NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|13384984|ref|NP_079831|]
View 

UPF0690 protein C1orf52 homolog isoform 1 [Mus musculus]

Protein Classification

DUF4660 domain-containing protein( domain architecture ID 10634692)

DUF4660 domain-containing protein similar to Homo sapiens UPF0690 protein C1orf52 (also called BCL10-associated gene protein)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4660 pfam15559
Domain of unknown function (DUF4660); This family of proteins is found in eukaryotes. Proteins ...
 33-125 6.09e-39

Domain of unknown function (DUF4660); This family of proteins is found in eukaryotes. Proteins in this family are typically between 93 and 189 amino acids in length.


:

Pssm-ID: 464769  Cd Length: 107  Bit Score: 128.73  E-value: 6.09e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384984    33 GRKEAASAPTTGGRGKqaekRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNCVPPPETYTTE 112
Cdd:pfam15559  17 TKKEAESSANSTAKGI----KLPDPDELFRSVSRPSFLYNPLNKQIDWESRTVKAPEEPPKEFKPWKTNAVPPPESYTTE 92

                          90
                  ....*....|....*
gi 13384984   113 --KKPPPPELDMAIK 125
Cdd:pfam15559  93 ekKKPPPPGMDMAIK 107
 
Name Accession Description Interval E-value
DUF4660 pfam15559
Domain of unknown function (DUF4660); This family of proteins is found in eukaryotes. Proteins ...
 33-125 6.09e-39

Domain of unknown function (DUF4660); This family of proteins is found in eukaryotes. Proteins in this family are typically between 93 and 189 amino acids in length.


Pssm-ID: 464769  Cd Length: 107  Bit Score: 128.73  E-value: 6.09e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384984    33 GRKEAASAPTTGGRGKqaekRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNCVPPPETYTTE 112
Cdd:pfam15559  17 TKKEAESSANSTAKGI----KLPDPDELFRSVSRPSFLYNPLNKQIDWESRTVKAPEEPPKEFKPWKTNAVPPPESYTTE 92

                          90
                  ....*....|....*
gi 13384984   113 --KKPPPPELDMAIK 125
Cdd:pfam15559  93 ekKKPPPPGMDMAIK 107
 
Name Accession Description Interval E-value
DUF4660 pfam15559
Domain of unknown function (DUF4660); This family of proteins is found in eukaryotes. Proteins ...
 33-125 6.09e-39

Domain of unknown function (DUF4660); This family of proteins is found in eukaryotes. Proteins in this family are typically between 93 and 189 amino acids in length.


Pssm-ID: 464769  Cd Length: 107  Bit Score: 128.73  E-value: 6.09e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384984    33 GRKEAASAPTTGGRGKqaekRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNCVPPPETYTTE 112
Cdd:pfam15559  17 TKKEAESSANSTAKGI----KLPDPDELFRSVSRPSFLYNPLNKQIDWESRTVKAPEEPPKEFKPWKTNAVPPPESYTTE 92

                          90
                  ....*....|....*
gi 13384984   113 --KKPPPPELDMAIK 125
Cdd:pfam15559  93 ekKKPPPPGMDMAIK 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH