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Conserved domains on  [gi|11466843|ref|NP_039440|]
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hypothetical protein OrsajCp084 (plastid) [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06075 super family cl21493
NADH-quinone oxidoreductase subunit D;
1-54 1.10e-36

NADH-quinone oxidoreductase subunit D;


The actual alignment was detected with superfamily member CHL00017:

Pssm-ID: 473883  Cd Length: 393  Bit Score: 125.19  E-value: 1.10e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 11466843    1 MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
Cdd:CHL00017   1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
 
Name Accession Description Interval E-value
ndhH CHL00017
NADH dehydrogenase subunit 7
 1-54 1.10e-36

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 125.19  E-value: 1.10e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 11466843    1 MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
Cdd:CHL00017   1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 7-55 7.39e-28

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 101.69  E-value: 7.39e-28
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 11466843   7 RKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIG 55
Cdd:COG0649   3 ETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLA 51
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 9-55 1.82e-21

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 84.31  E-value: 1.82e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 11466843     9 DLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIG 55
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLA 47
 
Name Accession Description Interval E-value
ndhH CHL00017
NADH dehydrogenase subunit 7
 1-54 1.10e-36

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 125.19  E-value: 1.10e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 11466843    1 MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
Cdd:CHL00017   1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
 1-56 1.99e-31

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 111.37  E-value: 1.99e-31
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 11466843    1 MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIGK 56
Cdd:PRK07415   1 MAQLETRTEPMVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAE 56
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 7-55 7.39e-28

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 101.69  E-value: 7.39e-28
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 11466843   7 RKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIG 55
Cdd:COG0649   3 ETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLA 51
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
6-55 4.27e-22

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 85.98  E-value: 4.27e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 11466843    6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIG 55
Cdd:PRK06075   2 AEIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLA 51
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
6-54 6.25e-22

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 85.53  E-value: 6.25e-22
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11466843    6 TRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
Cdd:PRK12322   2 LRTEEMLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKL 50
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 9-55 1.82e-21

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 84.31  E-value: 1.82e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 11466843     9 DLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIG 55
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLA 47
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 9-55 1.50e-19

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 79.58  E-value: 1.50e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 11466843    9 DLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIG 55
Cdd:PRK11742 190 DFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMG 236
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
8-56 2.17e-16

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 70.58  E-value: 2.17e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11466843    8 KDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIGK 56
Cdd:PRK13292 402 EETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGE 450
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-54 4.57e-11

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 55.36  E-value: 4.57e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 11466843   8 KDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKI 54
Cdd:COG3261 120 EGVHEIPVGPVHAGLIEPGHFRFSVEGERILDLEIRLGYVHRGIEKL 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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