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Conserved domains on  [gi|34850068|ref|NP_080988|]
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zinc finger protein 414 [Mus musculus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 707588)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0003677|GO:0046872
PubMed:  11179890|12665246|11361095|10940247
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-C2H2_8 super family cl25789
C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.
 100-194 3.79e-56

C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.


The actual alignment was detected with superfamily member pfam15909:

Pssm-ID: 464935 [Multi-domain]  Cd Length: 98  Bit Score: 176.46  E-value: 3.79e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34850068   100 PCSSPGCCLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTESFPSMQELVAHGKLHYKPNRYFKCENCLLRFRTHR 179
Cdd:pfam15909   1 PCSSPGCCLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTETFPSMQELVAHSKLHYKPNRYFKCENCLLRFRTHR 80

                          90
                  ....*....|....*
gi 34850068   180 SLFKHLHVCIDHGQN 194
Cdd:pfam15909  81 SLFKHLHVCAEHAQS 95
 
Name Accession Description Interval E-value
zf-C2H2_8 pfam15909
C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.
 100-194 3.79e-56

C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.


Pssm-ID: 464935 [Multi-domain]  Cd Length: 98  Bit Score: 176.46  E-value: 3.79e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34850068   100 PCSSPGCCLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTESFPSMQELVAHGKLHYKPNRYFKCENCLLRFRTHR 179
Cdd:pfam15909   1 PCSSPGCCLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTETFPSMQELVAHSKLHYKPNRYFKCENCLLRFRTHR 80

                          90
                  ....*....|....*
gi 34850068   180 SLFKHLHVCIDHGQN 194
Cdd:pfam15909  81 SLFKHLHVCAEHAQS 95
 
Name Accession Description Interval E-value
zf-C2H2_8 pfam15909
C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.
 100-194 3.79e-56

C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.


Pssm-ID: 464935 [Multi-domain]  Cd Length: 98  Bit Score: 176.46  E-value: 3.79e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34850068   100 PCSSPGCCLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTESFPSMQELVAHGKLHYKPNRYFKCENCLLRFRTHR 179
Cdd:pfam15909   1 PCSSPGCCLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTETFPSMQELVAHSKLHYKPNRYFKCENCLLRFRTHR 80

                          90
                  ....*....|....*
gi 34850068   180 SLFKHLHVCIDHGQN 194
Cdd:pfam15909  81 SLFKHLHVCAEHAQS 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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