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Conserved domains on  [gi|125988383|ref|NP_082511|]
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intraflagellar transport protein 70B [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 2.76e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.45  E-value: 2.76e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 101 VA-FLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLsgegvEDSGGESDYdgQINLGCLLYKEGHYEAACSKFLAA 179
Cdd:COG2956   98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL-----KLGPENAHA--YCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 180 LQASGYQPDLSYNLALAYYSSRQYAPALKHIadiiERGIRQHPELGVGMTTEGIDVRSVGNT--------IVLHQTALVE 251
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPeealellrKALELDPSDD 246

                        250       260
                 ....*....|....*....|....*
gi 125988383 252 AFNLKAAIEYQLRNYEAAQEALTDM 276
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 2.99e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 372 EEAFIKLDGLAGMLTEQLRKL-TIQVQdsrhSRDDESAKKAVNEYDETLEKYIPVLMAQAKIYWNFENYPMVEKIFRKSV 450
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLaEIYEQ----EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 451 EFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQL 530
Cdd:COG2956  172 KLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALELDPSD 245


                 .
gi 125988383 531 S 531
Cdd:COG2956  246 D 246
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 2.76e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.45  E-value: 2.76e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 101 VA-FLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLsgegvEDSGGESDYdgQINLGCLLYKEGHYEAACSKFLAA 179
Cdd:COG2956   98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL-----KLGPENAHA--YCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 180 LQASGYQPDLSYNLALAYYSSRQYAPALKHIadiiERGIRQHPELGVGMTTEGIDVRSVGNT--------IVLHQTALVE 251
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPeealellrKALELDPSDD 246

                        250       260
                 ....*....|....*....|....*
gi 125988383 252 AFNLKAAIEYQLRNYEAAQEALTDM 276
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-216 2.26e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383   15 TAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACL 94
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383   95 YPEA-TRVAFLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLsgegvedSGGESDYDGQINLGCLLYKEGHYEAAC 173
Cdd:TIGR02917 243 FEEAeKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL-------KSAPEYLPALLLAGASEYQLGNLEQAY 315

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 125988383  174 SKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHIADIIER 216
Cdd:TIGR02917 316 QYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 2.99e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 372 EEAFIKLDGLAGMLTEQLRKL-TIQVQdsrhSRDDESAKKAVNEYDETLEKYIPVLMAQAKIYWNFENYPMVEKIFRKSV 450
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLaEIYEQ----EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 451 EFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQL 530
Cdd:COG2956  172 KLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALELDPSD 245


                 .
gi 125988383 531 S 531
Cdd:COG2956  246 D 246
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 2.76e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.45  E-value: 2.76e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 101 VA-FLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLsgegvEDSGGESDYdgQINLGCLLYKEGHYEAACSKFLAA 179
Cdd:COG2956   98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL-----KLGPENAHA--YCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 180 LQASGYQPDLSYNLALAYYSSRQYAPALKHIadiiERGIRQHPELGVGMTTEGIDVRSVGNT--------IVLHQTALVE 251
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPeealellrKALELDPSDD 246

                        250       260
                 ....*....|....*....|....*
gi 125988383 252 AFNLKAAIEYQLRNYEAAQEALTDM 276
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-216 2.96e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.59  E-value: 2.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  11 DGEFTAVVYRLIRD----SRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQA 86
Cdd:COG2956   72 DPDRAEALLELAQDylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  87 QALYKACLYPEATRV--AFLLDNPAYqTRVLRLQAAIKYSEGDLPGARSLVEQLLSGEgvedsggESDYDGQINLGCLLY 164
Cdd:COG2956  152 ELYLEQGDYDEAIEAleKALKLDPDC-ARALLLLAELYLEQGDYEEAIAALERALEQD-------PDYLPALPRLAELYE 223

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 125988383 165 KEGHYEAAcSKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHIADIIER 216
Cdd:COG2956  224 KLGDPEEA-LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 29-140 3.70e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 3.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  29 EAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRV---AFLL 105
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELlerALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 125988383 106 DnpAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLS 140
Cdd:COG4235   81 D--PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 32-329 9.68e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 9.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  32 QLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPAyq 111
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA-- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 112 tRVLRLQAAIKYSEGDLPGARSLVEQLLSGEgvedsggESDYDGQINLGCLLYKEGHYEAACSKFLAALQASGYQPDLSY 191
Cdd:COG3914   79 -ALLELAALLLQALGRYEEALALYRRALALN-------PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 192 NLALAYYSSRQYAPALkhiaDIIERGIRQHPElgvgmttegidvrsvgntivlhqtaLVEAFNLKAAIEYQLRNYEAAQE 271
Cdd:COG3914  151 NLGEALRRLGRLEEAI----AALRRALELDPD-------------------------NAEALNNLGNALQDLGRLEEAIA 201

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 125988383 272 ALTdmppRAeEELDP--VTLHNQALMNM-DAKPTEGFEKLQFLLQQNPFPPETFGNLLLLY 329
Cdd:COG3914  202 AYR----RA-LELDPdnADAHSNLLFALrQACDWEVYDRFEELLAALARGPSELSPFALLY 257
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-344 6.58e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 6.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  46 AGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRV-AFLLDNPAYQTRVLRLQAAIKYS 124
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIhQKLLERDPDRAEALLELAQDYLK 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 125 EGDLPGARSLVEQLLSGEgvedsggESDYDGQINLGCLLYKEGHYEAACSKFLAALQASGYQPDLSYNLALAYYSSRQYA 204
Cdd:COG2956   89 AGLLDRAEELLEKLLELD-------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 205 PALKHiadiIERGIRQHPElgvgmttegidvrsvgntivlhqtaLVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 284
Cdd:COG2956  162 EAIEA----LEKALKLDPD-------------------------CARALLLLAELYLEQGDYEEAIAALERALEQDPDYL 212

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 285 DPVTLHNQALMNMDaKPTEGFEKLQFLLQQNPFPPETFgNLLLLYCKYEYFDLAADVLAE 344
Cdd:COG2956  213 PALPRLAELYEKLG-DPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLER 270
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
26-224 1.87e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.70  E-value: 1.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  26 RYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATrvafll 105
Cdd:COG0457   23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEAL------ 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 106 dnpAYQTRVLRLQAaikysegdlpgarslveqllsgegvedsggeSDYDGQINLGCLLYKEGHYEAACSKFLAALQASGY 185
Cdd:COG0457   97 ---EDYDKALELDP-------------------------------DDAEALYNLGLALLELGRYDEAIEAYERALELDPD 142

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 125988383 186 QPDLSYNLALAYYSSRQYAPALKHIADIIERGIRQHPEL 224
Cdd:COG0457  143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-140 4.85e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 4.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 125988383 101 V--AFLLDNPAYQTRVLRLqAAIKYSEGDLPGARSLVEQLLS 140
Cdd:COG4783   94 LleKALKLDPEHPEAYLRL-ARAYRALGRPDEAIAALEKALE 134
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 21-129 1.51e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.53  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG3914  156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235

                         90       100
                 ....*....|....*....|....*....
gi 125988383 101 VAFLLDNPAYQTRVLRLQAAIkYSEGDLP 129
Cdd:COG3914  236 FEELLAALARGPSELSPFALL-YLPDDDP 263
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 68-216 1.10e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  68 YEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLSGEgveds 147
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD----- 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125988383 148 ggESDYDGQINLGCLLYKEGHYEAACSKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHIADIIER 216
Cdd:COG5010   85 --PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 109-223 2.00e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 2.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 109 AYQTRVLRLQAAIKYSEGDLPGARSLVEQLLSGEgvedsggESDYDGQINLGCLLYKEGHYEAACSKFLAALQASGYQPD 188
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELD-------PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE 73

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 125988383 189 LSYNLALAYYSSRQYAPALKHiadiIERGIRQHPE 223
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALAL----LEKALKLDPE 104
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-216 2.26e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383   15 TAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACL 94
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383   95 YPEA-TRVAFLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLsgegvedSGGESDYDGQINLGCLLYKEGHYEAAC 173
Cdd:TIGR02917 243 FEEAeKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL-------KSAPEYLPALLLAGASEYQLGNLEQAY 315

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 125988383  174 SKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHIADIIER 216
Cdd:TIGR02917 316 QYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 64-223 2.75e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  64 AAECYEQLSQMHPELEQYRlyQAQALYKAclypeatrvafLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLSGEG 143
Cdd:COG4783    3 CAEALYALAQALLLAGDYD--EAEALLEK-----------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 144 vedsggeSDYDGQINLGCLLYKEGHYEAACSKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHiadiIERGIRQHPE 223
Cdd:COG4783   70 -------DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA----LEKALELDPD 138
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-286 4.49e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 4.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383   21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQ------------- 87
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIsklsqgdpseaia 418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383   88 ALYKAC-LYPEATRVAFLL-------------------------DNPAYQTrvlrLQAAIKYSEGDLPGARSLVEQLLSG 141
Cdd:TIGR02917 419 DLETAAqLDPELGRADLLLilsylrsgqfdkalaaakklekkqpDNASLHN----LLGAIYLGKGDLAKAREAFEKALSI 494

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  142 EgvedsggESDYDGQINLGCLLYKEGHYEAACSKFLAALQAsgYQPDLSYNLALAYYSSRQYAPAlKHIAdIIERGIRQH 221
Cdd:TIGR02917 495 E-------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEE-EAVA-WLEKAAELN 563

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125988383  222 PE------------LGVGMTTEGIdvrSVGNTIVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTDMppraeEELDP 286
Cdd:TIGR02917 564 PQeiepalalaqyyLGKGQLKKAL---AILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL-----LALQP 632
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 16-98 1.56e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.52  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  16 AVVYRLIRdsRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG3914  119 GNLLLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196


                 ...
gi 125988383  96 PEA 98
Cdd:COG3914  197 EEA 199
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 19-91 1.67e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.67e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 125988383  19 YRLIRDSRYSEAVQLLSAELQR---SSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPE---LEQYRLYQAQALYK 91
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLE 79
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 21-87 2.00e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 2.00e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125988383  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQ 87
Cdd:COG4235   61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
54-140 2.19e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  54 CYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPAYQTRVLRLQAAIKYSEGDLPGARS 133
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                 ....*..
gi 125988383 134 LVEQLLS 140
Cdd:COG3063   81 YLERALE 87
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 2.99e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 372 EEAFIKLDGLAGMLTEQLRKL-TIQVQdsrhSRDDESAKKAVNEYDETLEKYIPVLMAQAKIYWNFENYPMVEKIFRKSV 450
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLaEIYEQ----EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 451 EFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQL 530
Cdd:COG2956  172 KLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALELDPSD 245


                 .
gi 125988383 531 S 531
Cdd:COG2956  246 D 246
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
121-216 3.37e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 3.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 121 IKYSEGDLPGARSLVEQLLSGEgvedsggESDYDGQINLGCLLYKEGHYEAAcSKFLAALQASGYQPDLSYNLALAYYSS 200
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELD-------PDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLEL 72

                         90
                 ....*....|....*.
gi 125988383 201 RQYAPALKHIADIIER 216
Cdd:COG3063   73 GDYDEALAYLERALEL 88
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-98 3.57e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  16 AVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG5010   59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138


                 ...
gi 125988383  96 PEA 98
Cdd:COG5010  139 DEA 141
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 123-216 4.57e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 4.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 123 YSEGDLPGARSLVEQLLSgegvEDSGGESDYDGQINLGCLLYKEGHYEAACSKFLAALQA---SGYQPDLSYNLALAYYS 199
Cdd:COG1729    4 LKAGDYDEAIAAFKAFLK----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLE 79

                         90
                 ....*....|....*..
gi 125988383 200 SRQYAPALKHIADIIER 216
Cdd:COG1729   80 LGDYDKARATLEELIKK 96
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 386-522 5.42e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.86  E-value: 5.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 386 TEQLRKLTIQVQDSRHSRDDESAKKAVNEYDETLEKYIPVLMAQAKIYWNFENYPMVEKIFRKSVEFCNDHDVWKLNVAH 465
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 125988383 466 VLFMQeNKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRK 522
Cdd:COG4783   81 ALLKA-GDYDEALALLEKALKLDPEH-----PEAYLRLARAYRALGRPDEAIAALEK 131
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 163-216 5.76e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 5.76e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 125988383 163 LYKEGHYEAACSKFLAALQA---SGYQPDLSYNLALAYYSSRQYAPALKHIADIIER 216
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKR 59
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 16-94 7.29e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 7.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383  16 AVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLY----------- 84
Cdd:COG3071  229 VRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELarlleqlgdpe 308

                         90
                 ....*....|
gi 125988383  85 QAQALYKACL 94
Cdd:COG3071  309 EAAEHYRKAL 318
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
152-417 9.41e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.45  E-value: 9.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 152 DYDGQINLGCLLYKEGHYEAACSKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHiadiIERGIRQHPElgvgmtte 231
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALAD----YEQALELDPD-------- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 232 gidvrsvgntivlhqtaLVEAFNLKAAIEYQLRNYEAAQEALT---DMPPRaeeelDPVTLHNQALMNMDA-KPTEGFEK 307
Cdd:COG0457   75 -----------------DAEALNNLGLALQALGRYEEALEDYDkalELDPD-----DAEALYNLGLALLELgRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125988383 308 LQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTE 387
Cdd:COG0457  133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                        250       260       270
                 ....*....|....*....|....*....|
gi 125988383 388 QLRKLTIQVQDSRHSRDDESAKKAVNEYDE 417
Cdd:COG0457  213 ILTLAALAELLLLALALLLALRLAALALYQ 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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