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Conserved domains on  [gi|10140990|ref|NP_065567|]
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ORF67A [Alcelaphine gammaherpesvirus 1]

Protein Classification

Herpes_UL33 domain-containing protein( domain architecture ID 10507960)

Herpes_UL33 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Herpes_UL33 pfam03581
Herpesvirus UL33-like protein; This is a family of Herpesvirus proteins including UL33,UL51. ...
 7-78 6.59e-32

Herpesvirus UL33-like protein; This is a family of Herpesvirus proteins including UL33,UL51. The proteins in this family are involved in packaging viral DNA.


:

Pssm-ID: 427377  Cd Length: 72  Bit Score: 105.86  E-value: 6.59e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 10140990    7 LDFPSILPEDIQVIAPTSYAKLSLLSHCQHLKLFIGQQGSKGVCAHSRVLEEKLEAVKEVISKIIETDKILE 78
Cdd:pfam03581  1 VWFEPMLPREIELILPTTDARLNYLSHCQRLASFLRYVGGDGACVHGEVLERKRERFAQVISKILDLDQILE 72
 
Name Accession Description Interval E-value
Herpes_UL33 pfam03581
Herpesvirus UL33-like protein; This is a family of Herpesvirus proteins including UL33,UL51. ...
 7-78 6.59e-32

Herpesvirus UL33-like protein; This is a family of Herpesvirus proteins including UL33,UL51. The proteins in this family are involved in packaging viral DNA.


Pssm-ID: 427377  Cd Length: 72  Bit Score: 105.86  E-value: 6.59e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 10140990    7 LDFPSILPEDIQVIAPTSYAKLSLLSHCQHLKLFIGQQGSKGVCAHSRVLEEKLEAVKEVISKIIETDKILE 78
Cdd:pfam03581  1 VWFEPMLPREIELILPTTDARLNYLSHCQRLASFLRYVGGDGACVHGEVLERKRERFAQVISKILDLDQILE 72
PHA03225 PHA03225
DNA packaging protein UL33; Provisional
 9-77 5.88e-07

DNA packaging protein UL33; Provisional


Pssm-ID: 165486  Cd Length: 125  Bit Score: 43.90  E-value: 5.88e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 10140990    9 FPSILPEDIQVIAPTSYAKLSLLSHCQHLKLFI-----GQQGSKGVCAHSRVLEEKLEAVKEVISKIIETDKIL 77
Cdd:PHA03225  47 FFDLSPPEIELALPTTDAKLNYLAHTANLAAALrydcaGDLDGGRMCAHAELIARRRERFAKILNKFLDLHQIL 120
 
Name Accession Description Interval E-value
Herpes_UL33 pfam03581
Herpesvirus UL33-like protein; This is a family of Herpesvirus proteins including UL33,UL51. ...
 7-78 6.59e-32

Herpesvirus UL33-like protein; This is a family of Herpesvirus proteins including UL33,UL51. The proteins in this family are involved in packaging viral DNA.


Pssm-ID: 427377  Cd Length: 72  Bit Score: 105.86  E-value: 6.59e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 10140990    7 LDFPSILPEDIQVIAPTSYAKLSLLSHCQHLKLFIGQQGSKGVCAHSRVLEEKLEAVKEVISKIIETDKILE 78
Cdd:pfam03581  1 VWFEPMLPREIELILPTTDARLNYLSHCQRLASFLRYVGGDGACVHGEVLERKRERFAQVISKILDLDQILE 72
PHA03225 PHA03225
DNA packaging protein UL33; Provisional
 9-77 5.88e-07

DNA packaging protein UL33; Provisional


Pssm-ID: 165486  Cd Length: 125  Bit Score: 43.90  E-value: 5.88e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 10140990    9 FPSILPEDIQVIAPTSYAKLSLLSHCQHLKLFI-----GQQGSKGVCAHSRVLEEKLEAVKEVISKIIETDKIL 77
Cdd:PHA03225  47 FFDLSPPEIELALPTTDAKLNYLAHTANLAAALrydcaGDLDGGRMCAHAELIARRRERFAKILNKFLDLHQIL 120
PHA03229 PHA03229
DNA packaging protein UL33; Provisional
 9-77 2.78e-05

DNA packaging protein UL33; Provisional


Pssm-ID: 223012  Cd Length: 132  Bit Score: 39.61  E-value: 2.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10140990    9 FPSILPEDIQVIAPTSYAKLSLLSHCQHLKLFI-------------GQQGSKGVCAHSRVLEEKLEAVKEVISKIIETDK 75
Cdd:PHA03229  49 FEDLTPVELEVVFPTTDAKLNYLSRTQRLASLLayagdikapdaadAGQTRDPACAHAELLAQKRGRFAAVINRFLDLHQ 128


                 ..
gi 10140990   76 IL 77
Cdd:PHA03229 129 IL 130
PHA03236 PHA03236
DNA packaging protein UL33; Provisional
 9-80 2.57e-03

DNA packaging protein UL33; Provisional


Pssm-ID: 223018  Cd Length: 127  Bit Score: 33.98  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 10140990    9 FPSILPEDIQVIAPTSYAKLSLLSHCQ---------HLKLFIGQQGSKG----VCAHSRVLEEKLEAVKEVISKIIETDK 75
Cdd:PHA03236  43 FEYLIPDEIEAIFPTTDSKLNYLSFTRrlasvlrhgRIRVDGGNVNSFGatavVCEHGASLTGRRERFASVINRFLDLHQ 122


                 ....*
gi 10140990   76 ILEKS 80
Cdd:PHA03236 123 ILKDC 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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