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Conserved domains on  [gi|187281616|ref|NP_077718|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial isoform 1 [Homo sapiens]

Protein Classification

NADH-quinone oxidoreductase subunit B family protein( domain architecture ID 10012723)

NADH-quinone oxidoreductase subunit B (NuoB) is the bacterial complex I 20 kDa subunit family protein, similar to mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
Gene Ontology:  GO:0051539|GO:0048038|GO:0008137|GO:0045271
PubMed:  23417064|1470679|33957129
SCOP:  4007641

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
63-213 9.41e-111

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 314.61  E-value: 9.41e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK06411  21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187281616 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213
Cdd:PRK06411 101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGER 171
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
63-213 9.41e-111

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 314.61  E-value: 9.41e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK06411  21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187281616 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213
Cdd:PRK06411 101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGER 171
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 64-212 7.50e-106

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 300.94  E-value: 7.50e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEY 150
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 63-204 1.24e-101

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 290.02  E-value: 1.24e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616   63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG-VVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:TIGR01957   3 LLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQM 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187281616  142 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRE 204
Cdd:TIGR01957  83 PEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
89-197 5.95e-37

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 125.39  E-value: 5.95e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616   89 CAVEMMHMAAPRYDM-----DRFGVVFRASPR----QSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 187281616  160 YH----YSYSvVRGCDRIVPVDIYIPGCPPTAEALLYGILQL 197
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
63-213 9.41e-111

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 314.61  E-value: 9.41e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK06411  21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187281616 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213
Cdd:PRK06411 101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGER 171
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 64-212 7.50e-106

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 300.94  E-value: 7.50e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEY 150
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 63-204 1.24e-101

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 290.02  E-value: 1.24e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616   63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG-VVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:TIGR01957   3 LLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQM 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187281616  142 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRE 204
Cdd:TIGR01957  83 PEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
64-205 2.04e-70

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 212.46  E-value: 2.04e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK14816  28 VGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLYDQMA 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187281616 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRER 205
Cdd:PRK14816 108 DPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 170
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
67-212 3.18e-69

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 212.54  E-value: 3.18e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  67 LDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 145
Cdd:PRK14819  21 VNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPR 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187281616 146 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQI-WYR 212
Cdd:PRK14819 101 YVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQSLGRVrWYG 168
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 62-205 1.19e-68

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 207.88  E-value: 1.19e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:PRK14818  16 LHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQM 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187281616 142 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRER 205
Cdd:PRK14818  96 PEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEP 159
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 58-205 9.51e-68

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 205.89  E-value: 9.51e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  58 SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137
Cdd:PRK14813   9 SNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRL 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187281616 138 YDQMPEPRYVVSMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRER 205
Cdd:PRK14813  89 YEQMPEPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQ 157
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 60-208 1.50e-66

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 202.83  E-value: 1.50e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  60 GEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVY 138
Cdd:PRK14815  16 GNVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRIY 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616 139 DQMPEPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
Cdd:PRK14815  96 DQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAAR 164
ndhK CHL00023
NADH dehydrogenase subunit K
 67-204 1.18e-64

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 199.55  E-value: 1.18e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  67 LDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 146
Cdd:CHL00023  22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKY 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 187281616 147 VVSMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRE 204
Cdd:CHL00023 102 VIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
63-206 3.08e-64

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 211.94  E-value: 3.08e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:PRK13292   8 LLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSILRLYEQM 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 187281616 142 PEPRYVVSMGSCANGGGYYHYsYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERR 206
Cdd:PRK13292  88 AEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREER 151
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
48-206 4.51e-54

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 170.78  E-value: 4.51e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  48 KARAVAPKPSSRGE-YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG---VVFraSPRQSDVMIVA 123
Cdd:PRK14820   3 DIKIVEAPEGYEGEgFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGserPSF--SPRQADMLMVM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616 124 GTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKR 203
Cdd:PRK14820  81 GTIAKKMAPVLKQVYLQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKN 159


                 ....*
gi 187281616 204 E--RR 206
Cdd:PRK14820 160 EslRR 164
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 64-204 1.06e-53

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 170.21  E-value: 1.06e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRA-SPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK14814  20 LGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLGTITYKMAPVLRQIYDQMA 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187281616 143 EPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRE 204
Cdd:PRK14814 100 EPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQ 160
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
53-204 3.06e-52

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 166.29  E-value: 3.06e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  53 APKPSSRGEYVVAKLDDLVN----WARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVF-RASPRQSDVMIVAGTLT 127
Cdd:PRK14817   7 LPVIATRREEAEGFLQGLVSkslgWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVN 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187281616 128 NKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRE 204
Cdd:PRK14817  87 CKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQ 162
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
89-206 6.71e-52

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 163.81  E-value: 6.71e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 168
Cdd:COG3260   20 CEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCACSGGVFRDSYAVLG 99

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 187281616 169 GCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERR 206
Cdd:COG3260  100 GVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
89-197 5.95e-37

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 125.39  E-value: 5.95e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616   89 CAVEMMHMAAPRYDM-----DRFGVVFRASPR----QSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 187281616  160 YH----YSYSvVRGCDRIVPVDIYIPGCPPTAEALLYGILQL 197
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
83-197 6.91e-09

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 54.16  E-value: 6.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616  83 TFGLACCavEMMHMA-----------APRYDMDRFGVV--FRASPRQSDVMIVAGTLTNK----MAPALRKVydqmpePR 145
Cdd:COG1941    8 TYWLAGC--SGCQLSfldlderlldlLELVEIVYFPEAsdVKEIPEPVDVALVEGSIRNEeneeRLKEIREK------SK 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187281616 146 YVVSMGSCANGGG----------------YYHYSYSV---------------VRGCDRIVPVDIYIPGCPPTAEALLYGI 194
Cdd:COG1941   80 ILVALGACAVTGGipalrnlydleellerVYGETPSTnpqipgeelpelldrVRPLSEVVKVDYELPGCPPDPDQILEVL 159


                 ...
gi 187281616 195 LQL 197
Cdd:COG1941  160 TAL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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