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Conserved domains on  [gi|226874911|ref|NP_035925|]
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C1q-related factor precursor [Mus musculus]

Protein Classification

complement C1q domain-containing protein( domain architecture ID 10448922)

complement C1q domain-containing protein may be involved in the regulation of the inflammatory network

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
C1q pfam00386
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ...
131-255 1.46e-45

C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.


:

Pssm-ID: 395310 [Multi-domain]  Cd Length: 126  Bit Score: 148.97  E-value: 1.46e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226874911  131 AFYAGLKNPHEGYE--VLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLmrGGDGTSMWADLCKNGQVRASAIAQD 208
Cdd:pfam00386   1 AFSAGRTTGLTAPNeqPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHIT--TVDGKSLYVSLVKNGQEVVSFYDQP 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 226874911  209 ADQNYDYASNSVILHLDAGDEVFIKLDGGKA-HGGNSNKYSTFSGFII 255
Cdd:pfam00386  79 QKGSLDVASGSVVLELQRGDEVWLQLTGYNGlYYDGSDTDSTFSGFLL 126
 
Name Accession Description Interval E-value
C1q pfam00386
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ...
131-255 1.46e-45

C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.


Pssm-ID: 395310 [Multi-domain]  Cd Length: 126  Bit Score: 148.97  E-value: 1.46e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226874911  131 AFYAGLKNPHEGYE--VLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLmrGGDGTSMWADLCKNGQVRASAIAQD 208
Cdd:pfam00386   1 AFSAGRTTGLTAPNeqPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHIT--TVDGKSLYVSLVKNGQEVVSFYDQP 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 226874911  209 ADQNYDYASNSVILHLDAGDEVFIKLDGGKA-HGGNSNKYSTFSGFII 255
Cdd:pfam00386  79 QKGSLDVASGSVVLELQRGDEVWLQLTGYNGlYYDGSDTDSTFSGFLL 126
C1Q smart00110
Complement component C1q domain; Globular domain found in many collagens and eponymously in ...
124-258 3.33e-33

Complement component C1q domain; Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.


Pssm-ID: 128420  Cd Length: 135  Bit Score: 117.40  E-value: 3.33e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226874911   124 YTTVPRVAFYAGL-KNPHEGYEVLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRggdGTSMWADLCKNGQVRA 202
Cdd:smart00110   2 YKAQPRSAFSVIRsNRPPPPGQPIRFDKVLYNQQGHYDPRTGKFTCPVPGVYYFSYHVESK---GRNVKVSLMKNGIQVM 78
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 226874911   203 SAIAQDADQNYDYASNSVILHLDAGDEVFIKLDGGKAHG-GNSNKYSTFSGFIIYSD 258
Cdd:smart00110  79 STYDEYQKGLYDVASGGALLQLRQGDQVWLELPDEKNGLyAGEYVDSTFSGFLLFPD 135
 
Name Accession Description Interval E-value
C1q pfam00386
C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement ...
131-255 1.46e-45

C1q domain; C1q is a subunit of the C1 enzyme complex that activates the serum complement system.


Pssm-ID: 395310 [Multi-domain]  Cd Length: 126  Bit Score: 148.97  E-value: 1.46e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226874911  131 AFYAGLKNPHEGYE--VLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLmrGGDGTSMWADLCKNGQVRASAIAQD 208
Cdd:pfam00386   1 AFSAGRTTGLTAPNeqPVRFDKVLTNIGGHYDPATGKFTCPVPGVYYFSYHIT--TVDGKSLYVSLVKNGQEVVSFYDQP 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 226874911  209 ADQNYDYASNSVILHLDAGDEVFIKLDGGKA-HGGNSNKYSTFSGFII 255
Cdd:pfam00386  79 QKGSLDVASGSVVLELQRGDEVWLQLTGYNGlYYDGSDTDSTFSGFLL 126
C1Q smart00110
Complement component C1q domain; Globular domain found in many collagens and eponymously in ...
124-258 3.33e-33

Complement component C1q domain; Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.


Pssm-ID: 128420  Cd Length: 135  Bit Score: 117.40  E-value: 3.33e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226874911   124 YTTVPRVAFYAGL-KNPHEGYEVLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRggdGTSMWADLCKNGQVRA 202
Cdd:smart00110   2 YKAQPRSAFSVIRsNRPPPPGQPIRFDKVLYNQQGHYDPRTGKFTCPVPGVYYFSYHVESK---GRNVKVSLMKNGIQVM 78
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 226874911   203 SAIAQDADQNYDYASNSVILHLDAGDEVFIKLDGGKAHG-GNSNKYSTFSGFIIYSD 258
Cdd:smart00110  79 STYDEYQKGLYDVASGGALLQLRQGDQVWLELPDEKNGLyAGEYVDSTFSGFLLFPD 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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