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Conserved domains on  [gi|19923475|ref|NP_057023|]
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tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform 1 [Homo sapiens]

Protein Classification

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6( domain architecture ID 10514648)

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 is the substrate-binding subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gcd10p pfam04189
Gcd10p family; eIF-3 is a multi-subunit complex that stimulates translation initiation in ...
 19-252 1.06e-80

Gcd10p family; eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.


:

Pssm-ID: 461216  Cd Length: 295  Bit Score: 252.86  E-value: 1.06e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475    19 RIRDGDFVVLK-REDVFKAVQVQRRKKVTFEKQW-FYLDNVIGHSYGTAFEVTSGGSLQPKKK-----REEPTAETKEA- 90
Cdd:pfam04189   1 VIRPNQHVILRlPSGNLKIVQLKPNTTISLGKFGsFPVNLIIGRPYGLTFEILDKRGEESFSKlrvvpAAELHAESLAEe 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475    91 ------------GTDNRNIVDDGKSQKLTQDDIKALKDKGIK-GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAI 157
Cdd:pfam04189  81 eadseegegevsSRDNRNIIDDGSRQKLTMEEIEELKKQGASaGKEIIAKLIESHTTFDQKTAFSQEKYLKRKKKKYLKR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475   158 ITVVKPSTRILSIMYYA-REPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGG--FGSIIQLYPGG 234
Cdd:pfam04189 161 FTVLPLDVSLLLEYYLEkKDPQKILDLREETLGLLLTWANVHPGGRYLVVDETGGLLVAAMAERMGGatTGTITVIHPNE 240

                         250
                  ....*....|....*....
gi 19923475   235 GPVRAATACFGF-PKSFLS 252
Cdd:pfam04189 241 QPNLSLLKYFNYdPEHPLD 259
 
Name Accession Description Interval E-value
Gcd10p pfam04189
Gcd10p family; eIF-3 is a multi-subunit complex that stimulates translation initiation in ...
 19-252 1.06e-80

Gcd10p family; eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.


Pssm-ID: 461216  Cd Length: 295  Bit Score: 252.86  E-value: 1.06e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475    19 RIRDGDFVVLK-REDVFKAVQVQRRKKVTFEKQW-FYLDNVIGHSYGTAFEVTSGGSLQPKKK-----REEPTAETKEA- 90
Cdd:pfam04189   1 VIRPNQHVILRlPSGNLKIVQLKPNTTISLGKFGsFPVNLIIGRPYGLTFEILDKRGEESFSKlrvvpAAELHAESLAEe 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475    91 ------------GTDNRNIVDDGKSQKLTQDDIKALKDKGIK-GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAI 157
Cdd:pfam04189  81 eadseegegevsSRDNRNIIDDGSRQKLTMEEIEELKKQGASaGKEIIAKLIESHTTFDQKTAFSQEKYLKRKKKKYLKR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475   158 ITVVKPSTRILSIMYYA-REPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGG--FGSIIQLYPGG 234
Cdd:pfam04189 161 FTVLPLDVSLLLEYYLEkKDPQKILDLREETLGLLLTWANVHPGGRYLVVDETGGLLVAAMAERMGGatTGTITVIHPNE 240

                         250
                  ....*....|....*....
gi 19923475   235 GPVRAATACFGF-PKSFLS 252
Cdd:pfam04189 241 QPNLSLLKYFNYdPEHPLD 259
 
Name Accession Description Interval E-value
Gcd10p pfam04189
Gcd10p family; eIF-3 is a multi-subunit complex that stimulates translation initiation in ...
 19-252 1.06e-80

Gcd10p family; eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.


Pssm-ID: 461216  Cd Length: 295  Bit Score: 252.86  E-value: 1.06e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475    19 RIRDGDFVVLK-REDVFKAVQVQRRKKVTFEKQW-FYLDNVIGHSYGTAFEVTSGGSLQPKKK-----REEPTAETKEA- 90
Cdd:pfam04189   1 VIRPNQHVILRlPSGNLKIVQLKPNTTISLGKFGsFPVNLIIGRPYGLTFEILDKRGEESFSKlrvvpAAELHAESLAEe 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475    91 ------------GTDNRNIVDDGKSQKLTQDDIKALKDKGIK-GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAI 157
Cdd:pfam04189  81 eadseegegevsSRDNRNIIDDGSRQKLTMEEIEELKKQGASaGKEIIAKLIESHTTFDQKTAFSQEKYLKRKKKKYLKR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19923475   158 ITVVKPSTRILSIMYYA-REPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGG--FGSIIQLYPGG 234
Cdd:pfam04189 161 FTVLPLDVSLLLEYYLEkKDPQKILDLREETLGLLLTWANVHPGGRYLVVDETGGLLVAAMAERMGGatTGTITVIHPNE 240

                         250
                  ....*....|....*....
gi 19923475   235 GPVRAATACFGF-PKSFLS 252
Cdd:pfam04189 241 QPNLSLLKYFNYdPEHPLD 259
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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