NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|13899289|ref|NP_113640|]
View 

RNA guanine-N7 methyltransferase activating subunit [Homo sapiens]

Protein Classification

RAM domain-containing protein( domain architecture ID 10633920)

RAM domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
RAM pfam15320
mRNA cap methylation, RNMT-activating mini protein; This family of proteins is found in ...
10-87 1.31e-19

mRNA cap methylation, RNMT-activating mini protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 102 and 154 amino acids in length. There is a single completely conserved residue D that may be functionally important. RAM is a family of eukaryotic proteins that are an obligate component of the mammalian cap methyltransferase, RNMT (RNA guanine-7 methyltransferase). RAM consists of an N-terminal RNMT-activating domain and a C-terminal RNA-binding domain. Either RAM or RNMT independently have rather weak binding affinity for RNA, but together their RNA affinity is significantly increased. RAM is necessary for efficient cap methylation, maintaining mRNA expression levels, for mRNA translation and for cell viability.


:

Pssm-ID: 464643 [Multi-domain]  Cd Length: 83  Bit Score: 76.25  E-value: 1.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13899289    10 KFEEMFASRFTENDKEYQEYLKRPPESPPIVEEWN--SRAGGNQRNRGNRLQDNRQF--RGRDNRWGWPSDNRSNQ-WHG 84
Cdd:pfam15320   1 ECEEEFADRFTEDDEEYQKYLKRPPDPPPIVEPWNnnGRGGGNQRGRDNRFNDRRGGgdRGRDRRRGWGGDRRRNQrWQD 80

                  ...
gi 13899289    85 RSW 87
Cdd:pfam15320  81 RGG 83
 
Name Accession Description Interval E-value
RAM pfam15320
mRNA cap methylation, RNMT-activating mini protein; This family of proteins is found in ...
10-87 1.31e-19

mRNA cap methylation, RNMT-activating mini protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 102 and 154 amino acids in length. There is a single completely conserved residue D that may be functionally important. RAM is a family of eukaryotic proteins that are an obligate component of the mammalian cap methyltransferase, RNMT (RNA guanine-7 methyltransferase). RAM consists of an N-terminal RNMT-activating domain and a C-terminal RNA-binding domain. Either RAM or RNMT independently have rather weak binding affinity for RNA, but together their RNA affinity is significantly increased. RAM is necessary for efficient cap methylation, maintaining mRNA expression levels, for mRNA translation and for cell viability.


Pssm-ID: 464643 [Multi-domain]  Cd Length: 83  Bit Score: 76.25  E-value: 1.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13899289    10 KFEEMFASRFTENDKEYQEYLKRPPESPPIVEEWN--SRAGGNQRNRGNRLQDNRQF--RGRDNRWGWPSDNRSNQ-WHG 84
Cdd:pfam15320   1 ECEEEFADRFTEDDEEYQKYLKRPPDPPPIVEPWNnnGRGGGNQRGRDNRFNDRRGGgdRGRDRRRGWGGDRRRNQrWQD 80

                  ...
gi 13899289    85 RSW 87
Cdd:pfam15320  81 RGG 83
 
Name Accession Description Interval E-value
RAM pfam15320
mRNA cap methylation, RNMT-activating mini protein; This family of proteins is found in ...
10-87 1.31e-19

mRNA cap methylation, RNMT-activating mini protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 102 and 154 amino acids in length. There is a single completely conserved residue D that may be functionally important. RAM is a family of eukaryotic proteins that are an obligate component of the mammalian cap methyltransferase, RNMT (RNA guanine-7 methyltransferase). RAM consists of an N-terminal RNMT-activating domain and a C-terminal RNA-binding domain. Either RAM or RNMT independently have rather weak binding affinity for RNA, but together their RNA affinity is significantly increased. RAM is necessary for efficient cap methylation, maintaining mRNA expression levels, for mRNA translation and for cell viability.


Pssm-ID: 464643 [Multi-domain]  Cd Length: 83  Bit Score: 76.25  E-value: 1.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13899289    10 KFEEMFASRFTENDKEYQEYLKRPPESPPIVEEWN--SRAGGNQRNRGNRLQDNRQF--RGRDNRWGWPSDNRSNQ-WHG 84
Cdd:pfam15320   1 ECEEEFADRFTEDDEEYQKYLKRPPDPPPIVEPWNnnGRGGGNQRGRDNRFNDRRGGgdRGRDRRRGWGGDRRRNQrWQD 80

                  ...
gi 13899289    85 RSW 87
Cdd:pfam15320  81 RGG 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH