKLWAQMQID--KASE 470
Cdd:cd13174   1 TGEEDETKLFGERAKLYRFDADTKEWKERGVGEMKI--LYHPELNTY--RLLMRREQVHKVVLNMLITSDLQLRpmNTSD 76

                        90
                ....*....|....
gi 6466466  471 KSIRITAMDTEDQG 484
Cdd:cd13174  77 KSFTWGGMNYAEDA 90
RanBD1_RanBP2_insect-like cd13171
Ran-binding protein 2, Ran binding domain repeat 1; RanBP2 (also called E3 SUMO-protein ligase ...
 393-485 8.57e-04

Ran-binding protein 2, Ran binding domain repeat 1; RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 1 is present in this hierarchy.


Pssm-ID: 269992  Cd Length: 117  Bit Score: 39.37  E-value: 8.57e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6466466  393 TGEEAESNVLQMQCKLFVFdkTSQSWVERGRGLLRLndMASTDDGtlQSRLVMRTQGSLRLILNTKLWAQMQID--KASE 470
Cdd:cd13171   1 TGEENEEVLFCARAKLFRY--VDKEWKERGIGNLKI--LKNPATG--KVRLLMRREQVHKVCANHFITKDMELTpmKKED 74

                        90
                ....*....|....*
gi 6466466  471 KSIRITAMDTEDQGV 485
Cdd:cd13171  75 KAYIWAANDFADEVV 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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