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Conserved domains on  [gi|6755951|ref|NP_036041|]
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vomeronasal type-1 receptor 49 [Mus musculus]

Protein Classification

G protein-coupled receptor family protein; olfactory receptor( domain architecture ID 11599633)

G protein-coupled receptor family protein is a seven-transmembrane G protein-coupled receptor (7TM-GPCR) family protein which typically transmits an extracellular signal into the cell by the conformational rearrangement of the 7TM helices and by the subsequent binding and activation of an intracellular heterotrimeric G protein; GPCR ligands include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters; olfactory receptor plays a central role in olfaction or the sense of smell, similar to human family 6 olfactory receptors; belongs to the class A rhodopsin-like family of G protein-coupled receptors; binding of an odorant to the olfactory receptor induces a conformational change that leads to the activation of the olfactory-specific G protein (Golf)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
11-305 9.96e-156

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


:

Pssm-ID: 320087  Cd Length: 295  Bit Score: 437.09  E-value: 9.96e-156
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951   11 NNMKIILFSEVSVGISANTILFFARLCKLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIY 90
Cdd:cd13949   1 SNIRITFFSEVGVGISANSILLLFHIFMFFRGHRPRSTDLIIGHLSLIHLLLLLTMGIIATDAFFSWGGWDDITCKFLIY 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951   91 LHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQ 170
Cdd:cd13949  81 LHRVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQ 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951  171 SCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVL 250
Cdd:cd13949 161 SCSILPMSYSMQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSLSPKASPEQRATQTILLLMSFFVVM 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*
gi 6755951  251 YILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWESIFG 305
Cdd:cd13949 241 YILDSIVFYSRTKFKNDSILYCVQIIVSHSYATVSPFVFLMTEKHIIKFLRSMCG 295
 
Name Accession Description Interval E-value
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
11-305 9.96e-156

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


Pssm-ID: 320087  Cd Length: 295  Bit Score: 437.09  E-value: 9.96e-156
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951   11 NNMKIILFSEVSVGISANTILFFARLCKLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIY 90
Cdd:cd13949   1 SNIRITFFSEVGVGISANSILLLFHIFMFFRGHRPRSTDLIIGHLSLIHLLLLLTMGIIATDAFFSWGGWDDITCKFLIY 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951   91 LHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQ 170
Cdd:cd13949  81 LHRVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQ 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951  171 SCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVL 250
Cdd:cd13949 161 SCSILPMSYSMQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSLSPKASPEQRATQTILLLMSFFVVM 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*
gi 6755951  251 YILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWESIFG 305
Cdd:cd13949 241 YILDSIVFYSRTKFKNDSILYCVQIIVSHSYATVSPFVFLMTEKHIIKFLRSMCG 295
V1R pfam03402
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
12-302 9.63e-147

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


Pssm-ID: 460912  Cd Length: 292  Bit Score: 414.04  E-value: 9.63e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951     12 NMKIILFSEVSVGISANTILFFARLCKLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYL 91
Cdd:pfam03402   2 NIGIIFFSEVGVGISANSILLLFHIFMFFTGHRLRPTDLIIGHLSLIHLLMLLTMGIIAMDAFGSQGRWDDTTCKFLIYL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951     92 HRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQS 171
Cdd:pfam03402  82 HRVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951    172 CSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLY 251
Cdd:pfam03402 162 CSILPMSYSMQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSLSPKASPEQRATRTILLLMSFFVVMY 241
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6755951    252 ILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWES 302
Cdd:pfam03402 242 ILDSIVSYSRTMFKNDSIFYCVQILVSHSYATVSPFVLISTEKRIIKFLRS 292
 
Name Accession Description Interval E-value
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
11-305 9.96e-156

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


Pssm-ID: 320087  Cd Length: 295  Bit Score: 437.09  E-value: 9.96e-156
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951   11 NNMKIILFSEVSVGISANTILFFARLCKLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIY 90
Cdd:cd13949   1 SNIRITFFSEVGVGISANSILLLFHIFMFFRGHRPRSTDLIIGHLSLIHLLLLLTMGIIATDAFFSWGGWDDITCKFLIY 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951   91 LHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQ 170
Cdd:cd13949  81 LHRVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQ 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951  171 SCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVL 250
Cdd:cd13949 161 SCSILPMSYSMQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSLSPKASPEQRATQTILLLMSFFVVM 240
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*
gi 6755951  251 YILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWESIFG 305
Cdd:cd13949 241 YILDSIVFYSRTKFKNDSILYCVQIIVSHSYATVSPFVFLMTEKHIIKFLRSMCG 295
V1R pfam03402
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
12-302 9.63e-147

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


Pssm-ID: 460912  Cd Length: 292  Bit Score: 414.04  E-value: 9.63e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951     12 NMKIILFSEVSVGISANTILFFARLCKLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYL 91
Cdd:pfam03402   2 NIGIIFFSEVGVGISANSILLLFHIFMFFTGHRLRPTDLIIGHLSLIHLLMLLTMGIIAMDAFGSQGRWDDTTCKFLIYL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951     92 HRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQS 171
Cdd:pfam03402  82 HRVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755951    172 CSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLY 251
Cdd:pfam03402 162 CSILPMSYSMQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSLSPKASPEQRATRTILLLMSFFVVMY 241
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6755951    252 ILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWES 302
Cdd:pfam03402 242 ILDSIVSYSRTMFKNDSIFYCVQILVSHSYATVSPFVLISTEKRIIKFLRS 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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