|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.21e-146 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 417.32 E-value: 1.21e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 14010667 321 TPPAMMTPLITVSSMLLPLSPIISTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-194 |
1.53e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 81.59 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 23 SSHWLLIWVGLEMNMLAIIPILT-KKTSPRPMEAATKYFLTQATASMILMMAIII--NTMNSGQWTAMKTV--------- 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmyNYTGTLSFDELSKAltgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 91 SSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILL-TWQKLAP-----MSILLQMNNSINSNITLLIALLSIAI 164
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190
....*....|....*....|....*....|
gi 14010667 165 GGWGGLNQTQLRKILAFSSISHMGWMLAII 194
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAL 190
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
10-200 |
7.17e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 81.32 E-value: 7.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 10 YFTLFIGTVLTMI----SSHWLLIWVGLEMNMLAIIpILT--KKTSPRPMEAATKYFLTQATASMILMMAI-----IINT 78
Cdd:COG1007 104 FYALLLFATLGMMlmasANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYGIsllygATGS 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 79 MNSGQWTAMKTVSSLSSP-------MMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINS 151
Cdd:COG1007 183 LNLAGIAAALAAGGANSPllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFP 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 14010667 152 NIT-------LLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWML-AIITFNPSA 200
Cdd:COG1007 263 GLAadwqlllAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPLG 319
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-197 |
8.27e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 71.90 E-value: 8.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 7 LLIYFTLFiGTVLTMISSHWLLIWVGLEMNMLAI-IPILTKKTSPRPMEAATKYFLTQATASMILMMAI-----IINTMN 80
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSP-------MMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSI---- 149
Cdd:TIGR01770 185 FEDLLLFLSNGMLNISllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgf 264
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 14010667 150 ---NSNITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFN 197
Cdd:TIGR01770 265 seaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAG 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.21e-146 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 417.32 E-value: 1.21e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 14010667 321 TPPAMMTPLITVSSMLLPLSPIISTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
6.98e-101 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 300.97 E-value: 6.98e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 14010667 321 TPPaMMTPLITVSSMLLPLSPIISTL 346
Cdd:MTH00112 321 KNT-LTATLTTLSTLLLPLSPMILTI 345
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.10e-99 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 298.26 E-value: 1.10e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSiNSNITLLIALL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 14010667 321 TPPAMMTPLITVSSMLLPLSPIISTL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
6.76e-96 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 288.36 E-value: 6.76e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*.
gi 14010667 321 TPPaMMTPLITVSSMLLPLSPIISTL 346
Cdd:MTH00070 321 TNN-LLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
5-347 |
1.38e-73 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 231.36 E-value: 1.38e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 5 ILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMNSGQW 84
Cdd:MTH00041 5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 85 TAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALLSIAI 164
Cdd:MTH00041 85 SINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 165 GGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFImILSIPSTSTL-TMSHSWNKTPVLTSM 243
Cdd:MTH00041 165 GGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFL-IGNNFSLSTLsHLNKLSQLNPISAFL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 244 LLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTPTPP 323
Cdd:MTH00041 244 FILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITV 323
|
330 340
....*....|....*....|....
gi 14010667 324 AMMTPLITVSSMLLPLSPIISTLN 347
Cdd:MTH00041 324 YGVILSILSSISILGLLLIPLFLS 347
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.24e-71 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 226.39 E-value: 1.24e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQlNTP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319
|
330 340
....*....|....*....|....*.
gi 14010667 321 TPPAMMTPLITVSSMLLPLSPIISTL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-338 |
3.84e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 154.60 E-value: 3.84e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 sgqwtaMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMnnsINSNITLLIALL 160
Cdd:MTH00160 82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYsSSLTMFPTMNNMKMKWQLNTP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311
|
330
....*....|....*...
gi 14010667 321 TPPAMMTPLITVSSMLLP 338
Cdd:MTH00160 312 SLILNFLSFISLFGLILS 329
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-315 |
1.38e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 153.12 E-value: 1.38e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMN 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWtamktvssLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITL-LIAL 159
Cdd:MTH00144 81 SFSW--------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcVISV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 160 LSIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFiMILSIPSTSTLTMSHSWNKTPV 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLF-FSLWSGDSGSMKDLGSLKPSYK 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 14010667 240 LTSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKW 315
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-338 |
2.67e-40 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 144.54 E-value: 2.67e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIIntmn 80
Cdd:MTH00011 3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 sgQWTAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINSNITLLIALL 160
Cdd:MTH00011 79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWNKTPVL 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 241 TSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSsltmFPTMNNMKMKWQLNTP 320
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNF----MYLSPTFSSLKSAPYE 312
|
330
....*....|....*...
gi 14010667 321 TPPAMMTPLITVSSMLLP 338
Cdd:MTH00011 313 PKTKILISMCTLSLGLIP 330
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-329 |
3.82e-32 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 122.47 E-value: 3.82e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 8 LIYFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMNSgqwtam 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 88 kTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNsiNSNITLLIALLSIAIGGW 167
Cdd:MTH00197 76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 168 GGLNQTQLRKILAFSSISHMGWMLAIITFNPSATILNLLIYLLLTLsMFIMILSIPSTSTLTMSHSWNKTP-VLTSMLLT 246
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMF-MLFLFLSKNNLSSLNQQYSNPESMsSNLVFLGL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 247 TLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVYSSSLTMFPTMNNMKMKWQLNTPTPPAMM 326
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLM 311
|
...
gi 14010667 327 TPL 329
Cdd:MTH00197 312 MML 314
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-297 |
1.41e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 85.47 E-value: 1.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 15 IGTVLTMISSHWLLIWVGLEMNMLAI-IPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMNSGQ---------W 84
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGlhlsyinlvL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 85 TAMKTVSSLSSPM----MLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNsiNSNITLLIALL 160
Cdd:MTH00196 84 NSGQSFSSVSVPIgyllIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 161 SIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFNP----SATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHS--W 234
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSglS 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 14010667 235 NKTPVLTSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLV 297
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
4-298 |
1.55e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 86.22 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 4 PILLLIyftLFIGTVLTMISSHWLLIWVGLEMNMLAI-IPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMNSG 82
Cdd:MTH00199 100 PILILI---VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 83 QwTAMKTVSSLSSP-----MMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMnnSINSNITLLI 157
Cdd:MTH00199 177 E-TSIQGINSILTGdvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQI--GPVTNVVLIC 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 158 ALLSIAIGGWGGLNQTQLRKILAFSSISHMGWML---AIITFNP-SATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHS 233
Cdd:MTH00199 254 AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILfgvAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVS 333
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14010667 234 W--NKTPVLTSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVY 298
Cdd:MTH00199 334 GlsRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-194 |
1.53e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 81.59 E-value: 1.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 23 SSHWLLIWVGLEMNMLAIIPILT-KKTSPRPMEAATKYFLTQATASMILMMAIII--NTMNSGQWTAMKTV--------- 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmyNYTGTLSFDELSKAltgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 91 SSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILL-TWQKLAP-----MSILLQMNNSINSNITLLIALLSIAI 164
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190
....*....|....*....|....*....|
gi 14010667 165 GGWGGLNQTQLRKILAFSSISHMGWMLAII 194
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIAL 190
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
10-200 |
7.17e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 81.32 E-value: 7.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 10 YFTLFIGTVLTMI----SSHWLLIWVGLEMNMLAIIpILT--KKTSPRPMEAATKYFLTQATASMILMMAI-----IINT 78
Cdd:COG1007 104 FYALLLFATLGMMlmasANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYGIsllygATGS 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 79 MNSGQWTAMKTVSSLSSP-------MMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSINS 151
Cdd:COG1007 183 LNLAGIAAALAAGGANSPllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFP 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 14010667 152 NIT-------LLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWML-AIITFNPSA 200
Cdd:COG1007 263 GLAadwqlllAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPLG 319
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
10-192 |
4.83e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 75.63 E-value: 4.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 10 YFTLFIGTVLTMI----SSHWLLIWVGLEMNMLAI-IPILTKKTSPRPMEAATKYFLTQATASMILMMAI---------- 74
Cdd:PRK05777 105 FYLLVLFALLGMMvmvsANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMsllygatgsl 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 75 ----IINTMNSGQwtAMKTVSSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQM----- 145
Cdd:PRK05777 185 sfagIAKALADGS--GNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvaf 262
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 14010667 146 --NNSINSNITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWMLA 192
Cdd:PRK05777 263 ggLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
7-197 |
8.27e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 71.90 E-value: 8.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 7 LLIYFTLFiGTVLTMISSHWLLIWVGLEMNMLAI-IPILTKKTSPRPMEAATKYFLTQATASMILMMAI-----IINTMN 80
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygFTGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 81 SGQWTAMKTVSSLSSP-------MMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMNNSI---- 149
Cdd:TIGR01770 185 FEDLLLFLSNGMLNISllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgf 264
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 14010667 150 ---NSNITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFN 197
Cdd:TIGR01770 265 seaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAG 315
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-191 |
8.21e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 66.04 E-value: 8.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 15 IGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPR---------PMEAATKYFLTQATASMILMMAIIINTMNSGQWT 85
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGshfpspgntPPESGLKYWILGAMSSGFYLFGCALYFGFTGNEG 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 86 AMKTV--------------SSLSSPMMLIALTVKLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQMnnSINS 151
Cdd:MTH00198 279 MLGTIlsatlettnielrqGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL--VITS 356
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 14010667 152 NITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWML 191
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
2.52e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 52.65 E-value: 2.52e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 14010667 291 FFYMRLVYSSSLTMFPTMNNMKMKWQLNTPTPPAMMTPLITVSSMLLPLSP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-200 |
8.58e-09 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 56.63 E-value: 8.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 49 SPRPMEAATKYFLTQATASMILMMAIIINTMNSGQWT-AMKTVSSLSSPM---------MLIALTVKLGMTPFHFWVPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfDIAELAAAPLPLtaqlllflaFFIAFAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 119 -----TQGISLTSGLIL----------------LTWQKLAPMSILLqmnnsinsnitlliALLSIAIGGWGGLNQTQLRK 177
Cdd:COG1008 236 hveapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAAL--------------GVIGIIYGALVALAQTDLKR 301
|
170 180
....*....|....*....|....
gi 14010667 178 ILAFSSISHMGWM-LAIITFNPSA 200
Cdd:COG1008 302 LIAYSSVSHMGFVlLGIFALNPLG 325
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-301 |
1.35e-08 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 55.92 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 10 YFTLFIGTVLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFLTQATASMILMMAIIINTMNSGQ--WTAM 87
Cdd:COG0651 113 FLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTlnMADL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 88 KTVSSLSSP--------MMLIALTVKLGMTPFHFWVPE-----------VTQGISLTSGL--ILLTWQKLAPMSILLQMn 146
Cdd:COG0651 193 AARLAELDPglllaafaLLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFL- 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 147 nsinSNITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWML-AIITFNPSATILnlliyllltlSMFIMILSIPST 225
Cdd:COG0651 272 ----GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILlGLGLGTPLGLAG----------ALFHLLNHALAK 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 226 STLTMS--------HSWN---------KTPVLTSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLL 288
Cdd:COG0651 338 ALLFLAagaieratGTRDldklgglgkRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLL 417
|
330
....*....|...
gi 14010667 289 NLFFYMRLVYSSS 301
Cdd:COG0651 418 TLAYFVRIFGRAQ 430
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
50-200 |
4.85e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 54.18 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 50 PRPMEAATKYFLTQATASMILMMAIIINTMNSGQWTAMKTVSSLSSPM---------MLIALTVKLGMTPFHFWVPEV-T 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFDLLELLNLPLPFgvqtwlflaFFIAFAVKVPLFPLHTWLPDAhV 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 120 QGISLTSGLILLTWQKLAP---MSILLQM-NNSINSNITLLIALLSIAI--GGWGGLNQTQLRKILAFSSISHMGW-MLA 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygfLRFNLPLfPDASLYFAPVLAALGVIAIiyGALIALAQTDIKRLIAYSSISHMGFvLLG 311
|
....*...
gi 14010667 193 IITFNPSA 200
Cdd:TIGR01972 312 IFSFNELG 319
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
4-194 |
1.34e-07 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 52.83 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 4 PILLLIYFTLFIGTVLTMISSHWLLIWVGLEMNML---AIIPILTKKTSprpMEAATKYFLTQATASMILMMAIII---- 76
Cdd:PRK08676 102 KVFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVfsaMLIAILSAREN---IDAALKYIFIASTAMIFAFIGLIFlfsl 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 77 --NTMNSG--QWTAMKTVSSLSSP--------MMLIALTVKLGMTPFHFWVPEV-----TQGISLTSGLIL-LTWQKLAP 138
Cdd:PRK08676 179 trQALGTGtlNWTELAAHASLLSPsvlgasflFIFIGFLAKSGLVPFHTWLPAAyakapSVVSALLSGTVLnIGIYGILR 258
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 14010667 139 MSILLQMNN--SINSNITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWMLAII 194
Cdd:PRK08676 259 LSALLRQSGaaEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-191 |
2.64e-06 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 48.87 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 55 AATKYFLTQATASMILMMAIIINTMNSGQWT-AMKTVSSLSSPM---------MLIALTVKLGMTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTFTfDLAELGAKSYPLalelllyagFLIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14010667 121 GISLTSGLILLTWQKLApmsiLLQMNNSINSNITLLIALLSIAIGG----WGGLN---QTQLRKILAFSSISHMGWML 191
Cdd:PRK12561 218 PVSMILAGVLLKMGGYA----LIRFNVQMLPDAHVYFAPALAILGVvniiYGALNafaQDNVKRRLAYSSVSHMGFVL 291
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-197 |
6.93e-05 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 44.42 E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 55 AATKYFLTQATASMILMMAII---------INTMNSGQWTAMKTVSSLSSPMML---IALTVKLGMTPFHFWVPEVtQGI 122
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIIylvvvyynaTGTFDIADLLNLPLPPGVQYWLFLaffIAFAVKMPMFPLHTWLPDA-HVQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 123 SLTSGLILLtwqklapMSILLQMN-------------NSINSNITLLIALLSIAI--GGWGGLNQTQLRKILAFSSISHM 187
Cdd:PRK05846 241 APTAGSVLL-------AGILLKMGaygllrfslplfpDASHEFAPIIITLGVIAIiyGALVALAQTDIKKLIAYSSISHM 313
|
170
....*....|.
gi 14010667 188 GW-MLAIITFN 197
Cdd:PRK05846 314 GFvTLGIFAGN 324
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-191 |
2.28e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 42.73 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 9 IYFTLFIGTVLTMISSHWLLIWVGLEMnmLAIIPILTK---KTSPRPMEAATKYFLTQATASMILMMAIIINTMNSGQWT 85
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 86 AMKTVSSL----SSPMMLIALTV-------KLGMTPFHFWVPEVTQGISLTSGLILLTWQKLA----PMSILLQMNNSIN 150
Cdd:PRK02504 193 QLSAIALAlitsPSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 14010667 151 SNITLL---IALLSIAIGGWGGLNQTQLRKILAFSSISHMGWML 191
Cdd:PRK02504 273 EQWKLLftaLAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
1-196 |
4.35e-04 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 41.84 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 1 MKPPILLLIY--FTLFIGT-VLTMISSHWLLIWVGLEMNMLAIIPILTKKTSPRPMEAATKYFL------TQATASMILM 71
Cdd:PRK06458 102 LSPVTLRLYYgmYQLFLFTmLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILV 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 72 MA----IIINTMNSGQWTAMKTVSSLSSPM--------MLIALTVKLGMTPFHFWVPEV-TQGISLTSGL---ILLTWQK 135
Cdd:PRK06458 182 YAnaatVMGDGEMAILWTELLKHASLLDPTlmklafvfLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSALlsgVLLNVAL 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14010667 136 LAPMSILLQMNNSINSNI--TLLI--ALLSIAIGGWGGLNQTQLRKILAFSSISHMGwmlaIITF 196
Cdd:PRK06458 262 YAVLRYYILIDAAIGSDFpgRLLLifGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMG----LIAF 322
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
98-194 |
1.06e-03 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 40.80 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 98 MLIALTV--KLGMTPFHFWVPEVTQGISLTSGLILLTWQKLAPMSILLQ----MNNSINSNITLLIALLSIAI-GGWGGL 170
Cdd:PRK12650 212 VLIAVAAftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRfspvFHDVAVWNWLLIIVGMITALmGAVFAV 291
|
90 100
....*....|....*....|....
gi 14010667 171 NQTQLRKILAFSSISHMGWMLAII 194
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIVATI 315
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
97-298 |
4.22e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 38.71 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 97 MMLIALTVKLGMTPFHFWVPE--------VTQGISLTS------GLILLtwqkLAPMSILLQMNNSINSNITLLIALLSI 162
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRaypaappvVTALLSGLVtkvavyALIRI----YFTVFGGDFRFALGLGWLLAVLALLSM 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 163 AIGGWGGLNQTQLRKILAFSSISHMGWMLAIITFN----PSATILNLLIYLLLTLSMFIMILSIPSTSTLTMSHSWN--- 235
Cdd:PRK08375 283 LVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLtplaLAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSglg 362
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14010667 236 -KTPVLTSMLLTTLLSLGGLPPLSGFLPKWIIIQELCNSHNIITPTLMAIMSLLNLFFYMRLVY 298
Cdd:PRK08375 363 rRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
10-190 |
4.81e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 38.59 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 10 YFTLFIGTVLTM-ISSHWLLIWVGLEMNMLA---IIPILTKKTSPRpmEAATKYFLTQATASMILMMAIII--NTMNSGQ 83
Cdd:COG1009 116 YLLLFMAAMLGLvLSDNLLLLFVFWELVGLCsylLIGFWYEKPSAR--RAARKAFLVTRVGDLGLLLGILLlgAIAGTLN 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 84 WTAMKT-VSSLSSPMMLIALTV--------KLGMTPFHFWVPE-----------------VTQGISLtsglilltwqkLA 137
Cdd:COG1009 194 FSELLAaAPTILSSPLLTLILLllllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYL-----------LA 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 14010667 138 PMSILLQMNNSINSnITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMGWM 190
Cdd:COG1009 263 RLSPLFALSPVWLT-VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
55-191 |
4.85e-03 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 38.77 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 55 AATKYFLTQATASMILMMAII-INTMNSGQWT-AMKTVSSLSSPM---------MLIALTVKLGMTPFHFWVPEvTQGIS 123
Cdd:CHL00011 163 SATKFILYTAGGSIFLLIGVLgMGLYGSNEPTlNFETLANQSYPValeilfyigFLIAYAVKLPIIPLHTWLPD-THGEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14010667 124 LTSGLILLTwqklapmSILLQMN---------------NSINSNITLLIALLSIAIGGWGGLNQTQLRKILAFSSISHMG 188
Cdd:CHL00011 242 HYSTCMLLA-------GILLKMGayglirinmellphaHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMG 314
|
...
gi 14010667 189 WML 191
Cdd:CHL00011 315 FII 317
|
|
| |
