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BCL-6 corepressor-like protein 1 isoform 1 [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||||||
PUFD_like_1 | cd14260 | PCGF Ub-like fold discriminator of BCOR-like 1; The PUFD domain binds the RAWUL (RING finger ... |
1592-1705 | 9.31e-68 | |||||||
PCGF Ub-like fold discriminator of BCOR-like 1; The PUFD domain binds the RAWUL (RING finger and WD40-associated ubiquitin-like) domain of the polycomb-group RING finger homologs PCGF1 and PCGF3. PUFD was characterized as a domain of the BCL6 corepressor BCOR. It does not appear to bind to PCGF2 and PCGF4. PCGF1 is a component of the Polycomb group (PcG) multi-protein BCOR complex, which is involved in repressing the transcription of BCL6 and CDKN1A. The BCL-6 corepressor-like protein 1 (BCoR-L1) is largely uncharacterized; it contains ankyrin repeats. : Pssm-ID: 271223 Cd Length: 115 Bit Score: 223.57 E-value: 9.31e-68
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1424-1529 | 1.55e-23 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; : Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 102.72 E-value: 1.55e-23
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PHA03247 super family | cl33720 | large tegument protein UL36; Provisional |
198-636 | 3.58e-16 | |||||||
large tegument protein UL36; Provisional The actual alignment was detected with superfamily member PHA03247: Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 85.38 E-value: 3.58e-16
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Name | Accession | Description | Interval | E-value | |||||||
PUFD_like_1 | cd14260 | PCGF Ub-like fold discriminator of BCOR-like 1; The PUFD domain binds the RAWUL (RING finger ... |
1592-1705 | 9.31e-68 | |||||||
PCGF Ub-like fold discriminator of BCOR-like 1; The PUFD domain binds the RAWUL (RING finger and WD40-associated ubiquitin-like) domain of the polycomb-group RING finger homologs PCGF1 and PCGF3. PUFD was characterized as a domain of the BCL6 corepressor BCOR. It does not appear to bind to PCGF2 and PCGF4. PCGF1 is a component of the Polycomb group (PcG) multi-protein BCOR complex, which is involved in repressing the transcription of BCL6 and CDKN1A. The BCL-6 corepressor-like protein 1 (BCoR-L1) is largely uncharacterized; it contains ankyrin repeats. Pssm-ID: 271223 Cd Length: 115 Bit Score: 223.57 E-value: 9.31e-68
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PUFD | pfam16553 | BCORL-PCGF1-binding domain; PUFD is the minimal domain at the C-terminus of BCORL (BCL6 ... |
1593-1707 | 4.29e-61 | |||||||
BCORL-PCGF1-binding domain; PUFD is the minimal domain at the C-terminus of BCORL (BCL6 corepressor) that is needed for binding and giving specificity to some of the PCGF proteins, polycomb-group RING finger homologs. PUFD binds to the RAWUL (RING finger- and WD40-associated ubiquitin-like) domain of the particular PCGF PCGF1, pfam16207. Polycomb group proteins form repressive complexes (PRC) that mediate epigenetic modifications of histones. In humans there are many different PCGF homologs whose functions all vary, but the direct binding partner of PCGF1 is BCOR. BCOR has emerged as an important player in development and health. Pssm-ID: 465171 Cd Length: 114 Bit Score: 204.54 E-value: 4.29e-61
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1424-1529 | 1.55e-23 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 102.72 E-value: 1.55e-23
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
198-636 | 3.58e-16 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 85.38 E-value: 3.58e-16
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
1426-1517 | 6.92e-14 | |||||||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 68.60 E-value: 6.92e-14
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PHA03100 | PHA03100 | ankyrin repeat protein; Provisional |
1434-1514 | 1.33e-09 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 62.38 E-value: 1.33e-09
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Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
218-664 | 1.46e-07 | |||||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 56.70 E-value: 1.46e-07
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ANK | smart00248 | ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ... |
1456-1484 | 6.87e-06 | |||||||
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Pssm-ID: 197603 [Multi-domain] Cd Length: 30 Bit Score: 44.12 E-value: 6.87e-06
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rad23 | TIGR00601 | UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
272-337 | 7.49e-03 | |||||||
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 7.49e-03
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Name | Accession | Description | Interval | E-value | |||||||
PUFD_like_1 | cd14260 | PCGF Ub-like fold discriminator of BCOR-like 1; The PUFD domain binds the RAWUL (RING finger ... |
1592-1705 | 9.31e-68 | |||||||
PCGF Ub-like fold discriminator of BCOR-like 1; The PUFD domain binds the RAWUL (RING finger and WD40-associated ubiquitin-like) domain of the polycomb-group RING finger homologs PCGF1 and PCGF3. PUFD was characterized as a domain of the BCL6 corepressor BCOR. It does not appear to bind to PCGF2 and PCGF4. PCGF1 is a component of the Polycomb group (PcG) multi-protein BCOR complex, which is involved in repressing the transcription of BCL6 and CDKN1A. The BCL-6 corepressor-like protein 1 (BCoR-L1) is largely uncharacterized; it contains ankyrin repeats. Pssm-ID: 271223 Cd Length: 115 Bit Score: 223.57 E-value: 9.31e-68
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PUFD | pfam16553 | BCORL-PCGF1-binding domain; PUFD is the minimal domain at the C-terminus of BCORL (BCL6 ... |
1593-1707 | 4.29e-61 | |||||||
BCORL-PCGF1-binding domain; PUFD is the minimal domain at the C-terminus of BCORL (BCL6 corepressor) that is needed for binding and giving specificity to some of the PCGF proteins, polycomb-group RING finger homologs. PUFD binds to the RAWUL (RING finger- and WD40-associated ubiquitin-like) domain of the particular PCGF PCGF1, pfam16207. Polycomb group proteins form repressive complexes (PRC) that mediate epigenetic modifications of histones. In humans there are many different PCGF homologs whose functions all vary, but the direct binding partner of PCGF1 is BCOR. BCOR has emerged as an important player in development and health. Pssm-ID: 465171 Cd Length: 114 Bit Score: 204.54 E-value: 4.29e-61
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PUFD_like | cd14259 | PCGF Ub-like fold discriminator and related domains; The PUFD domain binds the RAWUL (RING ... |
1594-1705 | 1.18e-42 | |||||||
PCGF Ub-like fold discriminator and related domains; The PUFD domain binds the RAWUL (RING finger and WD40-associated ubiquitin-like) domain of the polycomb-group RING finger homologs PCGF1 and PCGF3. PUFD was characterized as a domain of the BCL6 corepressor BCOR. It does not appear to bind to PCGF2 and PCGF4. PCGF1 is a component of the Polycomb group (PcG) multi-protein BCOR complex, which is involved in repressing the transcription of BCL6 and CDKN1A. The BCL-6 corepressor (BCOR) is a transcriptional repressor required for germinal center formation and is possibly involved in apoptosis. Pssm-ID: 271222 Cd Length: 106 Bit Score: 151.31 E-value: 1.18e-42
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PUFD | cd14261 | PCGF Ub-like fold discriminator of BCOR; The PUFD domain binds the RAWUL (RING finger and ... |
1594-1705 | 1.15e-36 | |||||||
PCGF Ub-like fold discriminator of BCOR; The PUFD domain binds the RAWUL (RING finger and WD40-associated ubiquitin-like) domain of the polycomb-group RING finger homologs PCGF1 and PCGF3. PUFD was characterized as a domain of the BCL6 corepressor BCOR. It does not appear to bind to PCGF2 and PCGF4. PCGF1 is a component of the Polycomb group (PcG) multi-protein BCOR complex, which is involved in repressing the transcription of BCL6 and CDKN1A. The BCL-6 corepressor (BCOR) is a transcriptional repressor required for germinal center formation and is possibly involved in apoptosis. Pssm-ID: 271224 Cd Length: 117 Bit Score: 134.59 E-value: 1.15e-36
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1424-1529 | 1.55e-23 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 102.72 E-value: 1.55e-23
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1424-1531 | 3.90e-21 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 95.79 E-value: 3.90e-21
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
198-636 | 3.58e-16 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 85.38 E-value: 3.58e-16
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1399-1529 | 2.71e-15 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 78.46 E-value: 2.71e-15
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1448-1529 | 1.77e-14 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 76.15 E-value: 1.77e-14
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
1426-1517 | 6.92e-14 | |||||||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 68.60 E-value: 6.92e-14
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PHA03100 | PHA03100 | ankyrin repeat protein; Provisional |
1434-1514 | 1.33e-09 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 62.38 E-value: 1.33e-09
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Ank_2 | pfam12796 | Ankyrin repeats (3 copies); |
1460-1531 | 5.22e-09 | |||||||
Ankyrin repeats (3 copies); Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 54.74 E-value: 5.22e-09
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1426-1526 | 8.77e-08 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 55.73 E-value: 8.77e-08
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
181-609 | 1.20e-07 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 1.20e-07
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Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
218-664 | 1.46e-07 | |||||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 56.70 E-value: 1.46e-07
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PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
205-419 | 1.74e-07 | |||||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.04 E-value: 1.74e-07
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PHA03100 | PHA03100 | ankyrin repeat protein; Provisional |
1448-1529 | 6.23e-07 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 53.90 E-value: 6.23e-07
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ANKYR | COG0666 | Ankyrin repeat [Signal transduction mechanisms]; |
1448-1539 | 7.67e-07 | |||||||
Ankyrin repeat [Signal transduction mechanisms]; Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 52.65 E-value: 7.67e-07
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Ank_4 | pfam13637 | Ankyrin repeats (many copies); |
1456-1508 | 1.05e-06 | |||||||
Ankyrin repeats (many copies); Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 47.27 E-value: 1.05e-06
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PHA03095 | PHA03095 | ankyrin-like protein; Provisional |
1448-1525 | 1.08e-06 | |||||||
ankyrin-like protein; Provisional Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 53.10 E-value: 1.08e-06
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PTZ00322 | PTZ00322 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
1474-1553 | 1.34e-06 | |||||||
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 53.36 E-value: 1.34e-06
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PHA03100 | PHA03100 | ankyrin repeat protein; Provisional |
1421-1545 | 1.41e-06 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 52.75 E-value: 1.41e-06
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PHA02874 | PHA02874 | ankyrin repeat protein; Provisional |
1448-1526 | 2.49e-06 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 51.89 E-value: 2.49e-06
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PHA02878 | PHA02878 | ankyrin repeat protein; Provisional |
1430-1529 | 3.42e-06 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 51.80 E-value: 3.42e-06
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Ank_5 | pfam13857 | Ankyrin repeats (many copies); |
1442-1494 | 5.65e-06 | |||||||
Ankyrin repeats (many copies); Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 45.03 E-value: 5.65e-06
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
287-649 | 5.96e-06 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.48 E-value: 5.96e-06
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PHA03095 | PHA03095 | ankyrin-like protein; Provisional |
1442-1514 | 6.42e-06 | |||||||
ankyrin-like protein; Provisional Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 50.79 E-value: 6.42e-06
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ANK | smart00248 | ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ... |
1456-1484 | 6.87e-06 | |||||||
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Pssm-ID: 197603 [Multi-domain] Cd Length: 30 Bit Score: 44.12 E-value: 6.87e-06
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Ank | pfam00023 | Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
1456-1484 | 4.40e-05 | |||||||
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Pssm-ID: 459634 [Multi-domain] Cd Length: 34 Bit Score: 41.89 E-value: 4.40e-05
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PTZ00322 | PTZ00322 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
1448-1511 | 4.71e-05 | |||||||
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 48.36 E-value: 4.71e-05
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PHA02876 | PHA02876 | ankyrin repeat protein; Provisional |
1448-1514 | 1.07e-04 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 46.98 E-value: 1.07e-04
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Ank_3 | pfam13606 | Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
1456-1484 | 1.07e-04 | |||||||
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Pssm-ID: 463933 [Multi-domain] Cd Length: 30 Bit Score: 40.70 E-value: 1.07e-04
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PHA02878 | PHA02878 | ankyrin repeat protein; Provisional |
1448-1531 | 1.41e-04 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 46.41 E-value: 1.41e-04
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PHA02876 | PHA02876 | ankyrin repeat protein; Provisional |
1442-1505 | 1.61e-04 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 46.60 E-value: 1.61e-04
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PHA03095 | PHA03095 | ankyrin-like protein; Provisional |
1448-1543 | 3.87e-04 | |||||||
ankyrin-like protein; Provisional Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 45.02 E-value: 3.87e-04
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PLN03192 | PLN03192 | Voltage-dependent potassium channel; Provisional |
1429-1538 | 4.31e-04 | |||||||
Voltage-dependent potassium channel; Provisional Pssm-ID: 215625 [Multi-domain] Cd Length: 823 Bit Score: 45.24 E-value: 4.31e-04
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PHA03095 | PHA03095 | ankyrin-like protein; Provisional |
1427-1516 | 6.99e-04 | |||||||
ankyrin-like protein; Provisional Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 44.25 E-value: 6.99e-04
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PHA02875 | PHA02875 | ankyrin repeat protein; Provisional |
1421-1519 | 7.37e-04 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 43.83 E-value: 7.37e-04
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PRK05641 | PRK05641 | putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated |
271-322 | 7.64e-04 | |||||||
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Pssm-ID: 235540 [Multi-domain] Cd Length: 153 Bit Score: 41.77 E-value: 7.64e-04
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
197-336 | 9.80e-04 | |||||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.93 E-value: 9.80e-04
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PHA02874 | PHA02874 | ankyrin repeat protein; Provisional |
1448-1529 | 1.44e-03 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 43.03 E-value: 1.44e-03
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PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
274-569 | 1.54e-03 | |||||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.33 E-value: 1.54e-03
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Ank_4 | pfam13637 | Ankyrin repeats (many copies); |
1426-1476 | 2.27e-03 | |||||||
Ankyrin repeats (many copies); Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 37.64 E-value: 2.27e-03
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
274-337 | 2.52e-03 | |||||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.39 E-value: 2.52e-03
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PHA03100 | PHA03100 | ankyrin repeat protein; Provisional |
1448-1514 | 2.59e-03 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 42.34 E-value: 2.59e-03
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
273-471 | 2.84e-03 | |||||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.39 E-value: 2.84e-03
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PHA02875 | PHA02875 | ankyrin repeat protein; Provisional |
1426-1531 | 2.92e-03 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 41.90 E-value: 2.92e-03
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Ank_5 | pfam13857 | Ankyrin repeats (many copies); |
1475-1529 | 2.97e-03 | |||||||
Ankyrin repeats (many copies); Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 37.33 E-value: 2.97e-03
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
206-335 | 3.04e-03 | |||||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.53 E-value: 3.04e-03
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PHA02795 | PHA02795 | ankyrin-like protein; Provisional |
1447-1489 | 3.17e-03 | |||||||
ankyrin-like protein; Provisional Pssm-ID: 165157 [Multi-domain] Cd Length: 437 Bit Score: 41.90 E-value: 3.17e-03
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
180-353 | 3.79e-03 | |||||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.14 E-value: 3.79e-03
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PHA03100 | PHA03100 | ankyrin repeat protein; Provisional |
1470-1531 | 3.98e-03 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 41.57 E-value: 3.98e-03
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PHA03095 | PHA03095 | ankyrin-like protein; Provisional |
1427-1501 | 4.09e-03 | |||||||
ankyrin-like protein; Provisional Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 41.55 E-value: 4.09e-03
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PRK12727 | PRK12727 | flagellar biosynthesis protein FlhF; |
197-338 | 5.30e-03 | |||||||
flagellar biosynthesis protein FlhF; Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 41.51 E-value: 5.30e-03
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
74-336 | 5.34e-03 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 5.34e-03
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FAP | pfam07174 | Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ... |
284-337 | 6.29e-03 | |||||||
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Pssm-ID: 429334 Cd Length: 301 Bit Score: 40.68 E-value: 6.29e-03
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rad23 | TIGR00601 | UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
272-337 | 7.49e-03 | |||||||
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 7.49e-03
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PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
197-329 | 7.67e-03 | |||||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 7.67e-03
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PHA02876 | PHA02876 | ankyrin repeat protein; Provisional |
1471-1540 | 7.96e-03 | |||||||
ankyrin repeat protein; Provisional Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 40.82 E-value: 7.96e-03
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
206-351 | 8.44e-03 | |||||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 40.85 E-value: 8.44e-03
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PHA02716 | PHA02716 | CPXV016; CPX019; EVM010; Provisional |
1438-1526 | 8.73e-03 | |||||||
CPXV016; CPX019; EVM010; Provisional Pssm-ID: 165089 [Multi-domain] Cd Length: 764 Bit Score: 41.05 E-value: 8.73e-03
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
278-406 | 9.59e-03 | |||||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 40.47 E-value: 9.59e-03
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Blast search parameters | ||||
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