|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
168-229 |
3.11e-27 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 104.99 E-value: 3.11e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 269973927 168 DRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG-KAVIINKT 229
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
152-229 |
1.37e-14 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 69.64 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 152 IDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINdNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKA--VIINKT 229
Cdd:smart00393 1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGPKrrVVISKK 79
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
424-755 |
1.44e-11 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 68.50 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 424 QHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQAEDLSNPFGQmslsrQGSTEAADPSSALFQP-PLISQHPQQASFIM 502
Cdd:pfam09606 148 RMQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGG-----QQGPMGGQMPPQMGVPgMPGPADAGAQMGQQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 503 ASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQppQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQASQQ--P 580
Cdd:pfam09606 223 AQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQ--SQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMPNVmsI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 581 GLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQ---GLVVQYTPLPSYQVPVGSDSQNVVQP---SFQQPML 654
Cdd:pfam09606 301 GDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVValgGLNHLETWNPGNFGGLGANPMQRGQPgmmSSPSPVP 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 655 VPASQSVQG--GLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMSQQYSGVSPSG-PGVVVM 731
Cdd:pfam09606 381 GQQVRQVTPnqFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQRTIGQDSPGGSLNtPGQSAV 460
|
330 340
....*....|....*....|....
gi 269973927 732 qlNVPNGPQAPQNPSMVQWSHCKY 755
Cdd:pfam09606 461 --NSPLNPQEEQLYREKYRQLTKY 482
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
170-228 |
1.35e-10 |
|
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 460206 Cd Length: 60 Bit Score: 57.50 E-value: 1.35e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 269973927 170 MMLLKLEQEILDFINDNNNQFKkFPQMTSYHRMLLHRVAAYFGMDHNV--DQTGKAVIINK 228
Cdd:pfam01424 1 EFLEQLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVVYK 60
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
417-584 |
1.03e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 49.70 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 417 PALPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQAEDlsnpFGQMSLSRQGSTEAADPSSALFQPPLISQHPQ 496
Cdd:PRK10263 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEG----YPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 497 QASFIMASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQiqvsyyPPGQYPNSNQQYRPLSHPVAYSPQRgQQLPQA 576
Cdd:PRK10263 412 AEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ------STFAPQSTYQTEQTYQQPAAQEPLY-QQPQPV 484
|
....*...
gi 269973927 577 SQQPGLQP 584
Cdd:PRK10263 485 EQQPVVEP 492
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
461-630 |
1.45e-04 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 45.57 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 461 LSNPFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASfimasAGQPLptsNYstsshaPPTQQVLPPQGYMQPPQQIQ 540
Cdd:TIGR01628 371 LQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQF-----NGQPL---GW------PRMSMMPTPMGPGGPLRPNG 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 541 VSYYPPGQYPNSNQQYRPLSHPVA---YSPQ-RGQQLPQASQQPGLQPMMSNQQQTAYQgMLGVQQPQnqgllsNQRSSM 616
Cdd:TIGR01628 437 LAPMNAVRAPSRNAQNAAQKPPMQpvmYPPNyQSLPLSQDLPQPQSTASQGGQNKKLAQ-VLASATPQ------MQKQVL 509
|
170
....*....|....
gi 269973927 617 GGQMQGLVVQYTPL 630
Cdd:TIGR01628 510 GERLFPLVEAIEPA 523
|
|
| Amelin |
smart00817 |
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ... |
472-607 |
3.97e-03 |
|
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.
Pssm-ID: 214832 [Multi-domain] Cd Length: 411 Bit Score: 40.64 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 472 RQGSTEAADPSSALFQPPLISQHPQQAsfimasagqPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPN 551
Cdd:smart00817 82 REHETQQYEYSLPVHPPPLPSQPSLQP---------QQPGLKPFLQPTALPTNQATPQKNGPQPPMHLGQPPLQQAELPM 152
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 269973927 552 SNQQYRPLSHP-------VAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQG 607
Cdd:smart00817 153 IPPQVAPSDKPpqtelplYDFADPQNPLLFQIAHLMSRGPMPQNKQQHLYPGLFYMSYGANQL 215
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
168-229 |
3.11e-27 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 104.99 E-value: 3.11e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 269973927 168 DRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG-KAVIINKT 229
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
152-229 |
1.37e-14 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 69.64 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 152 IDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINdNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKA--VIINKT 229
Cdd:smart00393 1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGPKrrVVISKK 79
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
424-755 |
1.44e-11 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 68.50 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 424 QHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQAEDLSNPFGQmslsrQGSTEAADPSSALFQP-PLISQHPQQASFIM 502
Cdd:pfam09606 148 RMQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGQAGGMNGG-----QQGPMGGQMPPQMGVPgMPGPADAGAQMGQQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 503 ASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQppQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQASQQ--P 580
Cdd:pfam09606 223 AQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQ--SQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMPNVmsI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 581 GLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQ---GLVVQYTPLPSYQVPVGSDSQNVVQP---SFQQPML 654
Cdd:pfam09606 301 GDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVValgGLNHLETWNPGNFGGLGANPMQRGQPgmmSSPSPVP 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 655 VPASQSVQG--GLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMSQQYSGVSPSG-PGVVVM 731
Cdd:pfam09606 381 GQQVRQVTPnqFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQRTIGQDSPGGSLNtPGQSAV 460
|
330 340
....*....|....*....|....
gi 269973927 732 qlNVPNGPQAPQNPSMVQWSHCKY 755
Cdd:pfam09606 461 --NSPLNPQEEQLYREKYRQLTKY 482
|
|
| R3H |
cd02325 |
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ... |
172-228 |
3.69e-11 |
|
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100064 Cd Length: 59 Bit Score: 59.16 E-value: 3.69e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 269973927 172 LLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG--KAVIINK 228
Cdd:cd02325 1 REEREEELEAFAKDAAGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGpnRRVVITK 59
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
170-228 |
1.35e-10 |
|
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 460206 Cd Length: 60 Bit Score: 57.50 E-value: 1.35e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 269973927 170 MMLLKLEQEILDFINDNNNQFKkFPQMTSYHRMLLHRVAAYFGMDHNV--DQTGKAVIINK 228
Cdd:pfam01424 1 EFLEQLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVVYK 60
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
417-654 |
7.66e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 53.12 E-value: 7.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 417 PALPPTPQHQPPL----NNHMISQPVPALQPS------PQPVQFSPSSCPQAEDLSNPFGQ-----MSLSRqgsTEAAdp 481
Cdd:pfam09770 128 YASQQSQQPSKPVrtgyEKYKEPEPIPDLQVDaslwgvAPKKAAAPAPAPQPAAQPASLPApsrkmMSLEE---VEAA-- 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 482 ssALFQPPLISQHPQQASfimasAGQPlptsnystssHAPPTQQVLPPQGYMQPPQQIQvsyyPPGQYPNSNQQYRPLSH 561
Cdd:pfam09770 203 --MRAQAKKPAQQPAPAP-----AQPP----------AAPPAQQAQQQQQFPPQIQQQQ----QPQQQPQQPQQHPGQGH 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 562 PVAYspqrgQQLPQASQQPGLQPMMSNQQQTAYQGMLGV-QQP----QNQGLLSNQRSSMGGQMQGlVVQYTPLPSYQVP 636
Cdd:pfam09770 262 PVTI-----LQRPQSPQPDPAQPSIQPQAQQFHQQPPPVpVQPtqilQNPNRLSAARVGYPQNPQP-GVQPAPAHQAHRQ 335
|
250
....*....|....*...
gi 269973927 637 VGSDSQNVVQPSFQQPML 654
Cdd:pfam09770 336 QGSFGRQAPIITHPQQLA 353
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
417-584 |
1.03e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 49.70 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 417 PALPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQAEDlsnpFGQMSLSRQGSTEAADPSSALFQPPLISQHPQ 496
Cdd:PRK10263 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEG----YPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 497 QASFIMASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQiqvsyyPPGQYPNSNQQYRPLSHPVAYSPQRgQQLPQA 576
Cdd:PRK10263 412 AEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ------STFAPQSTYQTEQTYQQPAAQEPLY-QQPQPV 484
|
....*...
gi 269973927 577 SQQPGLQP 584
Cdd:PRK10263 485 EQQPVVEP 492
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
376-803 |
1.26e-05 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 49.29 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 376 PGMALGAPEVCNQVTSPQSVRGLLPCTAQQQQQqqqqqqqLPALPPTPQHQP-PLNNHMISQPVPALQPSPQPVQfspsS 454
Cdd:PHA03379 409 SEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQ-------VPEPPPVHDLEPgPLHDQHSMAPCPVAQLPPGPLQ----D 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 455 CPQAEDLSNPFgqmSLSRQGSTEAADPSSALFQP--PLISQHPQQASFI-----MASAGQPLPTSNYSTSSHAPPTQQVL 527
Cdd:PHA03379 478 LEPGDQLPGVV---QDGRPACAPVPAPAGPIVRPweASLSQVPGVAFAPvmpqpMPVEPVPVPTVALERPVCPAPPLIAM 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 528 PPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLshPVAYSPQRGQQLPQASQQP-GLQPMMSNQQQTayqgmlgvQQPQNQ 606
Cdd:PHA03379 555 QGPGETSGIVRVRERWRPAPWTPNPPRSPSQM--SVRDRLARLRAEAQPYQASvEVQPPQLTQVSP--------QQPMEY 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 607 GLLSNQRSSMGGQMQGL--VVQYTPLPSYQVPvgSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQ-- 682
Cdd:PHA03379 625 PLEPEQQMFPGSPFSQVadVMRAGGVPAMQPQ--YFDLPLQQPISQGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPin 702
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 683 NGTSPSVGFLQPPGS-------EQYQMPQSPSPCSPPQMSQQYSGVSPSGPgvvvMQLNVPNGPQAPQNPSMVQWshcky 755
Cdd:PHA03379 703 QGASAAHFLPQQPMEgplvperWMFQGATLSQSVRPGVAQSQYFDLPLTQP----INHGAPAAHFLHQPPMEGPW----- 773
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 269973927 756 ysVEQRGQKPGDLYSPdGSPQANAQMGSSPVTSPTQSPAPSPVTSLSN 803
Cdd:PHA03379 774 --VPEQWMFQGAPPSQ-GTDVVQHQLDALGYVLHVLNHPGVPVSPAVN 818
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
410-697 |
3.93e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 47.84 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 410 QQQQQQLPALPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQAEDLSNPFGQMSLSRQGST-------EAADPS 482
Cdd:pfam03154 170 QPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTlhpqrlpSPHPPL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 483 SALFQPPLISQHPQQA--SFIMASAGQPLPTSNYSTSSHAPptqQVLPPQGYMQPPQ--QIQVSYYPPGQYPNSNQQ--Y 556
Cdd:pfam03154 250 QPMTQPPPPSQVSPQPlpQPSLHGQMPPMPHSLQTGPSHMQ---HPVPPQPFPLTPQssQSQVPPGPSPAAPGQSQQriH 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 557 RPLSHPVAYSPQ--RGQQLPQASQQ------------PGLQPMMSNQQQTAYQGMLGVQQPQN----------QGLLSNQ 612
Cdd:pfam03154 327 TPPSQSQLQSQQppREQPLPPAPLSmphikpppttpiPQLPNPQSHKHPPHLSGPSPFQMNSNlppppalkplSSLSTHH 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 613 RSSMGGQMQGLVVQYTPLPS--YQVPVGSDSQNVVQPSFQQPmlvPASQSVQGG----------LPTGGVPVYYSMIPPA 680
Cdd:pfam03154 407 PPSAHPPPLQLMPQSQQLPPppAQPPVLTQSQSLPPPAASHP---PTSGLHQVPsqspfpqhpfVPGGPPPITPPSGPPT 483
|
330
....*....|....*..
gi 269973927 681 QqngTSPSVGFLQPPGS 697
Cdd:pfam03154 484 S---TSSAMPGIQPPSS 497
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
481-632 |
6.55e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.00 E-value: 6.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 481 PSSALFQPPLI-SQHPQQasfimasagQPLPTSNYSTSSH-APPTQQVLPPQGYMQPPQQiqvsYYPPGQYPNSNQQYRP 558
Cdd:PRK10263 740 PHEPLFTPIVEpVQQPQQ---------PVAPQQQYQQPQQpVAPQPQYQQPQQPVAPQPQ----YQQPQQPVAPQPQYQQ 806
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 269973927 559 LSHPVAYSPQRGQ-QLPQASQQPGLQPmmsnQQQTAyqgmlgvqqPQNQGLLSNQRSSMGGQMQGLVVQYTPLPS 632
Cdd:PRK10263 807 PQQPVAPQPQYQQpQQPVAPQPQYQQP----QQPVA---------PQPQDTLLHPLLMRNGDSRPLHKPTTPLPS 868
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
461-630 |
1.45e-04 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 45.57 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 461 LSNPFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASfimasAGQPLptsNYstsshaPPTQQVLPPQGYMQPPQQIQ 540
Cdd:TIGR01628 371 LQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQF-----NGQPL---GW------PRMSMMPTPMGPGGPLRPNG 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 541 VSYYPPGQYPNSNQQYRPLSHPVA---YSPQ-RGQQLPQASQQPGLQPMMSNQQQTAYQgMLGVQQPQnqgllsNQRSSM 616
Cdd:TIGR01628 437 LAPMNAVRAPSRNAQNAAQKPPMQpvmYPPNyQSLPLSQDLPQPQSTASQGGQNKKLAQ-VLASATPQ------MQKQVL 509
|
170
....*....|....
gi 269973927 617 GGQMQGLVVQYTPL 630
Cdd:TIGR01628 510 GERLFPLVEAIEPA 523
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
420-674 |
1.90e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.46 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 420 PPTPQHQPPLNNHMISQPVPALQPSPQPVQfspsscpqaedlsnpfgqmslSRQGSTEAADPSSALFQPPLISQHPQqas 499
Cdd:PRK10263 302 PEYDEYDPLLNGAPITEPVAVAAAATTATQ---------------------SWAAPVEPVTQTPPVASVDVPPAQPT--- 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 500 fimaSAGQPLPTSNYSTSSHAPPtqqvlpPQGYMQPPQ--QIQVSYYPPGQYPNSNQQyrPLSHPVAYSPQRGQQLPQAS 577
Cdd:PRK10263 358 ----VAWQPVPGPQTGEPVIAPA------PEGYPQQSQyaQPAVQYNEPLQQPVQPQQ--PYYAPAAEQPAQQPYYAPAP 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 578 QQPGLQPMMSNQQQTAYQGMLGVQQPQNQgLLSNQRSsmggqmqglvvqYTPLPSYQVPVGSDSQNVVQPSFQQPMLVPA 657
Cdd:PRK10263 426 EQPAQQPYYAPAPEQPVAGNAWQAEEQQS-TFAPQST------------YQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP 492
|
250
....*....|....*..
gi 269973927 658 SQSVQGGLPTGGvPVYY 674
Cdd:PRK10263 493 EPVVEETKPARP-PLYY 508
|
|
| G_path_suppress |
pfam15991 |
G-protein pathway suppressor; This family of proteins inhibits G-protein- and ... |
421-586 |
1.79e-03 |
|
G-protein pathway suppressor; This family of proteins inhibits G-protein- and mitogen-activated protein kinase-mediated signal transduction.
Pssm-ID: 464961 [Multi-domain] Cd Length: 272 Bit Score: 41.44 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 421 PTPQHQPPLNnhMISQPVPALQPSPQPVQFSPSSCPQAEDLSNPFgqmslsrQGSTeAADPSSALFQPPLISQHPQQASF 500
Cdd:pfam15991 108 AAQVFLPQLS--MQGQPHHQQHPGPQVGVLKRTRSPSPPVQQQAY-------YKQP-AFSPGYAEHGQQKHDDGRRGYDV 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 501 IMASAGQPLPTSNYSTSSHAPPTQQVLPP-QGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAY---SPQRGQQLPQA 576
Cdd:pfam15991 178 ARFGSWNKSTAQYPPSGQLFYPTHQYLPPpQTQGQADARLQTIYPQPGYALPLQQQYEHANQPSPFvssSPLKQMQSPKA 257
|
170
....*....|..
gi 269973927 577 --SQQPGLQPMM 586
Cdd:pfam15991 258 gpGPQPMQLSVL 269
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
457-698 |
2.16e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 457 QAEDLSNPFGQMSLSRQGST-------EAADPSSALfQPPLISQ--HPQQASFimaSAGQPLPTSNYSTSSHAPPTQQVL 527
Cdd:PRK10263 660 QQDELARQFAQTQQQRYGEQyqhdvpvNAEDADAAA-EAELARQfaQTQQQRY---SGEQPAGANPFSLDDFEFSPMKAL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 528 PPQGYMQPpqqiqvsYYPPGQYPNSNQQYRPLSHPVAYSPQRgqqlPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQG 607
Cdd:PRK10263 736 LDDGPHEP-------LFTPIVEPVQQPQQPVAPQQQYQQPQQ----PVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 608 LLSNQrssmggqmqglvvQYTPLPSYQVPvgsDSQNVVQPSFQQPMLVPASQSVQgglptggvpvyySMIPP-AQQNGTS 686
Cdd:PRK10263 805 QQPQQ-------------PVAPQPQYQQP---QQPVAPQPQYQQPQQPVAPQPQD------------TLLHPlLMRNGDS 856
|
250 260
....*....|....*....|..
gi 269973927 687 ----------PSVGFLQPPGSE 698
Cdd:PRK10263 857 rplhkpttplPSLDLLTPPPSE 878
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
568-698 |
3.63e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 40.95 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 568 QRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQ----PQNQGLLSNQRSSMGGQMQGLVVQYTPLPSYQVPvGSDSQN 643
Cdd:TIGR01628 374 QFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQfngqPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAP-SRNAQN 452
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 269973927 644 VVQPSFQQPMlvPASQSVQGGLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSE 698
Cdd:TIGR01628 453 AAQKPPMQPV--MYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQ 505
|
|
| Amelin |
smart00817 |
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ... |
472-607 |
3.97e-03 |
|
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.
Pssm-ID: 214832 [Multi-domain] Cd Length: 411 Bit Score: 40.64 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 472 RQGSTEAADPSSALFQPPLISQHPQQAsfimasagqPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPN 551
Cdd:smart00817 82 REHETQQYEYSLPVHPPPLPSQPSLQP---------QQPGLKPFLQPTALPTNQATPQKNGPQPPMHLGQPPLQQAELPM 152
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 269973927 552 SNQQYRPLSHP-------VAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQG 607
Cdd:smart00817 153 IPPQVAPSDKPpqtelplYDFADPQNPLLFQIAHLMSRGPMPQNKQQHLYPGLFYMSYGANQL 215
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
453-823 |
4.70e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 40.91 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 453 SSCPQAEDLSNPFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASFIMASAGQPLPTSNYSTSSHAP-PTQQVLPPQG 531
Cdd:pfam03154 131 SSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPtPSAPSVPPQG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 532 Y---MQPPQQIQVSYYPPG---QYPNSNQQYRPLSHP----VAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQ 601
Cdd:pfam03154 211 SpatSQPPNQTQSTAAPHTliqQTPTLHPQRLPSPHPplqpMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQ 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 602 QP-QNQGLLSNQRSSMGgqmqglvvQYTPLPSYQVPVGSDSQNVVQPSfqQPMLVPASQSVQGGLPTGGVPVYYSMIPPa 680
Cdd:pfam03154 291 HPvPPQPFPLTPQSSQS--------QVPPGPSPAAPGQSQQRIHTPPS--QSQLQSQQPPREQPLPPAPLSMPHIKPPP- 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 681 qqngTSPsVGFLQPPGSEQYQMPQspspcsppqmsqqysgvspSGPGVVVMQLNVPNGPQapqnpsmvqwshCKYYSVEQ 760
Cdd:pfam03154 360 ----TTP-IPQLPNPQSHKHPPHL-------------------SGPSPFQMNSNLPPPPA------------LKPLSSLS 403
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 269973927 761 RGQKPGDLYSPDGSPQANAQMGSSPVTSP--TQSPAPSPVTSLSNVCTGLSPLPVLTPFPR----PGGP 823
Cdd:pfam03154 404 THHPPSAHPPPLQLMPQSQQLPPPPAQPPvlTQSQSLPPPAASHPPTSGLHQVPSQSPFPQhpfvPGGP 472
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
417-691 |
4.72e-03 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 40.81 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 417 PALPPTPQHQPPLNNHMISQPVPALQPSP-QPVQFSPSSCPQAedlsnpfgqMSLSRQGSTEAADPSSALFQPPLISQHP 495
Cdd:PHA03377 672 PATQSTPPRPSWLPSVFVLPSVDAGRAQPsEESHLSSMSPTQP---------ISHEEQPRYEDPDDPLDLSLHPDQAPPP 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 496 QQASFIMASAGQPLPTSNYSTSSHAPPTQqvLPPQGYMQPP-QQIQVSYYPPGQYP-NSNQQYRPLSHPVAYSPQR---- 569
Cdd:PHA03377 743 SHQAPYSGHEEPQAQQAPYPGYWEPRPPQ--APYLGYQEPQaQGVQVSSYPGYAGPwGLRAQHPRYRHSWAYWSQYpghg 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 570 GQQLPQASQQPGLQPmmsnqqqtAYQGMLGVQQPQNQGLLSNQRSSMGGQMQGLVVQYTPLPsyQVPVGSDSQNVVQPSF 649
Cdd:PHA03377 821 HPQGPWAPRPPHLPP--------QWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYS--QTLVSSSAPSWSSPQP 890
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 269973927 650 QQPMlvpasQSVQGGLPTGGVPVYYSMIPPAQQNGTS-PSVGF 691
Cdd:PHA03377 891 RAPI-----RPIPTRFPPPPMPLQDSMAVGCDSSGTAcPSMPF 928
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
467-695 |
6.03e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 40.40 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 467 QMSLSRQGSTEAADPSSALfQPPLISQHPQQASFIMASAGQPLPTS--NYSTSSHAPPTQ--QVL---PPQGYMQPPQQI 539
Cdd:pfam09770 99 QVRFNRQQPAARAAQSSAQ-PPASSLPQYQYASQQSQQPSKPVRTGyeKYKEPEPIPDLQvdASLwgvAPKKAAAPAPAP 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 540 QVSYYPPGQYPNSNQ---------QYRplshpvAYSPQRGQQLPQASQQP--GLQPMMSNQQQTAYQGMLGVQQPQNQGL 608
Cdd:pfam09770 178 QPAAQPASLPAPSRKmmsleeveaAMR------AQAKKPAQQPAPAPAQPpaAPPAQQAQQQQQFPPQIQQQQQPQQQPQ 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 609 LSNQRSSMGGQMQGL---------VVQYTPLPSYQVPVGSDSQNVVQPS--FQQPMLVPASQSVQGGLPTGGVPVyysmi 677
Cdd:pfam09770 252 QPQQHPGQGHPVTILqrpqspqpdPAQPSIQPQAQQFHQQPPPVPVQPTqiLQNPNRLSAARVGYPQNPQPGVQP----- 326
|
250
....*....|....*...
gi 269973927 678 PPAQQNGTSPSVGFLQPP 695
Cdd:pfam09770 327 APAHQAHRQQGSFGRQAP 344
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
380-580 |
6.26e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 40.33 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 380 LGAPEVCNQVTSPQSVRGLLPCTAQQQQQQQQQQQQlPALPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQAE 459
Cdd:PRK14948 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAP-KTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 460 D---------LSN---PFGQMSLSRQGSTEAADPSSALFQ------------PPLIS-------QHPQQASFIMASAGQP 508
Cdd:PRK14948 439 LnleelwqqiLAKlelPSTRMLLSQQAELVSLDSNRAVIAvspnwlgmvqsrKPLLEqafakvlGRSIKLNLESQSGSAS 518
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 269973927 509 lptsnySTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQASQQP 580
Cdd:PRK14948 519 ------NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEP 584
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
416-528 |
7.50e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.31 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 269973927 416 LPALPPTPQHQPPLnnhmisqPVPALQPSPQPVQFSPSSCPQAEDLSNPFGQMSLSRQGSTEaadPSSALFQPPLISQHP 495
Cdd:PHA03247 2900 LPPDQPERPPQPQA-------PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE---PSGAVPQPWLGALVP 2969
|
90 100 110
....*....|....*....|....*....|...
gi 269973927 496 QQASFIMASAGQPLPTSNYSTSSHAPPTQQVLP 528
Cdd:PHA03247 2970 GRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002
|
|
|