NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|254587936|ref|NP_079710|]
View 

small ribosomal subunit protein bS1m [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MRP-S35 pfam10246
Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal ...
 73-177 2.47e-69

Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.


:

Pssm-ID: 402037 [Multi-domain]  Cd Length: 105  Bit Score: 205.82  E-value: 2.47e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254587936   73 PKPVESFASMLRHSPLTQLGPAKDKLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRF 152
Cdd:pfam10246   1 PKPVESFASLLRNSKLTQLGPAKGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRPAVDGEKYQRGARVRLRLLDLELTSRF 80

                          90       100
                  ....*....|....*....|....*
gi 254587936  153 LGGTTDTTILEADAVLLGLQEIRDS 177
Cdd:pfam10246  81 LGSTTDTTLLEADAVLLGLLESKDS 105
 
Name Accession Description Interval E-value
MRP-S35 pfam10246
Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal ...
 73-177 2.47e-69

Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.


Pssm-ID: 402037 [Multi-domain]  Cd Length: 105  Bit Score: 205.82  E-value: 2.47e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254587936   73 PKPVESFASMLRHSPLTQLGPAKDKLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRF 152
Cdd:pfam10246   1 PKPVESFASLLRNSKLTQLGPAKGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRPAVDGEKYQRGARVRLRLLDLELTSRF 80

                          90       100
                  ....*....|....*....|....*
gi 254587936  153 LGGTTDTTILEADAVLLGLQEIRDS 177
Cdd:pfam10246  81 LGSTTDTTLLEADAVLLGLLESKDS 105
 
Name Accession Description Interval E-value
MRP-S35 pfam10246
Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal ...
 73-177 2.47e-69

Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.


Pssm-ID: 402037 [Multi-domain]  Cd Length: 105  Bit Score: 205.82  E-value: 2.47e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254587936   73 PKPVESFASMLRHSPLTQLGPAKDKLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRF 152
Cdd:pfam10246   1 PKPVESFASLLRNSKLTQLGPAKGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRPAVDGEKYQRGARVRLRLLDLELTSRF 80

                          90       100
                  ....*....|....*....|....*
gi 254587936  153 LGGTTDTTILEADAVLLGLQEIRDS 177
Cdd:pfam10246  81 LGSTTDTTLLEADAVLLGLLESKDS 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH