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Conserved domains on  [gi|208431769|ref|NP_113638|]
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UPF0696 protein C11orf68 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1917 super family cl07513
Domain of unknown function (DUF1917); This domain is found in various hypothetical and ...
 156-253 8.47e-15

Domain of unknown function (DUF1917); This domain is found in various hypothetical and basophilic leukaemia proteins. It has no known function.


The actual alignment was detected with superfamily member pfam08939:

Pssm-ID: 401038  Cd Length: 258  Bit Score: 72.35  E-value: 8.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208431769  156 LRQLAITHHVLSGKWLMHLAPGfKLDHAWAGIARAVVEGQLQV-AKVSPRAKEGGRQ--VICVYTDDFTDR--------- 223
Cdd:pfam08939 155 ILDLARETGVVSGKWMLFPSPE-EVDEVWGAVAEATANNELGIaAKVATSGDGDARKarLICVYTKDFRDKedvkrvlrk 233

                          90       100       110
                  ....*....|....*....|....*....|...
gi 208431769  224 ---LGVLEADSaiRAagikclLTYKPDVYTYLG 253
Cdd:pfam08939 234 lkeLGLVDRGG--RP------IYYKCDAYTYLG 258
 
Name Accession Description Interval E-value
DUF1917 pfam08939
Domain of unknown function (DUF1917); This domain is found in various hypothetical and ...
 156-253 8.47e-15

Domain of unknown function (DUF1917); This domain is found in various hypothetical and basophilic leukaemia proteins. It has no known function.


Pssm-ID: 401038  Cd Length: 258  Bit Score: 72.35  E-value: 8.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208431769  156 LRQLAITHHVLSGKWLMHLAPGfKLDHAWAGIARAVVEGQLQV-AKVSPRAKEGGRQ--VICVYTDDFTDR--------- 223
Cdd:pfam08939 155 ILDLARETGVVSGKWMLFPSPE-EVDEVWGAVAEATANNELGIaAKVATSGDGDARKarLICVYTKDFRDKedvkrvlrk 233

                          90       100       110
                  ....*....|....*....|....*....|...
gi 208431769  224 ---LGVLEADSaiRAagikclLTYKPDVYTYLG 253
Cdd:pfam08939 234 lkeLGLVDRGG--RP------IYYKCDAYTYLG 258
 
Name Accession Description Interval E-value
DUF1917 pfam08939
Domain of unknown function (DUF1917); This domain is found in various hypothetical and ...
 156-253 8.47e-15

Domain of unknown function (DUF1917); This domain is found in various hypothetical and basophilic leukaemia proteins. It has no known function.


Pssm-ID: 401038  Cd Length: 258  Bit Score: 72.35  E-value: 8.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208431769  156 LRQLAITHHVLSGKWLMHLAPGfKLDHAWAGIARAVVEGQLQV-AKVSPRAKEGGRQ--VICVYTDDFTDR--------- 223
Cdd:pfam08939 155 ILDLARETGVVSGKWMLFPSPE-EVDEVWGAVAEATANNELGIaAKVATSGDGDARKarLICVYTKDFRDKedvkrvlrk 233

                          90       100       110
                  ....*....|....*....|....*....|...
gi 208431769  224 ---LGVLEADSaiRAagikclLTYKPDVYTYLG 253
Cdd:pfam08939 234 lkeLGLVDRGG--RP------IYYKCDAYTYLG 258
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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