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Conserved domains on  [gi|9845295|ref|NP_063918|]
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large ribosomal subunit protein eL42 [Mus musculus]

Protein Classification

eL42 family ribosomal protein( domain architecture ID 10015240)

eL42 family ribosomal protein is a component of the large ribosomal subunit.

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00157 PTZ00157
60S ribosomal protein L36a; Provisional
1-86 3.16e-36

60S ribosomal protein L36a; Provisional


:

Pssm-ID: 240296  Cd Length: 84  Bit Score: 117.99  E-value: 3.16e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845295     1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVepNCRSK 80
Cdd:PTZ00157   1 MVNVPKNRKTYCKKCGKHTSHKVSQYKKGKESLFAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLKLECT--KCKSK 78

                 ....*.
gi 9845295    81 RMLAIK 86
Cdd:PTZ00157  79 RQKVLK 84
 
Name Accession Description Interval E-value
PTZ00157 PTZ00157
60S ribosomal protein L36a; Provisional
1-86 3.16e-36

60S ribosomal protein L36a; Provisional


Pssm-ID: 240296  Cd Length: 84  Bit Score: 117.99  E-value: 3.16e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845295     1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVepNCRSK 80
Cdd:PTZ00157   1 MVNVPKNRKTYCKKCGKHTSHKVSQYKKGKESLFAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLKLECT--KCKSK 78

                 ....*.
gi 9845295    81 RMLAIK 86
Cdd:PTZ00157  79 RQKVLK 84
Ribosomal_L44 pfam00935
Ribosomal protein L44;
17-94 4.52e-32

Ribosomal protein L44;


Pssm-ID: 460004  Cd Length: 76  Bit Score: 107.25  E-value: 4.52e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 9845295     17 KHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEpnCRSKRMLAIKRCKHFELG 94
Cdd:pfam00935   1 KHTEHKVSQYKKGKASLLAQGQRRYDRKQKGYGGQTKPVPRRKAKTTKKIVLRLECTE--CGKAHMRPGKRAKKFELV 76
 
Name Accession Description Interval E-value
PTZ00157 PTZ00157
60S ribosomal protein L36a; Provisional
1-86 3.16e-36

60S ribosomal protein L36a; Provisional


Pssm-ID: 240296  Cd Length: 84  Bit Score: 117.99  E-value: 3.16e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845295     1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVepNCRSK 80
Cdd:PTZ00157   1 MVNVPKNRKTYCKKCGKHTSHKVSQYKKGKESLFAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLKLECT--KCKSK 78

                 ....*.
gi 9845295    81 RMLAIK 86
Cdd:PTZ00157  79 RQKVLK 84
Ribosomal_L44 pfam00935
Ribosomal protein L44;
17-94 4.52e-32

Ribosomal protein L44;


Pssm-ID: 460004  Cd Length: 76  Bit Score: 107.25  E-value: 4.52e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 9845295     17 KHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEpnCRSKRMLAIKRCKHFELG 94
Cdd:pfam00935   1 KHTEHKVSQYKKGKASLLAQGQRRYDRKQKGYGGQTKPVPRRKAKTTKKIVLRLECTE--CGKAHMRPGKRAKKFELV 76
rpl44e PRK05767
50S ribosomal protein L44e; Validated
3-93 6.26e-16

50S ribosomal protein L44e; Validated


Pssm-ID: 180247  Cd Length: 92  Bit Score: 66.86  E-value: 6.26e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845295     3 NVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFrKKAKTTKKIVLRLECVEpnCRSKRM 82
Cdd:PRK05767   2 KMPKKIRTYCPYCKTHTEHEVEKVKKGKRSELKWGQRQYRRKTIGYGGKFSPVP-GGAKPTKKVDLRYRCTE--CGKAHT 78
                         90
                 ....*....|.
gi 9845295    83 LAIKRCKHFEL 93
Cdd:PRK05767  79 REGFRAKKFEL 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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