|
Name |
Accession |
Description |
Interval |
E-value |
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
2-662 |
0e+00 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 1121.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 2 KRRNADCSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLFIRSVYDSFRYQGLAFSVFFV 81
Cdd:pfam09726 1 KRRNADCSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLLIRSVYDSFKYQGLAFSVFFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 82 CVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSLWILFVYIEAAIRFKDLKNFHVDLCRPFAAHCIGY 161
Cdd:pfam09726 81 CIAFTSDIICLLFIPVQWLFFAASTYVWVQYVWHTEKGICLPTVSLWILFVYIEAAIRFKDLKNFHVDLCRPFAAHCIGY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 162 PVVTLGFGFKSYVSYKMRLRKQKEVQKENEFYMQLLQQALPPEQQMLQKQEKEAEEAAKGLPDMDSSILiHHNGGIPANK 241
Cdd:pfam09726 161 PVVTLGFGFKSYVSYKMRLRKQREVQKENEFYMQLLQQALPKEQQMLDRQERETSETAKGLSEVDPLAL-NQNGHSLNKK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 242 KLSTTLPEIEYREKGKEKDKDAKKH-NLGINNNNILQPVDSKIQEIEYMENHINSKRLNND-LVGSTENLLKEDSC---- 315
Cdd:pfam09726 240 DSTLQLPELEYREKKNSGTSSGSDSkKSHNHNIHNLNHVDSKLQEKEYMENHSNSKRLNIStSPGSEEDLLVRESVssks 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 316 ----TASSKNYKNAS----GVVNSSPRSHSATNGSIPSSSS-KNEKKQKC-TSKSPSTHKDLMENCIPNNQLSKPDALVR 385
Cdd:pfam09726 320 ssssSSSNKNYKNASggsaNSSNSSPRSHSHNSGSVTSSSSsKNSKKQKGpGGKSGARHKDPAENCIPNNQLSKPDALVR 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 386 LEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQE 465
Cdd:pfam09726 400 LEQDIKKLKAELQASRQTEQELRSQISSLTSLERSLKSELGQLRQENDLLQTKLHNAVSAKQKDKQTVQQLEKRLKAEQE 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 466 ARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELRKYK 545
Cdd:pfam09726 480 ARASAEKQLAEEKKRKKEEEATAARAVALAAASRGECTESLKQRKRELESEIKKLTHDIKLKEEQIRELEIKVQELRKYK 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 546 ENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAVMPSit 625
Cdd:pfam09726 560 ESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQIYQKDQEIKDLKQKIAEVMAVMPS-- 637
|
650 660 670
....*....|....*....|....*....|....*..
gi 31542661 626 ysaaTSPLSPVSPHYSSKFVETSPSGLDPNASVYQPL 662
Cdd:pfam09726 638 ----TSRITPVTPHYSSKFMDTSPSMRDPNASVYPPL 670
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
374-616 |
6.01e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 6.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 374 NNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNI 453
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 454 SQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTET------LRNRIRELEAEGKKLTMDMKVK 527
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALrealdeLRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 528 EDQIRELELKVQELRKYKEnekDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFS----ALGDAKRQLEIAQGQILQK 603
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIE---ELSEDIESLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELREL 906
|
250
....*....|...
gi 31542661 604 DQEIKDLKQKIAE 616
Cdd:TIGR02168 907 ESKRSELRRELEE 919
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
383-624 |
6.44e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 6.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 383 LVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKKLKA 462
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL-------ANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 463 EQEARSFVEKQLmEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELR 542
Cdd:TIGR02168 307 LRERLANLERQL-EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 543 -KYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAkrQLEIAQGQILQKDQEIKDLKQKIAEVMAVM 621
Cdd:TIGR02168 386 sKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEAL 463
|
...
gi 31542661 622 PSI 624
Cdd:TIGR02168 464 EEL 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
381-616 |
1.12e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 381 DALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKL 460
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 461 KAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIRELEAEGKKLTmdmKVKEDQIRELELKVQE 540
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---AAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31542661 541 ---LRKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:COG1196 410 ealLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
385-616 |
2.31e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 385 RLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKKLKAEQ 464
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL-------LAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 465 EARSFVEKQLmeekkrkkleeataaravafaaasrgectETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELR-K 543
Cdd:COG1196 309 ERRRELEERL-----------------------------EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEaE 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31542661 544 YKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
383-616 |
1.55e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 383 LVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKA 462
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 463 EQEARSFVEKQLmeekkrkkleeataaravafaaasrgectETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELR 542
Cdd:TIGR02168 864 LEELIEELESEL-----------------------------EALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31542661 543 KYKE--NEKDTEVLMsALSAMQDKTQHLENSLSAETRIKLDlfsalgDAKRQLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:TIGR02168 915 RELEelREKLAQLEL-RLEGLEVRIDNLQERLSEEYSLTLE------EAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
383-618 |
9.87e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 9.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 383 LVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNaVQMKQKD------KQNISQL 456
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK-LEEALNDlearlsHSRIPEI 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 457 EKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTEtLRNRIRELEAEGKKLTMDMKVKEDQIRELEL 536
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID-LKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 537 KVQELRK-YKENEKDTEVLMSALSAMQDKTQHLENSLSaetriklDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIA 615
Cdd:TIGR02169 876 ALRDLESrLGDLKKERDELEAQLRELERKIEELEAQIE-------KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
...
gi 31542661 616 EVM 618
Cdd:TIGR02169 949 EEL 951
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
385-616 |
1.59e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 385 RLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQ 464
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 465 EARSFVEKQLMEEKKRKkleeataaravafaaasrgectETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELRKY 544
Cdd:COG1196 379 EELEELAEELLEALRAA----------------------AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542661 545 KENEKDTEvlmsaLSAMQDKTQHLENSLSAETRIKLDLFSALGdAKRQLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:COG1196 437 EEEEEEAL-----EEAAEEEAELEEEEEALLELLAELLEEAAL-LEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
382-638 |
2.49e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 382 ALVRLEQDIKKLKADLQASRQVEQELRSQ--ISSLSSTERGIRSEMGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKK 459
Cdd:COG3206 176 ALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEA-------EARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 460 LKAEQEARSFVekqlmeekkrkkleeataaravafaaaSRGECTETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQ 539
Cdd:COG3206 249 LGSGPDALPEL---------------------------LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 540 ELRKYKENEKDTEV--LMSALSAMQDKTQHLENSLsAETRIKLDLFSA----LGDAKRQLEIAQG---QILQKDQEIkdl 610
Cdd:COG3206 302 ALRAQLQQEAQRILasLEAELEALQAREASLQAQL-AQLEARLAELPEleaeLRRLEREVEVARElyeSLLQRLEEA--- 377
|
250 260
....*....|....*....|....*...
gi 31542661 611 kqKIAEVMAVMPSITYSAATSPLSPVSP 638
Cdd:COG3206 378 --RLAEALTVGNVRVIDPAVVPLKPVSP 403
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
388-651 |
5.08e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 388 QDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKKLKA----E 463
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-------EQELAALEAELAElekeI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 464 QEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIREleaegKKLTMDMKVKEDQIRELELKVQELRK 543
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL-----KYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 544 YKENEKDTevLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAVMPS 623
Cdd:COG4942 168 ELEAERAE--LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250 260
....*....|....*....|....*....
gi 31542661 624 ITYSAATSPLS-PVSPHYSSKFVETSPSG 651
Cdd:COG4942 246 AGFAALKGKLPwPVSGRVVRRFGERDGGG 274
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
367-615 |
4.00e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 367 LMENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERgIRSEMGQLRQENELLQNKLhnAVQMK 446
Cdd:TIGR00618 205 LLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIEELRAQE--AVLEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 447 QKDKQNISQLEKKLKAEQEARSFVEKQlmeekkrkkleeataaravafaaasRGECTETLRNRIRELEAEGKKLTMDMKV 526
Cdd:TIGR00618 282 TQERINRARKAAPLAAHIKAVTQIEQQ-------------------------AQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 527 KEDQIRELELKVQELRKYKENEKDTEVLMSALsAMQDKTQHLENSLSAETRIK---LDLFSALGDAKRQLEIAQGQILQK 603
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIR-EISCQQHTLTQHIHTLQQQKttlTQKLQSLCKELDILQREQATIDTR 415
|
250
....*....|..
gi 31542661 604 DQEIKDLKQKIA 615
Cdd:TIGR00618 416 TSAFRDLQGQLA 427
|
|
| CarR_dom_SF |
TIGR03462 |
lycopene cyclase domain; This domain is often repeated twice within the same polypeptide, as ... |
29-113 |
4.70e-05 |
|
lycopene cyclase domain; This domain is often repeated twice within the same polypeptide, as is observed in Archaea, Thermus, Sphingobacteria and Fungi. In the fungal sequences, this tandem domain pair is observed as the N-terminal half of a bifunctional protein, where it has been characterized as a lycopene beta-cyclase and the C-terminal half is a phytoene synthetase. In Myxococcus and Actinobacterial genomes this domain appears as a single polypeptide, tandemly repeated and usually in a genomic context consistent with a role in carotenoid biosynthesis. It is unclear whether any of the sequences in this family truly encode lycopene epsilon cyclases. However a number are annotated as such. The domain is generally hydrophobic with a number of predicted membrane spanning segments and contains a distinctive motif (hPhEEhhhhhh). In certain sequences one of either the proline or glutamates may vary, but always one of the tandem pair appear to match this canonical sequence exactly.
Pssm-ID: 274590 Cd Length: 89 Bit Score: 42.20 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 29 FLYLKFLVVWALVLLA-DFVLEFRFEYLWPFWLFI------RSVYDSFryqGLAFSVFFVCVAFTSNiICLLFIPIQ-WL 100
Cdd:TIGR03462 1 YLYLGVLLVWALPVLAlLWVFRGPFLRLRALALALlialptFLVWDNL---AIRRGVWTYNPRYILG-IRLGDLPIEeFL 76
|
90
....*....|...
gi 31542661 101 FFAASTYVWVQYV 113
Cdd:TIGR03462 77 FFLLTPLLTVLWL 89
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
386-616 |
5.93e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 386 LEQDIKKLKADLQASRQVEQELRSQ----------ISSLSSTERGIRSEMGQLR---QENELLQNKLHNAVQMKQKDKQN 452
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKekeleevlreINEISSELPELREELEKLEkevKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 453 ISQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASrgECTETLRNRIRELEAEGKKLTMDMKVKEDQIR 532
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS--EFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 533 ELELKVQELR----KYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDlfsALGDAKRQLEIAQGQILQKDQEIK 608
Cdd:PRK03918 332 ELEEKEERLEelkkKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL---TPEKLEKELEELEKAKEEIEEEIS 408
|
....*...
gi 31542661 609 DLKQKIAE 616
Cdd:PRK03918 409 KITARIGE 416
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
381-613 |
7.70e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 7.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 381 DALVRLEQDIKKLkADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQEneLLQNKLHNAVQMKQKDKQNISQLEKKL 460
Cdd:COG4913 242 EALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 461 KAEQEARSFVEKQLMEekkrkkleeataaravafaaaSRGECTETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQE 540
Cdd:COG4913 319 DALREELDELEAQIRG---------------------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31542661 541 LRKykenekdtevlmsALSAMQDKTQHLENSLSAETRiklDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQK 613
Cdd:COG4913 378 SAE-------------EFAALRAEAAALLEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
436-620 |
4.66e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 436 QNKLHNAVQMKQKDKQNISQLEKKLKAEQEARSFVEKQLmeekkrkkleeataaravafaaasrgectETLRNRIRELEA 515
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-----------------------------AALERRIAALAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 516 EGKKLTMDMKVKEDQIRELELKVQELRKYKENEKdtEVLMSALSAMQdktqhlenSLSAETRIKLdLFSA--LGDAKRQL 593
Cdd:COG4942 70 RIRALEQELAALEAELAELEKEIAELRAELEAQK--EELAELLRALY--------RLGRQPPLAL-LLSPedFLDAVRRL 138
|
170 180
....*....|....*....|....*..
gi 31542661 594 EIAQGQILQKDQEIKDLKQKIAEVMAV 620
Cdd:COG4942 139 QYLKYLAPARREQAEELRADLAELAAL 165
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
383-617 |
7.59e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 383 LVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQnklhnavQMKQKDKQNISQLEKKLKA 462
Cdd:COG4372 75 LEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLE-------QQRKQLEAQIAELQSEIAE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 463 EQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIRELEAEGKKLtMDMKVKEDQIRELELKVQELR 542
Cdd:COG4372 148 REEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEA-EKLIESLPRELAEELLEAKDS 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542661 543 KYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEV 617
Cdd:COG4372 227 LEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALL 301
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
393-617 |
1.39e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 393 LKADLQA-----SRQVEQELRSQISSLSST-------ERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKL 460
Cdd:pfam12128 583 VKLDLKRidvpeWAASEEELRERLDKAEEAlqsarekQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEK 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 461 KAEQEArsfVEKQLMEEKKRKKLeeataaravafaaasrgectetlrnRIRELEAEGKKLTMDMKVKEDQIRE--LELKV 538
Cdd:pfam12128 663 QSEKDK---KNKALAERKDSANE-------------------------RLNSLEAQLKQLDKKHQAWLEEQKEqkREART 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 539 QELRKYKENEKDTEVLMSALSAMQDK--TQHLENSLSAETRIKLDLFSalgdakrqLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:pfam12128 715 EKQAYWQVVEGALDAQLALLKAAIAArrSGAKAELKALETWYKRDLAS--------LGVDPDVIAKLKREIRTLERKIER 786
|
.
gi 31542661 617 V 617
Cdd:pfam12128 787 I 787
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
352-621 |
1.54e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 352 KKQKCTSKSPSTHKDLMenCIPNNQLSKPDALVRLEqdIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQE 431
Cdd:pfam05483 481 EKEKLKNIELTAHCDKL--LLENKELTQEASDMTLE--LKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 432 nellqnklhnavqMKQKDKQNISQLEkklKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRgectetlrnRIR 511
Cdd:pfam05483 557 -------------FIQKGDEVKCKLD---KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNK---------NIE 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 512 ELEAEGKKLTMDMKVKEDQIRELELKVQELRkykenekdtevlmSALSAMQDKTQHLENSLSAETRI-KLDLFSALGDAK 590
Cdd:pfam05483 612 ELHQENKALKKKGSAENKQLNAYEIKVNKLE-------------LELASAKQKFEEIIDNYQKEIEDkKISEEKLLEEVE 678
|
250 260 270
....*....|....*....|....*....|..
gi 31542661 591 RQLEIAQGQI-LQKDQEIKdLKQKIAEVMAVM 621
Cdd:pfam05483 679 KAKAIADEAVkLQKEIDKR-CQHKIAEMVALM 709
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
179-624 |
2.02e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 179 RLRKQKEVQKENEFYMQLLQQALppeqqMLQKQEKEAEEAAKGLPDMDSSILIHHNGGIPANKKLSTTLPEIEyREKGKE 258
Cdd:TIGR00606 516 KLRKLDQEMEQLNHHTTTRTQME-----MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS-KEINQT 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 259 KDKDAKkhnlginnnnilqpVDSKIQEIEYMENHINS--KRLNNDLVGSTENLLKEDSCTASSKNYKNASGVVNSSPRSH 336
Cdd:TIGR00606 590 RDRLAK--------------LNKELASLEQNKNHINNelESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR 655
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 337 SATNGS-------IPSSSSKNEKKQKCTSKSPSTHKDLME--NCIPNNQLSKPDALVRLEQDIKKL---------KADLQ 398
Cdd:TIGR00606 656 AMLAGAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEfiSDLQSKLRLAPDKLKSTESELKKKekrrdemlgLAPGR 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 399 AS--RQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQN---KLHNA------------VQMKQKD-KQNISQLEKKL 460
Cdd:TIGR00606 736 QSiiDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTimpEEESAkvcltdvtimerFQMELKDvERKIAQQAAKL 815
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 461 KAEQEARSFVE-KQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIRELEAEGKKLTMDMKVK---EDQIRELEL 536
Cdd:TIGR00606 816 QGSDLDRTVQQvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRqqfEEQLVELST 895
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 537 KVQEL-RKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKD--LKQK 613
Cdd:TIGR00606 896 EVQSLiREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDdyLKQK 975
|
490
....*....|.
gi 31542661 614 IAEVMAVMPSI 624
Cdd:TIGR00606 976 ETELNTVNAQL 986
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
386-578 |
2.02e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 386 LEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQE 465
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 466 ARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGEcTETLRNRIRE---LEAEGKKLTMDMKVKE----DQIRELELKV 538
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEAT-LRTARERVEEaeaLLEAGKCPECGQPVEGsphvETIEEDRERV 477
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 31542661 539 QELrkykenEKDTEVLMSALSAMQDKTQHLENSLSAETRI 578
Cdd:PRK02224 478 EEL------EAELEDLEEEVEEVEERLERAEDLVEAEDRI 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
383-617 |
2.64e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 383 LVRLEQDIKKLKADLQASRQVEQ-ELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLK 461
Cdd:TIGR02169 267 LEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 462 AEQEARSfvekQLMEEkkrkkleeataaravafaAASRGECTETLRNRIRELEAEGKKL---TMDMKVK-EDQIREL-EL 536
Cdd:TIGR02169 347 EERKRRD----KLTEE------------------YAELKEELEDLRAELEEVDKEFAETrdeLKDYREKlEKLKREInEL 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 537 KVQELRKYKENEKdtevLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:TIGR02169 405 KRELDRLQEELQR----LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
.
gi 31542661 617 V 617
Cdd:TIGR02169 481 V 481
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
506-575 |
2.88e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 2.88e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542661 506 LRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELRK--YKENEKDTEVlmsalSAMQDKTQHLENSLSAE 575
Cdd:COG2433 418 LEEQVERLEAEVEELEAELEEKDERIERLERELSEARSeeRREIRKDREI-----SRLDREIERLERELEEE 484
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
390-664 |
3.18e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 390 IKKLKADLQASRQVEQELRSQI-----SSLSSTERgiRSEMGQLRQENELLQNKLHNAVQMKQKDKQ--------NISQL 456
Cdd:COG5022 774 IQVIQHGFRLRRLVDYELKWRLfiklqPLLSLLGS--RKEYRSYLACIIKLQKTIKREKKLRETEEVefslkaevLIQKF 851
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 457 EKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASrgecTETLRNRIRELEAEGKKLTMDmkVKEDQIRELEL 536
Cdd:COG5022 852 GRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKS----ISSLKLVNLELESEIIELKKS--LSSDLIENLEF 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 537 KVQELRKYKENeKDTEVLMSALSAMQDKTQHLENSLSAETRIKlDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAE 616
Cdd:COG5022 926 KTELIARLKKL-LNNIDLEEGPSIEYVKLPELNKLHEVESKLK-ETSEEYEDLLKKSTILVREGNKANSELKNFKKELAE 1003
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 31542661 617 VMAVMPSITYSAATSPLSPVSP---HYSSKFVETSPSGLdpnaSVYQPLKK 664
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVaelQSASKIISSESTEL----SILKPLQK 1050
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
386-459 |
4.46e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 39.71 E-value: 4.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31542661 386 LEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKK 459
Cdd:COG4026 133 LREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
403-617 |
4.66e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 403 VEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKL------HNAVQMKQKDK---QNISQLEKKLKAEQEARSFVEKQ 473
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALeefrqkNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 474 LmeekkrkkleeataaravafaaasrgectETLRNRIRELEAEGKKLTMDMKVKE--DQIRELELKVQELR-KYKENEkd 550
Cdd:COG3206 242 L-----------------------------AALRAQLGSGPDALPELLQSPVIQQlrAQLAELEAELAELSaRYTPNH-- 290
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542661 551 tevlmSALSAMQDKTQHLENSLSAETRikldlfSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEV 617
Cdd:COG3206 291 -----PDVIALRAQIAALRAQLQQEAQ------RILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
378-557 |
5.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 378 SKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTER--GIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQ 455
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEERLEELRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 456 LEkKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAfaaasrgectETLRNRIRELEAEGKKLTMDMKVKEDQIRELE 535
Cdd:COG4717 165 LE-ELEAELAELQEELEELLEQLSLATEEELQDLAEEL----------EELQQRLAELEEELEEAQEELEELEEELEQLE 233
|
170 180
....*....|....*....|..
gi 31542661 536 LKVQELRKYKENEKDTEVLMSA 557
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIA 255
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
375-616 |
6.41e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.50 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 375 NQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLsstergiRSEMGQLRQENELLQNKLHNAVQMKQKDKQNIS 454
Cdd:COG4372 11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQL-------REELEQAREELEQLEEELEQARSELEQLEEELE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 455 QLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAaasrgectETLRNRIRELEAEGKKLTMDMKVKEDQIREL 534
Cdd:COG4372 84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKER--------QDLEQQRKQLEAQIAELQSEIAEREEELKEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 535 ELKVQELRKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKI 614
Cdd:COG4372 156 EEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLAL 235
|
..
gi 31542661 615 AE 616
Cdd:COG4372 236 SA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-620 |
7.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 504 ETLRNRIRELEAEGKKLT---MDMKVKEDQIRELELKVQELRKYKENEKDTEVLMSALSAMQDKTQHLENSLS----AET 576
Cdd:COG4913 613 AALEAELAELEEELAEAEerlEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDdlaaLEE 692
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 31542661 577 RIKlDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAV 620
Cdd:COG4913 693 QLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
345-625 |
9.03e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 345 SSSSKNEKKQKCTSKspsthKDLMENCIPNNQlSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSE 424
Cdd:TIGR04523 354 SESENSEKQRELEEK-----QNEIEKLKKENQ-SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 425 MGQLRQENELLQNKLHNAvqmkqkdKQNISQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGEcTE 504
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDL-------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE-LK 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542661 505 TLRNRIRELEAEGKKLTmdmkvkeDQIRELELKVQELRKYKeNEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFS 584
Cdd:TIGR04523 500 KLNEEKKELEEKVKDLT-------KKISSLKEKIEKLESEK-KEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE 571
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 31542661 585 ALGDAKRQLEIAQGQ----ILQKDQEIKDLKQKIAEVMAVMPSIT 625
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEkqelIDQKEKEKKDLIKEIEEKEKKISSLE 616
|
|
| |
