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Conserved domains on  [gi|47058964|ref|NP_082634|]
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single-stranded DNA-binding protein, mitochondrial isoform 2 [Mus musculus]

Protein Classification

single stranded DNA-binding domain-containing protein( domain architecture ID 489)

single stranded DNA-binding domain-containing protein may bind preferentially to single-stranded DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPA_2b-aaRSs_OBF_like super family cl09930
Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with ...
 27-134 4.92e-48

Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.; This superfamily includes two oligonucleotide/oligosaccharide binding fold (OBF) domain families. One of these contains the OBF domains of the large (RPA1, 70kDa), middle (RPA2, RPA4, 32kDa) and small (RPA3, 14 kDa) subunits of human heterotrimeric Replication protein A (RPA), and similar domains. RPA is a nuclear single-strand (ss) DNA-binding protein involved in most aspects of DNA metabolism. This family includes the four OBF domains of RPA1 [DNA-binding domain (DBD)-A, DBD-B, DBD-C, and RPA1N], the OBF domain of RPA2 (RPA2 DBD-D), RPA3, and the OBF domain of RPA4. The major DNA binding activity of human RPA and Saccharomyces cerevisiae RPA appears to be associated with DBD-A and -B, of RPA1. RPA1 DBD-C shows only weak ssDNA-binding activity and is involved in trimerization. The other OBF domain family in this superfamily is the N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids to their cognate tRNAs during protein biosynthesis. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases.


The actual alignment was detected with superfamily member TIGR00621:

Pssm-ID: 471953 [Multi-domain]  Cd Length: 164  Bit Score: 152.57  E-value: 4.92e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964    27 ERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGA 106
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD------GEWKEETEWHDIVIFGR-LAEVAAQYLKKGS 73

                          90       100
                  ....*....|....*....|....*...
gi 47058964   107 RIFVEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:TIGR00621  74 LVYVEGRLRTRKWEDQNGQKRSKTEIIA 101
 
Name Accession Description Interval E-value
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 27-134 4.92e-48

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 152.57  E-value: 4.92e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964    27 ERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGA 106
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD------GEWKEETEWHDIVIFGR-LAEVAAQYLKKGS 73

                          90       100
                  ....*....|....*....|....*...
gi 47058964   107 RIFVEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:TIGR00621  74 LVYVEGRLRTRKWEDQNGQKRSKTEIIA 101
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 30-134 1.57e-31

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 108.48  E-value: 1.57e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964    30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGdsevyqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGARIF 109
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDR-------GEGDEETDFHRVVVFGK-LAEVAAQYLKKGSLVY 72

                          90       100
                  ....*....|....*....|....*
gi 47058964   110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:pfam00436  73 VEGRLQTRKYEDQEGQKRYVTEIVA 97
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 33-134 2.36e-27

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 97.68  E-value: 2.36e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964  33 VQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmgDVSQKTTWHRISVFRPgLRDVAYQYVKKGARIFVEG 112
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRD-------EEEEETDWIRVVAFGK-LAENAAKYLKKGDLVYVEG 72

                        90       100
                ....*....|....*....|..
gi 47058964 113 KVDYGEYMDKNNVRRQATTIIA 134
Cdd:cd04496  73 RLRTRSWEDKDGQKRYGTEVVA 94
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
30-134 5.74e-27

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 97.22  E-value: 5.74e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964  30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRISVFRpGLRDVAYQYVKKGARIF 109
Cdd:COG0629   1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQD------GEWKDETDWHRVVAWG-KLAENAAEYLKKGDKVY 73

                        90       100
                ....*....|....*....|....*
gi 47058964 110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:COG0629  74 VEGRLRTRSWEDKDGQKRYTTEVVA 98
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 29-133 1.33e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 90.25  E-value: 1.33e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSevyqmGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARI 108
Cdd:PRK06341   4 SVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNS-----GERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKV 78

                         90       100
                 ....*....|....*....|....*
gi 47058964  109 FVEGKVDYGEYMDKNNVRRQATTII 133
Cdd:PRK06341  79 YIEGQLQTRKWTDQSGVERYSTEVV 103
 
Name Accession Description Interval E-value
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 27-134 4.92e-48

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 152.57  E-value: 4.92e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964    27 ERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGA 106
Cdd:TIGR00621   1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD------GEWKEETEWHDIVIFGR-LAEVAAQYLKKGS 73

                          90       100
                  ....*....|....*....|....*...
gi 47058964   107 RIFVEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:TIGR00621  74 LVYVEGRLRTRKWEDQNGQKRSKTEIIA 101
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 30-134 1.57e-31

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 108.48  E-value: 1.57e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964    30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGdsevyqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGARIF 109
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDR-------GEGDEETDFHRVVVFGK-LAEVAAQYLKKGSLVY 72

                          90       100
                  ....*....|....*....|....*
gi 47058964   110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:pfam00436  73 VEGRLQTRKYEDQEGQKRYVTEIVA 97
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 33-134 2.36e-27

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 97.68  E-value: 2.36e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964  33 VQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmgDVSQKTTWHRISVFRPgLRDVAYQYVKKGARIFVEG 112
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRD-------EEEEETDWIRVVAFGK-LAENAAKYLKKGDLVYVEG 72

                        90       100
                ....*....|....*....|..
gi 47058964 113 KVDYGEYMDKNNVRRQATTIIA 134
Cdd:cd04496  73 RLRTRSWEDKDGQKRYGTEVVA 94
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
30-134 5.74e-27

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 97.22  E-value: 5.74e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964  30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRISVFRpGLRDVAYQYVKKGARIF 109
Cdd:COG0629   1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQD------GEWKDETDWHRVVAWG-KLAENAAEYLKKGDKVY 73

                        90       100
                ....*....|....*....|....*
gi 47058964 110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:COG0629  74 VEGRLRTRSWEDKDGQKRYTTEVVA 98
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 29-133 1.33e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 90.25  E-value: 1.33e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSevyqmGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARI 108
Cdd:PRK06341   4 SVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNS-----GERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKV 78

                         90       100
                 ....*....|....*....|....*
gi 47058964  109 FVEGKVDYGEYMDKNNVRRQATTII 133
Cdd:PRK06341  79 YIEGQLQTRKWTDQSGVERYSTEVV 103
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 26-133 4.04e-21

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 84.21  E-value: 4.04e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGdsevyQMGDVSQKTTWHRISVFRPgLRDVAYQYVKKG 105
Cdd:PRK05733   1 MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDK-----QSGQKVERTEWHRVSLFGK-VAEIAGEYLRKG 74

                         90       100
                 ....*....|....*....|....*...
gi 47058964  106 ARIFVEGKVDYGEYmDKNNVRRQATTII 133
Cdd:PRK05733  75 SQVYIEGKLQTREW-EKDGIKRYTTEIV 101
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 29-133 1.42e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 82.08  E-value: 1.42e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   29 SLNRVQLLGRVGQDPVMRQV-EGKNPVTIfSLATNEMWRSGDSevyqmGDVSQKTTWHRISVFRPGLRDVAYQYVKKGAR 107
Cdd:PRK06642   4 SLNKVILIGNVGRDPEIRTTgEGKKIINL-SLATTETWKDRIT-----SERKERTEWHRVVIFSEGLVSVVERYVTKGSK 77

                         90       100
                 ....*....|....*....|....*.
gi 47058964  108 IFVEGKVDYGEYMDKNNVRRQATTII 133
Cdd:PRK06642  78 LYIEGSLQTRKWNDNSGQEKYTTEVV 103
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 28-133 1.58e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 80.16  E-value: 1.58e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   28 RSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGdsevyQMGDVSQKTTWHRISVFRPgLRDVAYQYVKKGAR 107
Cdd:PRK13732   4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDK-----QTGEMREQTEWHRVVLFGK-LAEVAGEYLRKGAQ 77

                         90       100
                 ....*....|....*....|....*.
gi 47058964  108 IFVEGKVDYGEYMDkNNVRRQATTII 133
Cdd:PRK13732  78 VYIEGQLRTRSWED-NGITRYVTEIL 102
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 28-135 3.84e-18

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 76.42  E-value: 3.84e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   28 RSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGdsevyQMGDVSQKTTWHRISVFRPgLRDVAYQYVKKGAR 107
Cdd:PRK09010   4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK-----QTGEMKEQTEWHRVVLFGK-LAEVAGEYLRKGSQ 77

                         90       100
                 ....*....|....*....|....*...
gi 47058964  108 IFVEGKVDYGEYMDKNNVRRQATTIIAG 135
Cdd:PRK09010  78 VYIEGQLRTRKWTDQSGQDRYTTEVVVN 105
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 26-134 3.44e-16

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 71.12  E-value: 3.44e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRIsVFRPGLRDVAYQYVKKG 105
Cdd:PRK08763   1 MARGINKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDRE------GNTQERTEWHRV-KFFGKLGEIAGEYLRKG 73

                         90       100
                 ....*....|....*....|....*....
gi 47058964  106 ARIFVEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:PRK08763  74 SQCYIEGSIRYDKFTGQDGQERYVTEIVA 102
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 30-132 1.31e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 69.61  E-value: 1.31e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSevyqmGDVSQKTTWHRIsVFRPGLRDVAYQYVKKGARIF 109
Cdd:PRK06863   4 INKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNT-----GERREVTEWHRI-VFYRRQAEVAGEYLRKGSQVY 77

                         90       100
                 ....*....|....*....|...
gi 47058964  110 VEGKVDYGEYMDKNNVRRQATTI 132
Cdd:PRK06863  78 VEGRLKTRKWQDQNGQDRYTTEI 100
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 29-134 2.72e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 63.66  E-value: 2.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSevyqmGDVSQKTTWHRISVFRPgLRDVAYQYVKKGARI 108
Cdd:PRK06958   3 SVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKAS-----GEFKEATEWHRVAFFGR-LAEIVGEYLKKGSSV 76

                         90       100
                 ....*....|....*....|....*.
gi 47058964  109 FVEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:PRK06958  77 YIEGRIRTRKWQGQDGQDRYSTEIVA 102
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 29-138 1.38e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 47.37  E-value: 1.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEmwRSGDSEvyqmGDVSQKTTWHRISvfrpglrDVAYQYVKKGARI 108
Cdd:PRK07459   2 SLNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNR--RSRDDE----PDWFNLEIWGKTA-------QVAADYVKKGSLI 68

                         90       100       110
                 ....*....|....*....|....*....|
gi 47058964  109 FVEGKVDYGEYMDKNNVRRQATTIIAGKKL 138
Cdd:PRK07459  69 GITGSLKFDRWTDRNTGEDRSKPVIRVDRL 98
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 31-134 2.39e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 47.92  E-value: 2.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   31 NRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDsevyqmGDVSQKTTWHRISVF-RPGlrDVAYQYVKKGARIF 109
Cdd:PRK08486   3 NKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQD------GEKGEEVCFIDIRLFgRTA--EIANQYLSKGSKVL 74

                         90       100
                 ....*....|....*....|....*
gi 47058964  110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:PRK08486  75 IEGRLTFESWMDQNGQKRSKHTITA 99
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 30-123 3.94e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 44.12  E-value: 3.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEmwRSGDSEvyqmgdvsqKTTWHRISVFrpGLR-DVAYQYVKKGARI 108
Cdd:PRK06293   1 MMFGYIVGRLGADPEERMTSKGKRVVVLRLGVKS--RVGSKD---------ETVWCRCNIW--GNRyDKMLPYLKKGSGV 67

                         90
                 ....*....|....*
gi 47058964  109 FVEGKVDYGEYMDKN 123
Cdd:PRK06293  68 IVAGEMSPESYVDKD 82
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 30-134 7.06e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 40.94  E-value: 7.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEvyqmgdvsQKTTWHRISVFRPGLRDVAyQYVKKGARIF 109
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGE--------READFINCVIWRKQAENVA-NYLKKGSLAG 72

                         90       100
                 ....*....|....*....|....*
gi 47058964  110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:PRK06751  73 VDGRLQTRNYEGQDGKRVYVTEVLA 97
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 30-134 8.09e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 37.56  E-value: 8.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47058964   30 LNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEvyqmgdvsQKTTWHRISVFRPGLRDVAyQYVKKGARIF 109
Cdd:PRK07275   2 INNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGE--------READFINCVIWRQQAENLA-NWAKKGALIG 72

                         90       100
                 ....*....|....*....|....*
gi 47058964  110 VEGKVDYGEYMDKNNVRRQATTIIA 134
Cdd:PRK07275  73 VTGRIQTRNYENQQGQRVYVTEVVA 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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