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Conserved domains on  [gi|124248489|ref|NP_062254|]
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bax inhibitor 1 [Rattus norvegicus]

Protein Classification

BI-1 domain-containing protein( domain architecture ID 10179631)

BI-1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BI-1 cd10430
BAX inhibitor (BI)-1; Mammalian members of the BAX inhibitor (BI)-1 like family of small ...
 16-228 2.47e-97

BAX inhibitor (BI)-1; Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance.


:

Pssm-ID: 198412  Cd Length: 213  Bit Score: 282.96  E-value: 2.47e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  16 FSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFiqAGLLSALGALALMICLMATPHSHETEQKRLGLLAGFAFLT 95
Cdd:cd10430    1 FNQISPSVQQHLKKVYLTLAVALLAAAVGAYVHMVINI--GGLLTGLLSLGLSLWLAFTPSTGKNEPKRLGLLLGFAFLT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  96 GVGLGPALELCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLY 175
Cdd:cd10430   79 GASLGPLLDLVIAINPSIIVTAFLGTAVIFACFSLAALLAKRREYLYLGGLLSSALSILLLVSLANIFGGSKFLFQAELY 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 124248489 176 MGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLILAFN 228
Cdd:cd10430  159 LGLLVFCGFVLFDTQMIIEKAENGDRDYIWHALDLFVDFVALFRRLLIILAKK 211
 
Name Accession Description Interval E-value
BI-1 cd10430
BAX inhibitor (BI)-1; Mammalian members of the BAX inhibitor (BI)-1 like family of small ...
 16-228 2.47e-97

BAX inhibitor (BI)-1; Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance.


Pssm-ID: 198412  Cd Length: 213  Bit Score: 282.96  E-value: 2.47e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  16 FSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFiqAGLLSALGALALMICLMATPHSHETEQKRLGLLAGFAFLT 95
Cdd:cd10430    1 FNQISPSVQQHLKKVYLTLAVALLAAAVGAYVHMVINI--GGLLTGLLSLGLSLWLAFTPSTGKNEPKRLGLLLGFAFLT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  96 GVGLGPALELCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLY 175
Cdd:cd10430   79 GASLGPLLDLVIAINPSIIVTAFLGTAVIFACFSLAALLAKRREYLYLGGLLSSALSILLLVSLANIFGGSKFLFQAELY 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 124248489 176 MGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLILAFN 228
Cdd:cd10430  159 LGLLVFCGFVLFDTQMIIEKAENGDRDYIWHALDLFVDFVALFRRLLIILAKK 211
Bax1-I pfam01027
Inhibitor of apoptosis-promoting Bax1; Programmed cell-death involves a set of Bcl-2 family ...
 24-225 4.92e-32

Inhibitor of apoptosis-promoting Bax1; Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localized to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localize predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. The budding yeast member of this family has been found unexpectedly to encode a BH3 domain-containing protein (Ybh3p) that regulates the mitochondrial pathway of apoptosis in a phylogenetically conserved manner. Examination of the crystal structure of a bacterial member of this family shows that these proteins mediate a calcium leak across the membrane that is pH-dependent. Calcium homoeostasis balances passive calcium leak with active calcium uptake. The structure exists in a pore-closed and pore-open conformation, at pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline transition; together these findings suggest that pH controls the conformational transition.


Pssm-ID: 460029  Cd Length: 207  Bit Score: 116.12  E-value: 4.92e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489   24 QQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMI--------CLMATPHSHETEQKRLGLLAGFAFLT 95
Cdd:pfam01027   1 RQFLRKVYGLLALGLLLTAAVAYLVLSSPALLFPSLHPPLFWVLIIaplgllfgALLLARKRKYSSNVALLLLLAFTLLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489   96 GVGLGPaleLCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYlFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLY 175
Cdd:pfam01027  81 GLTLGP---LLLVYTGAIIATAFLGTAAIFGGLSLYALTTKRDLS-FLGGFLFAGLIGLIVASLVNIFLPSSALSLAISY 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124248489  176 MGLLVMCGFVLFDTQLIIEKAEH-GDKDYIWHCIDLFLDFVTLFRKLMLIL 225
Cdd:pfam01027 157 LGVLLFSGFILYDTQRIIKRYGEyGDYDAILAALSLYLDFINLFLSLLRIL 207
YbhL COG0670
Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family ...
 1-226 2.92e-18

Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family [Inorganic ion transport and metabolism];


Pssm-ID: 440434  Cd Length: 231  Bit Score: 80.22  E-value: 2.92e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489   1 MNIFDRKINFDAllkfSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMI-----CLMATP 75
Cdd:COG0670    1 MNNFDRNAGAAA----AASDAGLRKVLRNTYGLLALGLLLTALVAYLGMALPGLAALLFGSPGLFWVLLiaplgLVFLLS 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  76 HSHETEQKRLG--LLAGFAFLTGVGLGPALELCIAIN-PSILPTAFMGTAMIFTCFSLSAlYARRRSYLFLGGILMSAMS 152
Cdd:COG0670   77 KLANRANSAAAlaLLFAYTALMGLTLSPILLVYTGLSgPASIAQAFGGTAATFGGLSLYG-YTTKRDLSFLGSFLFMGLI 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124248489 153 LMFVSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAEHgDKDYIWHCIDLFLDFVTLFRKLMLILA 226
Cdd:COG0670  156 GLIIASLVNIFLQSPALSLAISVAGVLLFSGLTLYDTQRIKHGYET-NKQYIMAALSLYLDFINLFLSLLRLLG 228
PRK10447 PRK10447
FtsH protease modulator YccA;
77-227 6.73e-07

FtsH protease modulator YccA;


Pssm-ID: 182469  Cd Length: 219  Bit Score: 48.68  E-value: 6.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  77 SHETEQKRLGLLAGFAF--LTGVGLGPALELCIAINP-SILPTAFMGTAMIFTCFSLSALyARRRSYLFLGGILMSAMSL 153
Cdd:PRK10447  66 TYKTANKPTGILSAFAFtgFLGYILGPILNTYLSAGMgDVIALALGGTALVFFCCSAYVL-TTRKDMSFLGGMLMAGIVV 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124248489 154 MFVSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKaehGDKDYIWHCIDLFLDFVTLFRKLMLILAF 227
Cdd:PRK10447 145 VLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHG---GETNYIRATVSLYVSLYNIFVSLLSILGF 215
 
Name Accession Description Interval E-value
BI-1 cd10430
BAX inhibitor (BI)-1; Mammalian members of the BAX inhibitor (BI)-1 like family of small ...
 16-228 2.47e-97

BAX inhibitor (BI)-1; Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance.


Pssm-ID: 198412  Cd Length: 213  Bit Score: 282.96  E-value: 2.47e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  16 FSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFiqAGLLSALGALALMICLMATPHSHETEQKRLGLLAGFAFLT 95
Cdd:cd10430    1 FNQISPSVQQHLKKVYLTLAVALLAAAVGAYVHMVINI--GGLLTGLLSLGLSLWLAFTPSTGKNEPKRLGLLLGFAFLT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  96 GVGLGPALELCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLY 175
Cdd:cd10430   79 GASLGPLLDLVIAINPSIIVTAFLGTAVIFACFSLAALLAKRREYLYLGGLLSSALSILLLVSLANIFGGSKFLFQAELY 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 124248489 176 MGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLILAFN 228
Cdd:cd10430  159 LGLLVFCGFVLFDTQMIIEKAENGDRDYIWHALDLFVDFVALFRRLLIILAKK 211
BI-1-like cd06181
BAX inhibitor (BI)-1/YccA-like protein family; Mammalian members of the BAX inhibitor (BI)-1 ...
 22-226 7.68e-57

BAX inhibitor (BI)-1/YccA-like protein family; Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. This superfamily also contains the lifeguard(LFG)-like proteins and other subfamilies which appear to be related by common descent and also function as inhibitors of apoptosis. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.


Pssm-ID: 198409  Cd Length: 202  Bit Score: 179.53  E-value: 7.68e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  22 STQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMICLMATPHSHETEQK-RLGLLAGFAFLTGVGLG 100
Cdd:cd06181    1 STKDFLRKVYMILALQLLLTAATATAFTVCDPGWYWSPALMGLLTSMLALMATAAMIRAKMPvNLILLFGFTGLMGYVVG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489 101 PALELCiaiNPSILPTAFMGTAMIFTCFSLSALYARRrSYLFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLYMGLLV 180
Cdd:cd06181   81 PLLFFY---GPTILLRALGGTALVFFGLTVYALQARK-DFLFLGGPLMAGLGFLLLSFLLNTFFYSPWLHLVAAAVGLVL 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 124248489 181 MCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLILA 226
Cdd:cd06181  157 FCGFLLYDTQLIIHKAEVGPEDYINACISLYLDIINIFIRLLTILA 202
Bax1-I pfam01027
Inhibitor of apoptosis-promoting Bax1; Programmed cell-death involves a set of Bcl-2 family ...
 24-225 4.92e-32

Inhibitor of apoptosis-promoting Bax1; Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localized to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localize predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. The budding yeast member of this family has been found unexpectedly to encode a BH3 domain-containing protein (Ybh3p) that regulates the mitochondrial pathway of apoptosis in a phylogenetically conserved manner. Examination of the crystal structure of a bacterial member of this family shows that these proteins mediate a calcium leak across the membrane that is pH-dependent. Calcium homoeostasis balances passive calcium leak with active calcium uptake. The structure exists in a pore-closed and pore-open conformation, at pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline transition; together these findings suggest that pH controls the conformational transition.


Pssm-ID: 460029  Cd Length: 207  Bit Score: 116.12  E-value: 4.92e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489   24 QQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMI--------CLMATPHSHETEQKRLGLLAGFAFLT 95
Cdd:pfam01027   1 RQFLRKVYGLLALGLLLTAAVAYLVLSSPALLFPSLHPPLFWVLIIaplgllfgALLLARKRKYSSNVALLLLLAFTLLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489   96 GVGLGPaleLCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYlFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLY 175
Cdd:pfam01027  81 GLTLGP---LLLVYTGAIIATAFLGTAAIFGGLSLYALTTKRDLS-FLGGFLFAGLIGLIVASLVNIFLPSSALSLAISY 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124248489  176 MGLLVMCGFVLFDTQLIIEKAEH-GDKDYIWHCIDLFLDFVTLFRKLMLIL 225
Cdd:pfam01027 157 LGVLLFSGFILYDTQRIIKRYGEyGDYDAILAALSLYLDFINLFLSLLRIL 207
YbhL COG0670
Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family ...
 1-226 2.92e-18

Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family [Inorganic ion transport and metabolism];


Pssm-ID: 440434  Cd Length: 231  Bit Score: 80.22  E-value: 2.92e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489   1 MNIFDRKINFDAllkfSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMI-----CLMATP 75
Cdd:COG0670    1 MNNFDRNAGAAA----AASDAGLRKVLRNTYGLLALGLLLTALVAYLGMALPGLAALLFGSPGLFWVLLiaplgLVFLLS 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  76 HSHETEQKRLG--LLAGFAFLTGVGLGPALELCIAIN-PSILPTAFMGTAMIFTCFSLSAlYARRRSYLFLGGILMSAMS 152
Cdd:COG0670   77 KLANRANSAAAlaLLFAYTALMGLTLSPILLVYTGLSgPASIAQAFGGTAATFGGLSLYG-YTTKRDLSFLGSFLFMGLI 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124248489 153 LMFVSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAEHgDKDYIWHCIDLFLDFVTLFRKLMLILA 226
Cdd:COG0670  156 GLIIASLVNIFLQSPALSLAISVAGVLLFSGLTLYDTQRIKHGYET-NKQYIMAALSLYLDFINLFLSLLRLLG 228
BI-1-like_bacterial cd10432
Bacterial BAX inhibitor (BI)-1/YccA-like proteins; This family is comprised of bacterial ...
 22-226 2.07e-15

Bacterial BAX inhibitor (BI)-1/YccA-like proteins; This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.


Pssm-ID: 198414  Cd Length: 211  Bit Score: 72.21  E-value: 2.07e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  22 STQQHLKKVYASFALCMFVAAAGAYV---HVVTRFIQAGLLSALGALALMICLMATPH--SHETEQKRLGLLAGFAFLTG 96
Cdd:cd10432    1 GLRSFMKKVYGLMAAGLLLTAVGAYVgasTPALLLIAGSPLMWVLLIAELALVFGLSFriNKMSVATALPLFFAFAALTG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  97 VGLGPALELCIAInpsILPTAFMGTAMIFTCFSLSAlYARRRSYLFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLYM 176
Cdd:cd10432   81 LTLSPILLVYTGA---SIAQAFFTTAATFGGLSLYG-YTTKKDLSFLGSFLFMGLIGLIIASLVNIFLQSSALQFAISAI 156

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 124248489 177 GLLVMCGFVLFDTQLIIEKAEHGD-----KDYIWHCIDLFLDFVTLFRKLMLILA 226
Cdd:cd10432  157 GVLIFSGLIAYDTQRIKRMYEAGGgesgyKDAIMGALSLYLDFINLFLFLLRLFG 211
GHITM cd10431
Growth-hormone inducible transmembrane protein; GHITM appears to be ubiquitiously expressed in ...
 68-226 7.75e-13

Growth-hormone inducible transmembrane protein; GHITM appears to be ubiquitiously expressed in mammalian cells and expression has also been observed in various cancer cell lines. A cytoprotective function has been suggested. It is closely related to the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect.


Pssm-ID: 198413  Cd Length: 264  Bit Score: 65.86  E-value: 7.75e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  68 MICLMATPHSHETEQKRLgLLAGFAFLTGVGLGPaleLCIaINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGIL 147
Cdd:cd10431   94 GMLVRSYTYPENPGAKHL-AWLGHSGVQGAVLAP---LCF-LGGPLLIRAALYTAGIVGGLSTVAACAPSEKFLYMGGPL 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489 148 MSAMSLMFVSSLGNLFF-----GSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAE----HGDKDY--IWHCIDLFLDFVT 216
Cdd:cd10431  169 AIGLGVVFASSLGSMFLppttaLGAGLYSVSLYGGLVLFGGFLLYDTQKIIKRAEthplYGVRKYdpINASMSIYMDTIN 248

                        170
                 ....*....|
gi 124248489 217 LFRKLMLILA 226
Cdd:cd10431  249 IFIRLVTILA 258
YccA_like cd10433
YccA-like proteins; A prokaryotic member of the BAX inhibitor (BI)-1 like family of small ...
 22-227 1.51e-12

YccA-like proteins; A prokaryotic member of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.


Pssm-ID: 198415  Cd Length: 205  Bit Score: 64.14  E-value: 1.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  22 STQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMICLMatphsHETEQKRLGLLAGFAF--LTGVGL 99
Cdd:cd10433    2 STNKVLRNTYMLLSMTLAFSALGAGVSMAGGSPIMGLLLTLVGAYGLLFLI-----EKTRNSAWGIVLVFAFtgFMGYTL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489 100 GPALELCIAIN--PSILPTAFMGTAMIFTCFSLSALyARRRSYLFLGGILMSAMSLMFVSSLGNLFFGSIWLFQANLYMG 177
Cdd:cd10433   77 GPILNMYLALPngGQIIMTALGGTAAIFFGLSAYAL-TTKKDFSFLGGFLFVGAIVLLLAAVANIFLQIPALSLAISAAF 155

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 124248489 178 LLVMCGFVLFDTQLIIEKaehGDKDYIWHCIDLFLDFVTLFRKLMLILAF 227
Cdd:cd10433  156 VLFSSGFILYDTSRIIHG---GETNYIMATVSLYVSIYNLFVSLLNLLGA 202
GAAP_like cd10429
Golgi antiapoptotic protein; GAAP (or transmembrane BAX inhibitor motif containing 4) is a ...
 68-226 9.79e-10

Golgi antiapoptotic protein; GAAP (or transmembrane BAX inhibitor motif containing 4) is a regulator of apoptosis that is related to the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Human GAAP has been linked to the modulation of intracellular fluxes of Ca(2+), by suppressing influx from the extracellular medium and reducing release from intracellular stores. A viral homolog (vaccinia virus vGAAP) acts similar to its human counterpart in inhibiting apoptosis.


Pssm-ID: 198411  Cd Length: 233  Bit Score: 56.84  E-value: 9.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  68 MICLMATPHSHETeqkRLGLLAGFAFLTGVGLGPAlelCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGIL 147
Cdd:cd10429   80 LIALYWKRHSHPV---NLILLSLFTLCEAYTVGLV---VSFYDGKIVLQALILTLGVFVGLTAYTFQTKRDFSSFGALLF 153

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124248489 148 MSAMSLMFVSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKaeHGDKDYIWHCIDLFLDFVTLFRKLMLILA 226
Cdd:cd10429  154 ILLWALILLALIFQFFPYSPTFELVYAGLGALLFSGYIVYDTQLIMKR--LSPDEYILAAISLYLDIINLFLSILRILA 230
PRK10447 PRK10447
FtsH protease modulator YccA;
77-227 6.73e-07

FtsH protease modulator YccA;


Pssm-ID: 182469  Cd Length: 219  Bit Score: 48.68  E-value: 6.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489  77 SHETEQKRLGLLAGFAF--LTGVGLGPALELCIAINP-SILPTAFMGTAMIFTCFSLSALyARRRSYLFLGGILMSAMSL 153
Cdd:PRK10447  66 TYKTANKPTGILSAFAFtgFLGYILGPILNTYLSAGMgDVIALALGGTALVFFCCSAYVL-TTRKDMSFLGGMLMAGIVV 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124248489 154 MFVSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKaehGDKDYIWHCIDLFLDFVTLFRKLMLILAF 227
Cdd:PRK10447 145 VLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHG---GETNYIRATVSLYVSLYNIFVSLLSILGF 215
LFG_like cd10428
Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis; ...
 117-226 4.23e-03

Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis; Lifeguard (LFG) inhibits Fas-mediated apoptosis and interacts with the death receptor FasR/CD95/Apo1. LFG has been shown to interact with Bax and is supposed to be integral to cellular membranes such as the ER. A close homolog, PP1201 or RECS1, appears located in the Golgi compartment and also interacts with the Fas receptor CD95/Apo1. PP1201 is expressed in response to shear stress.


Pssm-ID: 198410  Cd Length: 217  Bit Score: 37.14  E-value: 4.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124248489 117 AFMGTAMIftCFSLSaLYARRRSYLF--LGGILMSAMSLMFVSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFDTQLII- 193
Cdd:cd10428  107 AVGITAVV--CLGLT-LFAFQTKYDFtsCGGVLFVLSIVLLIFGIVAIFFYVKWLHIVYASLGALLFSLYLAVDTQLLMg 183

                         90       100       110
                 ....*....|....*....|....*....|....
gi 124248489 194 -EKAEHGDKDYIWHCIDLFLDFVTLFRKLMLILA 226
Cdd:cd10428  184 gRKYELSPEEYIFAALNIYVDIVNIFLYILQLIG 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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